compatibility for Java 1.5 incorporated
Jemboss Graphics beta release
favourites funxtionality added
more features for the Jemboss Alignment Editor.
command line version available of the Alignment Editor
features added to the Jemboss Alignment Editor. This includes
a colour scheme for identical and positive matches (in the
same fashion as prettyplot). Also identity tables can be calculated
for pairs of sequences.
integrated help tool bar added to the browser.
installation script includes automatic checking for gd, png
and zlib libraries.
drag and drop within file managers implemented, along the
same lines as the drag and drop between local and remote file
managers. Multiple selection of files is supported for deletion,
however multiple file drag and drop is not yet supported.
code is now in place for integration of new EMBOSS
server code reports logs messages in a separate thread and
also reports the total and free memory.
new Jemboss Alignment Editor available from Jemboss.
installation script includes options for embassy packages.
bug fixes include initial ACD options for 'showdb' are correct.
first release of Jemboss that uses the new Apache Axis (1.0) for the SOAP
protocol. The client and server now use Axis calls to communicate and for
speed-up of the interface launching process; wossname.jar (containing the
output of wossname) is wrapped with the client and the server is just
queried for the database names and available scoring matrices on startup.
This means that the interface can almost immediately spring into life and
EMBOSS applications selected while the SOAP connection is made with the
the installation script has been improved to simplify installation
of a server.
the ability to set up both client-server and standalone modes with the
saving of the users local working directory between sessions.