Hidden markov model analysis

Program nameDescription
ealistat Statistics for multiple alignment files
ehmmalign Align sequences with an HMM
ehmmbuild Build HMM
ehmmcalibrate Calibrate a hidden Markov model
ehmmconvert Convert between HMM formats
ehmmemit Extract HMM sequences
ehmmfetch Extract HMM from a database
ehmmindex Index an HMM database
ehmmpfam Align single sequence with an HMM
ehmmsearch Search sequence database with an HMM