Holds arrays describing codon usage The length is known and held internally.
AjPCod is implemented as a pointer to a C data structure.
| Name | Description |
|---|---|
| AjSCod | |
| AjOCod |
| Name | Type | Description |
|---|---|---|
| Name | Name of codon file | |
| Species | Species | |
| Division | Division (gbbct etc.) | |
| Release | Database name and release | |
| Desc | Description | |
| CdsCount | Number of coding sequences used | |
| CodonCount | Number of individual codons used | |
| aa | Amino acid represented by codon | |
| num | Number of codons | |
| tcount | Codons per thousand | |
| fraction | Fraction of amino acids of this type | |
| back | Index of favoured amino acid for backtranslation | |
| GeneticCode | Genetic code NCBI number to match amino acids to codons. | |
| Padding | Padding to alignment boundary |