Hierarchy For All Packages

Package Hierarchies:

org.emboss.jemboss, org.emboss.jemboss.editor, org.emboss.jemboss.gui, org.emboss.jemboss.gui.filetree, org.emboss.jemboss.gui.form, org.emboss.jemboss.gui.sequenceChooser, org.emboss.jemboss.gui.startup, org.emboss.jemboss.parser, org.emboss.jemboss.parser.acd, org.emboss.jemboss.programs, org.emboss.jemboss.server, org.emboss.jemboss.soap

Class Hierarchy

• class java.lang.Object
  • class javax.swing.text.AbstractDocument (implements javax.swing.text.Document, java.io.Serializable)
    • class javax.swing.text.PlainDocument
      • class org.emboss.jemboss.gui.form.TextFieldFloat.DecimalNumberDocument
      • class org.emboss.jemboss.gui.form.TextFieldInt.WholeNumberDocument
  • class javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • class org.emboss.jemboss.gui.SequenceListTableModel
  • class org.emboss.jemboss.parser.AcdFunResolve
  • class org.emboss.jemboss.parser.AcdVariableResolve
  • class org.emboss.jemboss.parser.AcdVarResolve
  • class org.emboss.jemboss.parser.Ajax
  • class org.emboss.jemboss.parser.AjaxUtil
  • class org.emboss.jemboss.gui.form.AlignFormat
  • class org.emboss.jemboss.parser.acd.ApplicationFields
  • class org.emboss.jemboss.parser.acd.ApplicationParam
  • class org.emboss.jemboss.programs.BatchUpdateTimer
  • class org.emboss.jemboss.gui.form.BuildJembossForm (implements java.awt.event.ActionListener)
  • class org.emboss.jemboss.gui.BuildProgramMenu
  • class org.emboss.jemboss.soap.CallAjax
  • class org.emboss.jemboss.gui.ColumnData
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class javax.swing.JComponent (implements java.io.Serializable)
        • class javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • class javax.swing.JButton (implements javax.accessibility.Accessible)
            • class org.emboss.jemboss.gui.Browser.JIconButton
          • class javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • class javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • class org.emboss.jemboss.gui.ColorMenu
              • class org.emboss.jemboss.editor.ColourMenu
              • class org.emboss.jemboss.gui.startup.ProgList.HorizontalMenu
          • class javax.swing.JToggleButton (implements javax.accessibility.Accessible)
            • class org.emboss.jemboss.editor.SequenceNameJButton
        • class javax.swing.Box (implements javax.accessibility.Accessible)
          • class org.emboss.jemboss.gui.form.LabelTextBox
          • class org.emboss.jemboss.gui.form.SetInFileCard
        • class javax.swing.JComboBox (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • class org.emboss.jemboss.gui.form.JembossComboPopup
          • class org.emboss.jemboss.gui.MemoryComboBox
        • class javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • class org.emboss.jemboss.gui.TabListCellRenderer (implements javax.swing.ListCellRenderer)
        • class javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • class org.emboss.jemboss.gui.ResultsMenuBar
        • class javax.swing.JPanel (implements javax.accessibility.Accessible)
          • class org.emboss.jemboss.gui.AdvancedOptions
          • class org.emboss.jemboss.gui.form.ApplicationNamePanel
          • class org.emboss.jemboss.gui.ColorMenu.ColorPane (implements java.awt.event.MouseListener)
          • class org.emboss.jemboss.editor.ColourMenu.ColorPane (implements java.awt.event.MouseListener)
          • class org.emboss.jemboss.editor.ColourPanel (implements java.awt.event.ActionListener)
            • class org.emboss.jemboss.editor.ColourJFrame.ResidueColourPanel
          • class org.emboss.jemboss.editor.GraphicSequenceCollection (implements java.awt.print.Printable, javax.swing.Scrollable)
            • class org.emboss.jemboss.editor.GroutGraphicSequenceCollection (implements java.awt.event.AdjustmentListener)
          • class org.emboss.jemboss.gui.ImageIconJPanel (implements javax.swing.Scrollable)
          • class org.emboss.jemboss.JembossLogo
          • class org.emboss.jemboss.gui.form.ListFilePanel
          • class org.emboss.jemboss.editor.PlotConsensus
          • class org.emboss.jemboss.gui.filetree.RemoteFileTreePanel
          • class org.emboss.jemboss.gui.ScrollPanel (implements javax.swing.Scrollable)
            • class org.emboss.jemboss.editor.Paste
            • class org.emboss.jemboss.editor.PrintAlignmentImage
          • class org.emboss.jemboss.gui.form.Separator
          • class org.emboss.jemboss.editor.SequenceJPanel (implements java.awt.event.ActionListener)
            • class org.emboss.jemboss.editor.GroutSequenceJPanel (implements org.emboss.jemboss.editor.GroutGraphicSequenceCollectionListener)
        • class javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
          • class org.emboss.jemboss.soap.ServerSetup
        • class javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • class org.emboss.jemboss.gui.DragJTable (implements java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
          • class org.emboss.jemboss.editor.PrintableJTable (implements java.awt.print.Printable)
        • class javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • class javax.swing.JEditorPane
            • class javax.swing.JTextPane
              • class org.emboss.jemboss.gui.filetree.FileEditorDisplay
          • class javax.swing.JTextArea
            • class org.emboss.jemboss.gui.sequenceChooser.TextAreaSink (implements java.awt.dnd.DropTargetListener)
          • class javax.swing.JTextField (implements javax.swing.SwingConstants)
            • class org.emboss.jemboss.gui.form.TextFieldSink (implements java.awt.dnd.DropTargetListener)
              • class org.emboss.jemboss.gui.form.TextFieldFloat
              • class org.emboss.jemboss.gui.form.TextFieldInt
        • class javax.swing.JToolTip (implements javax.accessibility.Accessible)
          • class org.emboss.jemboss.gui.form.MultiLineToolTipUI.MyToolTip
        • class javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • class org.emboss.jemboss.gui.filetree.DragTree (implements java.awt.event.ActionListener, java.awt.dnd.Autoscroll, java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
          • class org.emboss.jemboss.gui.filetree.RemoteDragTree (implements java.awt.event.ActionListener, java.awt.dnd.Autoscroll, java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
      • class java.awt.Panel (implements javax.accessibility.Accessible)
        • class java.applet.Applet
          • class javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • class org.emboss.jemboss.editor.AlignApplet
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class org.emboss.jemboss.editor.AlignJFrame
              • class org.emboss.jemboss.editor.GroutAlignJFrame (implements org.emboss.jemboss.editor.GroutGraphicSequenceCollectionListener)
            • class org.emboss.jemboss.soap.AuthPopup
            • class org.emboss.jemboss.gui.Browser (implements java.awt.event.ActionListener, javax.swing.event.HyperlinkListener)
            • class org.emboss.jemboss.editor.ColourJFrame
            • class org.emboss.jemboss.editor.ConsensusOptions
            • class org.emboss.jemboss.editor.IDTableJFrame
            • class org.emboss.jemboss.gui.LaunchJalView
            • class org.emboss.jemboss.gui.filetree.LocalAndRemoteFileTreeFrame
            • class org.emboss.jemboss.editor.MatrixJFrame
            • class org.emboss.jemboss.editor.PatternJFrame
            • class org.emboss.jemboss.editor.PrettyPlotJFrame (implements java.awt.event.ActionListener)
            • class org.emboss.jemboss.gui.SequenceList
            • class org.emboss.jemboss.gui.ShowResultSet
            • class org.emboss.jemboss.gui.ShowSavedResults
  • class javax.swing.plaf.ComponentUI
    • class javax.swing.plaf.ComboBoxUI
      • class javax.swing.plaf.basic.BasicComboBoxUI
        • class org.emboss.jemboss.gui.form.JembossComboPopup.myComboUI
    • class javax.swing.plaf.ToolTipUI
      • class org.emboss.jemboss.gui.form.MultiLineToolTipUI
  • class org.emboss.jemboss.editor.Consensus
  • class org.emboss.jemboss.gui.sequenceChooser.CutNPasteTextArea
  • class org.emboss.jemboss.gui.startup.Database
  • class javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • class org.emboss.jemboss.gui.filetree.FileNode (implements java.io.Serializable, java.awt.datatransfer.Transferable)
    • class org.emboss.jemboss.gui.filetree.RemoteFileNode (implements java.io.Serializable, java.awt.datatransfer.Transferable)
  • class org.emboss.jemboss.parser.Dependent
  • class java.util.EventObject (implements java.io.Serializable)
    • class java.beans.PropertyChangeEvent
      • class org.emboss.jemboss.editor.GroutAlignJFrameEvent
      • class org.emboss.jemboss.editor.GroutGraphicSequenceCollectionEvent
  • class org.emboss.jemboss.gui.sequenceChooser.FileChooser
  • class javax.swing.filechooser.FileFilter
    • class org.emboss.jemboss.gui.sequenceChooser.SequenceFilter
  • class org.emboss.jemboss.soap.FileList
  • class org.emboss.jemboss.FileManager
  • class org.emboss.jemboss.soap.FileRoots (implements java.io.Serializable)
  • class org.emboss.jemboss.gui.filetree.FileSave
  • class org.emboss.jemboss.gui.filetree.FileSaving
  • class org.emboss.jemboss.soap.GetACD
  • class org.emboss.jemboss.soap.GetHelp
  • class org.emboss.jemboss.soap.GetWossname
  • class org.emboss.jemboss.gui.sequenceChooser.InputSequenceAttributes
  • class org.emboss.jemboss.Jemboss (implements java.awt.event.ActionListener)
  • class org.emboss.jemboss.server.JembossAuthServer
  • class org.emboss.jemboss.server.JembossFileAuthServer
  • class org.emboss.jemboss.server.JembossFileServer
  • class org.emboss.jemboss.JembossJarUtil
  • class org.emboss.jemboss.JembossParams
  • class org.emboss.jemboss.programs.JembossProcess
  • class org.emboss.jemboss.soap.JembossRun
  • class org.emboss.jemboss.server.JembossServer
  • class org.emboss.jemboss.programs.ListFile
  • class org.emboss.jemboss.soap.MakeFileSafe
  • class org.emboss.jemboss.editor.Matrix
  • class java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • class org.emboss.jemboss.editor.ColourPanel.PopupListener
    • class org.emboss.jemboss.gui.filetree.DragTree.PopupListener
    • class org.emboss.jemboss.gui.filetree.RemoteDragTree.PopupListener
    • class org.emboss.jemboss.editor.SequenceJPanel.PopupListener
  • class org.emboss.jemboss.gui.sequenceChooser.OutputSequenceAttributes
  • class org.emboss.jemboss.parser.ParseAcd
  • class org.emboss.jemboss.soap.PendingResults
  • class org.emboss.jemboss.gui.form.PlafMacros (implements javax.swing.SwingConstants)
  • class org.emboss.jemboss.editor.PrintAlignment
  • class org.emboss.jemboss.soap.PrivateRequest
  • class org.emboss.jemboss.gui.startup.ProgList
  • class org.emboss.jemboss.soap.PublicRequest
  • class org.emboss.jemboss.gui.form.ReportFormat
  • class org.emboss.jemboss.programs.ResultList
  • class org.emboss.jemboss.programs.ResultsUpdateTimer
  • class org.emboss.jemboss.programs.RunEmbossApplication
  • class org.emboss.jemboss.programs.RunEmbossApplication2
  • class org.emboss.jemboss.gui.form.SectionPanel
  • class org.emboss.jemboss.editor.Sequence
    • class org.emboss.jemboss.editor.GroutSequence
  • class org.emboss.jemboss.gui.SequenceData (implements java.io.Serializable, java.awt.datatransfer.Transferable)
  • class org.emboss.jemboss.editor.SequenceProperties
  • class org.emboss.jemboss.editor.SequenceReader
  • class org.emboss.jemboss.editor.SequenceSaver
  • class org.emboss.jemboss.gui.form.SetOutFileCard
  • class org.emboss.jemboss.gui.SetUpMenuBar
  • class org.emboss.jemboss.soap.ShowDB
  • class org.emboss.jemboss.gui.ShowResultSet.GroutPanelListener (implements java.awt.event.ActionListener)
  • class org.emboss.jemboss.gui.SwingWorker
  • class org.emboss.jemboss.gui.SwingWorker.ThreadVar
  • class org.emboss.jemboss.server.TestPrivateServer
  • class org.emboss.jemboss.server.TestPublicServer
  • class java.lang.Thread (implements java.lang.Runnable)
    • class org.emboss.jemboss.server.AppendToLogFileThread
    • class org.emboss.jemboss.server.JembossThread
    • class org.emboss.jemboss.programs.RunEmbossApplication2.StderrHandler
    • class org.emboss.jemboss.programs.RunEmbossApplication2.StdoutHandler
    • class org.emboss.jemboss.gui.SplashThread
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class org.emboss.jemboss.soap.JembossSoapException
  • class java.util.TimerTask (implements java.lang.Runnable)
    • class org.emboss.jemboss.programs.BatchUpdateTimer.RemindTask
    • class org.emboss.jemboss.programs.ResultsUpdateTimer.ResultsTask
  • class java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • class org.emboss.jemboss.editor.AlignJFrame.winExit
    • class org.emboss.jemboss.editor.GroutAlignJFrame.winExit
    • class org.emboss.jemboss.Jemboss.winExit

Interface Hierarchy

• interface org.emboss.jemboss.editor.GroutAlignJFrameListener
• interface org.emboss.jemboss.editor.GroutGraphicSequenceCollectionListener