org.emboss.jemboss.editor
Class SequenceProperties

java.lang.Object
  org.emboss.jemboss.editor.SequenceProperties

public class SequenceProperties

extends java.lang.Object

General sequence properties

Field Summary

static java.util.Hashtable	acidColor Acidic/Basic (Red=acidic, Blue=basic)
static java.awt.Color	AQUAMARINE AQUAMARINE from EMBOSS data Ecolour.map
static java.util.Hashtable	aromaticColor Aromatic/Aliphatic (Red=Aromatic, Blue=Aliphatic)
static java.util.Hashtable	baseColor nucletide colour scheme
static java.awt.Color	BLUEVIOLET BLUEVIOLET from EMBOSS data Ecolour.map
static java.awt.Color	BROWN BROWN from EMBOSS data Ecolour.map
static java.util.Hashtable	chargeColor Positive/Negative charge (Red=Positive, Blue=Negative)
static java.util.Hashtable	hydrophobicColor Hydrophobic (Red=Hydrophobic)
static java.awt.Color	MAGENTA MAGENTA from EMBOSS data Ecolour.map
static java.awt.Color	PINK PINK from EMBOSS data Ecolour.map
static java.util.Hashtable	polarColor Polar (Red=Polar)
static java.util.Hashtable	rasmolColor rasmol colour scheme
static java.util.Hashtable	residueColor
static java.awt.Color	SALMON SALMON from EMBOSS data Ecolour.map
static java.util.Hashtable	sizeColor Tiny/Small/Large (Red=Tiny, Green=Small, Blue=Large)
static java.util.Hashtable	surfaceColor Surface/Buried (Red=Surface, Blue=Buried)
static java.util.Hashtable	taylorColor Taylor colour scheme, W.R.Taylor Protein Eng vol.10, 7 pp743-746, 1997
static java.awt.Color	TURQUOISE TURQUOISE from EMBOSS data Ecolour.map
static java.awt.Color	WHEAT WHEAT from EMBOSS data Ecolour.map

Constructor Summary

SequenceProperties()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

taylorColor

public static java.util.Hashtable taylorColor

Taylor colour scheme, W.R.Taylor Protein Eng vol.10, 7 pp743-746, 1997

AQUAMARINE

public static java.awt.Color AQUAMARINE

AQUAMARINE from EMBOSS data Ecolour.map

WHEAT

public static java.awt.Color WHEAT

WHEAT from EMBOSS data Ecolour.map

PINK

public static java.awt.Color PINK

PINK from EMBOSS data Ecolour.map

BROWN

public static java.awt.Color BROWN

BROWN from EMBOSS data Ecolour.map

BLUEVIOLET

public static java.awt.Color BLUEVIOLET

BLUEVIOLET from EMBOSS data Ecolour.map

TURQUOISE

public static java.awt.Color TURQUOISE

TURQUOISE from EMBOSS data Ecolour.map

MAGENTA

public static java.awt.Color MAGENTA

MAGENTA from EMBOSS data Ecolour.map

SALMON

public static java.awt.Color SALMON

SALMON from EMBOSS data Ecolour.map

residueColor

public static java.util.Hashtable residueColor

rasmolColor

public static java.util.Hashtable rasmolColor

rasmol colour scheme

acidColor

public static java.util.Hashtable acidColor

Acidic/Basic (Red=acidic, Blue=basic)

polarColor

public static java.util.Hashtable polarColor

Polar (Red=Polar)

hydrophobicColor

public static java.util.Hashtable hydrophobicColor

Hydrophobic (Red=Hydrophobic)

aromaticColor

public static java.util.Hashtable aromaticColor

Aromatic/Aliphatic (Red=Aromatic, Blue=Aliphatic)

surfaceColor

public static java.util.Hashtable surfaceColor

Surface/Buried (Red=Surface, Blue=Buried)

chargeColor

public static java.util.Hashtable chargeColor

Positive/Negative charge (Red=Positive, Blue=Negative)

sizeColor

public static java.util.Hashtable sizeColor

Tiny/Small/Large (Red=Tiny, Green=Small, Blue=Large)

baseColor

public static java.util.Hashtable baseColor

nucletide colour scheme

Constructor Detail

SequenceProperties

public SequenceProperties()