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java.lang.Object java.awt.Component java.awt.Container javax.swing.JComponent javax.swing.JPanel org.emboss.jemboss.editor.SequenceJPanel org.emboss.jemboss.editor.GroutSequenceJPanel
Sequence panel for drawing a sequence or the sequence numbers
Nested Class Summary |
Nested classes inherited from class org.emboss.jemboss.editor.SequenceJPanel |
SequenceJPanel.PopupListener |
Nested classes inherited from class javax.swing.JPanel |
javax.swing.JPanel.AccessibleJPanel |
Nested classes inherited from class javax.swing.JComponent |
javax.swing.JComponent.AccessibleJComponent |
Nested classes inherited from class java.awt.Container |
java.awt.Container.AccessibleAWTContainer |
Nested classes inherited from class java.awt.Component |
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary | |
(package private) int |
centreMarkerX
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(package private) int |
indent
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Fields inherited from class org.emboss.jemboss.editor.SequenceJPanel |
boundWidth2, drawNumber, interval, resWidth, seq, seqHeight, viewPane |
Fields inherited from class javax.swing.JPanel |
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Fields inherited from class javax.swing.JComponent |
accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW |
Fields inherited from class java.awt.Container |
|
Fields inherited from class java.awt.Component |
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface java.awt.image.ImageObserver |
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
GroutSequenceJPanel(int interval,
int seqLength)
Constructor for sequence numbering |
|
GroutSequenceJPanel(int indent,
int interval,
int seqLength)
Constructor for sequence numbering and indenting the sequence |
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GroutSequenceJPanel(int indent,
Sequence seq,
javax.swing.JComponent viewPane,
boolean drawSequence,
boolean drawBlackBox,
boolean drawColorBox,
java.util.Hashtable colorTable,
int ypad)
Constructor with default font size and indenting the sequence |
|
GroutSequenceJPanel(int indent,
Sequence seq,
javax.swing.JComponent viewPane,
boolean drawSequence,
boolean drawBlackBox,
boolean drawColorBox,
java.util.Hashtable colorTable,
int fontSize,
int ypad)
Constructor for indenting the sequence |
|
GroutSequenceJPanel(Sequence seq,
javax.swing.JComponent viewPane,
boolean drawSequence,
boolean drawBlackBox,
boolean drawColorBox,
java.util.Hashtable colorTable,
int ypad)
Constructor with default font size |
|
GroutSequenceJPanel(Sequence seq,
javax.swing.JComponent viewPane,
boolean drawSequence,
boolean drawBlackBox,
boolean drawColorBox,
java.util.Hashtable colorTable,
int fontSize,
int ypad)
|
Method Summary | |
protected void |
doDrawNumber(int i,
java.awt.FontMetrics metrics,
java.awt.Graphics g)
|
protected void |
drawCentreMarker(java.awt.Graphics g)
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void |
groutGraphicSequenceCollectionChanged(GroutGraphicSequenceCollectionEvent e)
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void |
init()
Add the mouse listener's |
void |
setIndent(int indent)
indents the sequence by specifed amount |
Methods inherited from class org.emboss.jemboss.editor.SequenceJPanel |
actionPerformed, attach, detach, detachAll, getFontSize, getName, getNamePrintGraphic, getPreferredSize, getResidueWidth, getSequenceHeight, getSequencePrintGraphic, getSequenceResidueWidth, getSequenceWidth, getToolTipLocation, getToolTipText, isPrettyPlot, notifyGroup, paintComponent, setColorScheme, setDefaultColorHashtable, setDrawBoxes, setDrawColor, setFontSize, setPrettyPlot, setSequenceLength, showPattern, update, viewPaneResize |
Methods inherited from class javax.swing.JPanel |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI |
Methods inherited from class javax.swing.JComponent |
addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update |
Methods inherited from class java.awt.Container |
add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
int centreMarkerX
int indent
Constructor Detail |
public GroutSequenceJPanel(int indent, Sequence seq, javax.swing.JComponent viewPane, boolean drawSequence, boolean drawBlackBox, boolean drawColorBox, java.util.Hashtable colorTable, int fontSize, int ypad)
indent
- number of residues to indent this sequenceseq
- sequence to displayviewPane
- sequence alignment paneldrawSequence
- draw the sequence if truedrawBlackBox
- draw a black box around residuesdrawColorBox
- colour the residuescolorTable
- colour schemefontSize
- font sizeypad
- sequence height padpublic GroutSequenceJPanel(int indent, Sequence seq, javax.swing.JComponent viewPane, boolean drawSequence, boolean drawBlackBox, boolean drawColorBox, java.util.Hashtable colorTable, int ypad)
indent
- number of residues to indent this sequenceseq
- sequence to displayviewPane
- sequence alignment paneldrawSequence
- draw the sequence if truedrawBlackBox
- draw a black box around residuesdrawColorBox
- colour the residuescolorTable
- colour schemeypad
- sequence height padpublic GroutSequenceJPanel(int indent, int interval, int seqLength)
indent
- number of residues to indent this sequenceinterval
- numbering intervalseqLength
- length of the sequencepublic GroutSequenceJPanel(Sequence seq, javax.swing.JComponent viewPane, boolean drawSequence, boolean drawBlackBox, boolean drawColorBox, java.util.Hashtable colorTable, int fontSize, int ypad)
seq
- sequence to displayviewPane
- sequence alignment paneldrawSequence
- draw the sequence if truedrawBlackBox
- draw a black box around residuesdrawColorBox
- colour the residuescolorTable
- colour schemefontSize
- font sizeypad
- sequence height padpublic GroutSequenceJPanel(Sequence seq, javax.swing.JComponent viewPane, boolean drawSequence, boolean drawBlackBox, boolean drawColorBox, java.util.Hashtable colorTable, int ypad)
seq
- sequence to displayviewPane
- sequence alignment paneldrawSequence
- draw the sequence if truedrawBlackBox
- draw a black box around residuesdrawColorBox
- colour the residuescolorTable
- colour schemeypad
- sequence height padpublic GroutSequenceJPanel(int interval, int seqLength)
interval
- numbering intervalseqLength
- length of the sequenceMethod Detail |
public void setIndent(int indent)
indent
- number of residues to indent this sequencepublic void init()
init
in class SequenceJPanel
public void groutGraphicSequenceCollectionChanged(GroutGraphicSequenceCollectionEvent e)
groutGraphicSequenceCollectionChanged
in interface GroutGraphicSequenceCollectionListener
protected void doDrawNumber(int i, java.awt.FontMetrics metrics, java.awt.Graphics g)
protected void drawCentreMarker(java.awt.Graphics g)
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