| Name | Type | Description |
|---|
| Name | Name (ID)
|
| Acc | Accession number (primary only)
|
| Sv | SeqVersion number
|
| Gi | GI NCBI version number
|
| Desc | One-line description
|
| Tax | Main taxonomy (species)
|
| Organelle | Organelle taxonomy
|
| Type | Type N or P
|
| Outputtype | Output sequence known type
|
| Molecule | Molecule type
|
| Class | Class of entry
|
| Division | Database division
|
| Db | Database name from input name
|
| Setdb | Database name from input command line
|
| Setoutdb | Database name from command line
|
| Full | Full name
|
| Date | Dates
|
| Doc | Obsolete - see TextPtr
|
| Rev | true: to be reverse-complemented
|
| Circular | true: circular nucleotide molecule
|
| Usa | USA for re-reading
|
| Ufo | UFO for re-reading
|
| Fttable | Feature table
|
| Ftquery | Feature table output
|
| FtFormat | Feature output format (if not in UFO)
|
| FtFilename | Feature output filename (if not in UFO)
|
| Informatstr | Input format
|
| Formatstr | Output format
|
| EType | unused, obsolete
|
| Format | Output format index
|
| Filename | Output filename (if not in USA)
|
| Directory | Output firectory
|
| Entryname | Entry name
|
| Acclist | Secondary accessions
|
| Keylist | Keyword list
|
| Taxlist | Taxonomy list (just species for now)
|
| Reflist | References (citations)
|
| Cmtlist | Comment block list
|
| Xreflist | Database cross reference list
|
| Seq | The sequence
|
| File | Output file
|
| Knownfile | Already open output file (we don't close this one)
|
| Single | If true, single sequence in each file (-ossingle)
|
| Features | If true, save features with sequence or in file
|
| Extension | File extension
|
| Accuracy | Accuracy values (one per base) from base calling
|
| Savelist | Previous sequences saved for later output
(e.g. MSF format)
|
| Count | Number of sequences
|
| Offset | offset from start
|