org.emboss.jemboss.editor
Class GroutSequence

java.lang.Object
  org.emboss.jemboss.editor.Sequence
      org.emboss.jemboss.editor.GroutSequence

public class GroutSequence

extends Sequence

Sequence object

Field Summary

(package private) int

indent

Fields inherited from class org.emboss.jemboss.editor.Sequence

length, seq

Constructor Summary

GroutSequence(java.lang.String seq)

GroutSequence(java.lang.String seq, float wt)

GroutSequence(java.lang.String name, java.lang.String seq)

GroutSequence(java.lang.String name, java.lang.String seq, int length)

GroutSequence(java.lang.String name, java.lang.String seq, int length, float wt)

Method Summary

void	setIndent(int newIndent) Insert a residue into the sequence

Methods inherited from class org.emboss.jemboss.editor.Sequence

appendToSequence, complementSequence, deleteResidue, getID, getLength, getName, getResidue, getResidueAt, getSequence, getWeight, insertResidue, isProtein, main, reverseComplementSequence, reverseSequence, setType, setWeight, trim

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

indent

int indent

Constructor Detail

GroutSequence

public GroutSequence(java.lang.String name,
                     java.lang.String seq,
                     int length,
                     float wt)

Parameters:

name - sequence name

seq - sequence string

length - sequence length

GroutSequence

public GroutSequence(java.lang.String name,
                     java.lang.String seq,
                     int length)

Parameters:

name - sequence name

seq - sequence string

length - sequence length

GroutSequence

public GroutSequence(java.lang.String name,
                     java.lang.String seq)

Parameters:

name - sequence name

seq - sequence string

GroutSequence

public GroutSequence(java.lang.String seq)

Parameters:

seq - sequence string

GroutSequence

public GroutSequence(java.lang.String seq,
                     float wt)

Parameters:

seq - sequence string

Method Detail

setIndent

public void setIndent(int newIndent)

Insert a residue into the sequence