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Interface Summary | |
GroutAlignJFrameListener | GroutAlignJFrameListener.java Created: 10th June 2003 |
GroutGraphicSequenceCollectionListener | GroutGraphicSequenceCollectionListener.java Created: Thu Mar 13 14:42:13 2003 |
Class Summary | |
AlignApplet | |
AlignJFrame | Displays a grapical representation of a collection of sequences. |
ColourJFrame | Colour pallette display and editor. |
ColourMenu | Colour menu displayed in a popup menu from the colour display pallette (ColourJFrame). |
ColourPanel | Colour panel for each individual residue in the pallette |
Consensus | Calculate a consensus using the same method as 'cons' in the EMBOSS suite. |
ConsensusOptions | Defines the options to be used in calculating a consensus |
GraphicSequenceCollection | This class can be used to get a grapical representation of a collection of sequences. |
GroutAlignJFrame | Displays a grapical representation of a collection of sequences. |
GroutAlignJFrameEvent | |
GroutGraphicSequenceCollection | This class can be used to get a grapical representation of a collection of sequences. |
GroutGraphicSequenceCollectionEvent | |
GroutSequence | Sequence object |
GroutSequenceJPanel | Sequence panel for drawing a sequence or the sequence numbers |
IDTableJFrame | Use to display the identical matches table for each pair of sequences |
Matrix | Reads and hold a sequence scoring matrix |
MatrixJFrame | Display a matrix and list of available scoring matrix files |
Paste | |
PatternJFrame | Frame for searching for patterns in the sequences |
PlotConsensus | Plot the average similarity. |
PrettyPlotJFrame | JFrame to define the colour of residue if identical or a positive match. |
PrintableJTable | |
PrintAlignment | Class for printing the alignment |
PrintAlignmentImage | Print png/jpeg image and print preview. |
Sequence | Sequence object |
SequenceJPanel | Sequence panel for drawing a sequence or the sequence numbers |
SequenceNameJButton | Draw sequence name toggle button |
SequenceProperties | General sequence properties |
SequenceReader | This class reads sequences in FASTA and MSF format. |
SequenceSaver | This class saves sequences in FASTA format. |
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