ajseq


Data type AjPSeqCvt

Sequence conversion data. Used to convert a sequence to binary.

Constructor(s)

NameDescription
ajSeqCvtNewCreates from a character string of valid bases.
ajSeqCvtNewTextCreates from a character string of valid bases.
ajSeqCvtNewZeroCreates from a character string of valid bases.
ajSeqCvtNewZeroSCreates from an array of strings of valid bases.
ajSeqCvtNewZeroSSCreates from an array of strings of valid bases.

Output

NameDescription
ajSeqCvtTraceReports on contents for debugging

Alias name(s)

NameDescription
AjSSeqCvt
AjOSeqCvt

Attributes

NameTypeDescription
sizeNumber of characters in table, usually all possible characters.
lenNumber of characters defined
missingIndex of the missing character value
nrlabelsNumber of row labels
basesThe bases which can be converted
rlabelsRow labels
clabelsColumn labels
tableBinary character value for each character in bases
nclabelsNumber of column labels
PaddingPadding to alignment boundary