Protein motif searches

Program nameDescription
antigenic Find antigenic sites in proteins
epestfind Find PEST motifs as potential proteolytic cleavage sites
fuzzpro Search for patterns in protein sequences
fuzztran Search for patterns in protein sequences (translated)
patmatdb Search protein sequences with a sequence motif
patmatmotifs Scan a protein sequence with motifs from the PROSITE database
preg Regular expression search of protein sequence(s)
pscan Scan protein sequence(s) with fingerprints from the PRINTS database
sigcleave Report on signal cleavage sites in a protein sequence
elipop Predict lipoproteins
eiprscan Motif detection
omeme Motif detection
emast Motif detection
ememe Multiple EM for motif elicitation
ememetext Multiple EM for motif elicitation, text file only