PHYLIP Applications
The PHYLIP programs in this EMBASSY package are ported from release 3.572. PHYLIP 3.6 has been converted as PHYLIPNEW.
Applications in the current phylip release
| Program name | Description |
|---|---|
| eclique | Largest clique program |
| econsense | Majority-rule and strict consensus tree |
| econtml | Continuous character Maximum Likelihood method |
| econtrast | Continuous character Contrasts |
| ednacomp | DNA compatibility algorithm |
| ednadist | Nucleic acid sequence Distance Matrix program |
| ednainvar | Nucleic acid sequence Invariants method |
| ednaml | Phylogenies from nucleic acid Maximum Likelihood |
| ednamlk | Phylogenies from nucleic acid Maximum Likelihood with clock |
| ednapars | DNA parsimony algorithm |
| ednapenny | Penny algorithm for DNA |
| edollop | Dollo and polymorphism parsimony algorithm |
| edolpenny | Penny algorithm Dollo or polymorphism |
| efactor | Multistate to binary recoding program |
| efitch | Fitch-Margoliash and Least-Squares Distance Methods |
| egendist | Genetic Distance Matrix program |
| ekitsch | Fitch-Margoliash method with contemporary tips |
| emix | Mixed parsimony algorithm |
| eneighbor | Phylogenies from distance matrix by N-J or UPGMA method |
| epenny | Penny algorithm, branch-and-bound |
| eprotdist | Protein distance algorithm |
| eprotpars | Protein parsimony algorithm |
| erestml | Restriction site Maximum Likelihood method |
| eseqboot | Bootstrapped sequences algorithm |