| Name | Type | Description |
|---|
| seqname | Sequence name
|
| cod | Matrix name
|
| acc | Matrix accession number
|
| tit | Matrix title
|
| pat | Pattern
|
| n | Number of motifs in fingerprint
|
| len | Lengths of motifs
|
| thresh | % of maximum score for matrix
|
| max | Maximum score for matrix
|
| element | Number of matching element
|
| start | Start of match
|
| end | End of match
|
| score | Score of match
|
| hpe | Hits per element (so far)
|
| hpm | Hits per motif (so far)
|
| all | Can be set if all elements match
|
| ordered | Can be set if "all" and in order
|
| forward | on forward strand
|
| mm | Number of mismatches
|
| cut1 | Undocumented
|
| cut2 | Undocumented
|
| cut3 | Undocumented
|
| cut4 | Undocumented
|
| circ12 | Circular for cut1 and/or cut2
|
| circ34 | Circular for cut3 and/or cut4
|
| iso | Holds names of isoschizomers
|