The NUCLEUS Library Documentation: CVS (developers) release

Notes



This documentation is automatically derived from the comments in the source file function headers.

The functions are documented in the order in which they appear in the source files.

This documentation and the source code are also indexed in SRS as databases EFUNCREL and EDATAREL.

The pages are generated by a Perl script which is easily modifiable.

The most useful library sections for new developers are marked with "***"


Sequence Alignment

See descriptions of functions

Comments

See descriptions of functions

Consensus

See descriptions of functions

Data Files

See descriptions of functions

Database Index

See descriptions of functions and data types

Domainatrix Methods

See descriptions of functions

Domain Methods

See descriptions of functions

EST Methods

See descriptions of functions and data types

Exit Methods

See descriptions of functions

Groups

See descriptions of functions and data types

Protein proerties

See descriptions of functions

Indexing

See descriptions of functions and data types

Initialization

See descriptions of functions

Comparison Matrices

See descriptions of functions and data types

Miscellaneous Methods

See descriptions of functions and data types

Molecular fragments

See descriptions of functions and data types

Word (n-mer) Methods

See descriptions of functions

Pattern Matching Methods

See descriptions of functions and data types

Protein data bank

See descriptions of functions

Sequence Properties

See descriptions of functions

Reading data files

See descriptions of functions

Show (Display) Methods

See descriptions of functions and data types

Signature Methods

See descriptions of functions and data types

Word Methods

See descriptions of functions

Xyz Coordinate Methods

See descriptions of functions