ajseqread


Enum SeqEPrefixGenbank

Genbank/Refseq/GenPept/Codata record type

Enumerated value(s)

Name
GB_UNKUnknown prefix
GB_ACAccession
GB_BASEBase count
GB_CCComment
GB_DEFDefinition
GB_FEATFeature
GB_IDLocus
GB_KEYKeywords
GB_ORIOrigin
GB_REFReference
GB_SRCSource organism
GB_SQSequence
GB_VERVersion
GB_WPGCG header
GB_ENDFinal // record
GB_MOREBlank continuation
GB_MAXBeyond last value


Enum SeqEPrefixGenbankMore

Genbank/Refseq/GenPept/Codata subrecord type

Enumerated value(s)

Name
GB_MORE_UNKUnknown prefix
GB_MORE_STDStandard (non-prefix) line
GB_MORE_AUTAUTHORS
GB_MORE_JNLJOURNAL
GB_MORE_ORGORGANISM
GB_MORE_TITTITLE
GB_MORE_MOREBlank prefix of at least 10 characters
GB_MORE_MAXBeyond last value


Enum SeqEPrefixSwiss

SwissProt/EMBL 2-character line prefix

Enumerated value(s)

Name
SWISS_UNKUnknown prefix
SWISS_ACAccession
SWISS_ASEMBL AS line
SWISS_AVStaden experiment AV line
SWISS_CCComment
SWISS_COEMBL contig entry
SWISS_DEDescription
SWISS_DRDatabase reference
SWISS_DTDate
SWISS_EXStaden experiment data
SWISS_FHEMBL feature header
SWISS_FTFeature
SWISS_GNGene name
SWISS_IDIdentifier line
SWISS_IVEMBL IV record
SWISS_KWKeyword
SWISS_OCOrganism classification
SWISS_OGOrganelle
SWISS_OHOrganism host
SWISS_OSSpecies
SWISS_OXNCBI TaxID
SWISS_PESwissprot evidence
SWISS_RAReference authors
SWISS_RCReference comment
SWISS_RGReference RG
SWISS_RLReference location
SWISS_RNReference number
SWISS_RPReference RP
SWISS_RTReference RT
SWISS_RXReference RX
SWISS_SQSequence
SWISS_SVSeqVersion
SWISS_WPGCG header
SWISS_XXSpacer
SWISS_ENDFinal // record
SWISS_MOREBlank continuation (sequence)
SWISS_MAXBeyond last value


Enum SeqEDesSwiss

SwissProt description codes

Enumerated value(s)

Name
SWISS_DES_UNKUnknown code
SWISS_DES_ALTAltName:
SWISS_DES_CONTContains:
SWISS_DES_FLGFlags:
SWISS_DES_INCIncludes:
SWISS_DES_RECRecName:
SWISS_DES_SUBSubName:
SWISS_DES_MAXBeyond last value


Enum SeqESubSwiss

SwissProt description subcodes

Enumerated value(s)

Name
SWISS_SUB_UNKUnknown code
SWISS_SUB_ALLERAllergen=
SWISS_SUB_BIOTECHBiotech=
SWISS_SUB_CDACD_antigen=
SWISS_SUB_ECEC=
SWISS_SUB_FULLFull=
SWISS_SUB_INNINN=
SWISS_SUB_SHORTShort=
SWISS_SUB_MAXBeyond last value