embcom.c

Function embComComplexity

Complexity calculation

Synopsis

Prototype

void embComComplexity (
      const char* seq,
      const char* name,
      ajint len,
      ajint jmin,
      ajint jmax,
      ajint l,
      ajint step,
      ajint sim,
      ajint freq,
      ajint omnia,
      AjPFile fp,
      AjPFile pf,
      ajint print,
      ajint num_seq,
      float* MedValue
);

Input

seq:(Input)Sequence
name:(Input)Sequence name
len:(Input)Sequence length
jmin:(Input)Minimum
jmax:(Input)Maximum
l:(Input)Window length
step:(Input)Step size
sim:(Input)Simulation count
freq:(Input)Frequency calculation (boolean)
omnia:(Input)All sequences (boolean)
print:(Input)Print (boolean)
num_seq:(Input)Number of sequence

Output

MedValue:(Output)Results

Input & Output

fp:(Modify)Output file
pf:(Modify)Temp file

Returns

void:No return value

Description

Complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 3.0.0

Function embComWriteFile

Write output file for complexity calculation

Synopsis

Prototype

void embComWriteFile (
      AjPFile fp,
      ajint jmin,
      ajint jmax,
      ajint lwin,
      ajint step,
      ajint sim
);

Input

jmin:(Input)Minimum
jmax:(Input)Maximum
lwin:(Input)Window
step:(Input)Step size
sim:(Input)Simulation count

Input & Output

fp:(Modify)Output file

Returns

void:No return value

Description

Write output file for complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 3.0.0

Function embComWriteValueOfSeq

Output sequence values for complexity calculation

Synopsis

Prototype

void embComWriteValueOfSeq (
      AjPFile fp,
      ajint n,
      const char* name,
      ajint len,
      float MedValue
);

Input

n:(Input)Sequence number
name:(Input)Sequence name
len:(Input)Sequece length
MedValue:(Input)Mean value

Input & Output

fp:(Modify)Output file

Returns

void:No return value

Description

Output sequence values for complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 3.0.0

Function embComUnused

Unused functions in embcom to avoid compiler warnings

Synopsis

Prototype

void embComUnused (void);

Returns

void:No return value

Description

Unused functions in embcom to avoid compiler warnings

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 3.0.0