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PROTEIN MOTIFS |
Protein motif searches
Program name | Description |
---|---|
antigenic | Finds antigenic sites in proteins |
digest | Reports on protein proteolytic enzyme or reagent cleavage sites |
epestfind | Finds PEST motifs as potential proteolytic cleavage sites |
fuzzpro | Search for patterns in protein sequences |
fuzztran | Search for patterns in protein sequences (translated) |
helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
oddcomp | Identify proteins with specified sequence word composition |
patmatdb | Searches protein sequences with a sequence motif |
patmatmotifs | Scan a protein sequence with motifs from the PROSITE database |
pepcoil | Predicts coiled coil regions in protein sequences |
preg | Regular expression search of protein sequence(s) |
pscan | Scans protein sequence(s) with fingerprints from the PRINTS database |
sigcleave | Reports on signal cleavage sites in a protein sequence |
echlorop | Reports presence of chloroplast transit peptides |
elipop | Prediction of lipoproteins |
enetnglyc | Reports N-glycosylation sites in human proteins |
enetoglyc | Reports mucin type GalNAc O-glycosylation sites in mammalian proteins |
enetphos | Reports ser, thr and tyr phosphorylation sites in eukaryotic proteins |
eprop | Reports propeptide cleavage sites in proteins |
esignalp | Reports protein signal cleavage sites |
etmhmm | Reports transmembrane helices |
eyinoyang | Reports O-(beta)-GlcNAc attachment sites |
eiprscan | Motif detection |
omeme | Motif detection |
emast | Motif detection |
ememe | Multiple EM for Motif Elicitation |
ememetext | Multiple EM for Motif Elicitation. Text file only |