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EMBOSS source code
EMBOSS Documentation
BLAST tools
Tools for generating BLAST format databases are contained in the NCBI toolkit which can be obtained from NCBI at:
SRS software
The SRS software can be obtained from Lion Bioscience. This is a commercial package but at the time of writing is available free of charge to academic institutions.
Various useful utilities including the wget program are available from the Free Software Foundation.

Peter Rice 2007-04-26