Predictions of genes and other genomic features

Program nameDescription
getorf Finds and extracts open reading frames (ORFs)
marscan Finds MAR/SAR sites in nucleic sequences
plotorf Plot potential open reading frames
showorf Pretty output of DNA translations
sixpack Display a DNA sequence with 6-frame translation and ORFs
syco Synonymous codon usage Gribskov statistic plot
tcode Fickett TESTCODE statistic to identify protein-coding DNA
wobble Wobble base plot