HMMER Applications
The HMMER programs are EMBOSS conversions of the programs in Sean Eddy's HMMER package, version 2.1.1 (converted in August 2001).
The HMMER versions of these programs all have the prefix "o" to distinguish them from the original programs and from the latest version which has the prefix "e" in the HMMERNEW package.
Applications in the current hmmer release
| Program name | Description |
|---|---|
| oalistat | Statistics for multiple alignment files |
| ohmmalign | Align sequences with an HMM |
| ohmmbuild | Build HMM |
| ohmmcalibrate | Calibrate a hidden Markov model |
| ohmmconvert | Convert between HMM formats |
| ohmmemit | Extract HMM sequences |
| ohmmfetch | Extract HMM from a database |
| ohmmindex | Index an HMM database |
| ohmmpfam | Align single sequence with an HMM |
| ohmmsearch | Search sequence database with an HMM |