######################################## # Program: garnier # Rundate: Fri Nov 08 15:45:44 2002 # Report_format: diffseq # Report_file: report.diffseq ######################################## #======================================= # # Sequence: 100K_RAT from: 1 to: 889 # HitCount: 206 # # DCH = 0, DCS = 0 # # Please cite: # Garnier, Osguthorpe and Robson (1978) J. Mol. Biol. 120:97-120 # # #======================================= 100K_RAT 1-6 Length: 6 Sequence: MMSARG Sequence: 0 Length: 0 100K_RAT 7-7 Length: 1 Sequence: D Sequence: 0 Length: 0 100K_RAT 8-17 Length: 10 Sequence: FLNYALSLMR Sequence: 0 Length: 0 100K_RAT 18-20 Length: 3 Sequence: SHN Sequence: 0 Length: 0 100K_RAT 21-25 Length: 5 Sequence: DEHSD Sequence: 0 Length: 0 100K_RAT 26-28 Length: 3 Sequence: VLP Sequence: 0 Length: 0 100K_RAT 29-38 Length: 10 Sequence: VLDVCSLKHV Sequence: 0 Length: 0 100K_RAT 39-40 Length: 2 Sequence: AY Sequence: 0 Length: 0 100K_RAT 41-50 Length: 10 Sequence: VFQALIYWIK Sequence: 0 Length: 0 100K_RAT 51-53 Length: 3 Sequence: AMN Sequence: 0 Length: 0 100K_RAT 54-55 Length: 2 Sequence: QQ Sequence: 0 Length: 0 100K_RAT 56-62 Length: 7 Sequence: TTLDTPQ Sequence: 0 Length: 0 100K_RAT 63-77 Length: 15 Sequence: LERKRTRELLELGID Sequence: 0 Length: 0 100K_RAT 78-78 Length: 1 Sequence: N Sequence: 0 Length: 0 100K_RAT 79-85 Length: 7 Sequence: EDSEHEN Sequence: 0 Length: 0 100K_RAT 86-88 Length: 3 Sequence: DDD Sequence: 0 Length: 0 100K_RAT 89-89 Length: 1 Sequence: T Sequence: 0 Length: 0 100K_RAT 90-91 Length: 2 Sequence: SQ Sequence: 0 Length: 0 100K_RAT 92-93 Length: 2 Sequence: SA Sequence: 0 Length: 0 100K_RAT 94-96 Length: 3 Sequence: TLN Sequence: 0 Length: 0 100K_RAT 97-99 Length: 3 Sequence: DKD Sequence: 0 Length: 0 100K_RAT 100-100 Length: 1 Sequence: D Sequence: 0 Length: 0 100K_RAT 101-101 Length: 1 Sequence: E Sequence: 0 Length: 0 100K_RAT 102-103 Length: 2 Sequence: SL Sequence: 0 Length: 0 100K_RAT 104-107 Length: 4 Sequence: PAET Sequence: 0 Length: 0 100K_RAT 108-109 Length: 2 Sequence: GQ Sequence: 0 Length: 0 100K_RAT 110-112 Length: 3 Sequence: NHP Sequence: 0 Length: 0 100K_RAT 113-113 Length: 1 Sequence: F Sequence: 0 Length: 0 100K_RAT 114-114 Length: 1 Sequence: F Sequence: 0 Length: 0 100K_RAT 115-121 Length: 7 Sequence: RRSDSMT Sequence: 0 Length: 0 100K_RAT 122-123 Length: 2 Sequence: FL Sequence: 0 Length: 0 100K_RAT 124-125 Length: 2 Sequence: GC Sequence: 0 Length: 0 100K_RAT 126-130 Length: 5 Sequence: IPPNP Sequence: 0 Length: 0 100K_RAT 131-131 Length: 1 Sequence: F Sequence: 0 Length: 0 100K_RAT 132-133 Length: 2 Sequence: EV Sequence: 0 Length: 0 100K_RAT 134-144 Length: 11 Sequence: PLAEAIPLADQ Sequence: 0 Length: 0 100K_RAT 145-145 Length: 1 Sequence: P Sequence: 0 Length: 0 100K_RAT 146-146 Length: 1 Sequence: H Sequence: 0 Length: 0 100K_RAT 147-152 Length: 6 Sequence: LLQPNA Sequence: 0 Length: 0 100K_RAT 153-154 Length: 2 Sequence: RK Sequence: 0 Length: 0 100K_RAT 155-156 Length: 2 Sequence: ED Sequence: 0 Length: 0 100K_RAT 157-158 Length: 2 Sequence: LF Sequence: 0 Length: 0 100K_RAT 159-161 Length: 3 Sequence: GRP Sequence: 0 Length: 0 100K_RAT 162-164 Length: 3 Sequence: SQG Sequence: 0 Length: 0 100K_RAT 165-165 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 166-167 Length: 2 Sequence: YS Sequence: 0 Length: 0 100K_RAT 168-173 Length: 6 Sequence: SSAGSG Sequence: 0 Length: 0 100K_RAT 174-174 Length: 1 Sequence: K Sequence: 0 Length: 0 100K_RAT 175-179 Length: 5 Sequence: CLVEV Sequence: 0 Length: 0 100K_RAT 180-209 Length: 30 Sequence: TMDRNCLEVLPTKMSYAANLKNVMNMQNRQ Sequence: 0 Length: 0 100K_RAT 210-213 Length: 4 Sequence: KKAG Sequence: 0 Length: 0 100K_RAT 214-224 Length: 11 Sequence: EDQSMLAEEAD Sequence: 0 Length: 0 100K_RAT 225-225 Length: 1 Sequence: S Sequence: 0 Length: 0 100K_RAT 226-231 Length: 6 Sequence: SKPGPS Sequence: 0 Length: 0 100K_RAT 232-248 Length: 17 Sequence: AHDVAAQLKSSLLAEIG Sequence: 0 Length: 0 100K_RAT 249-251 Length: 3 Sequence: LTE Sequence: 0 Length: 0 100K_RAT 252-253 Length: 2 Sequence: SE Sequence: 0 Length: 0 100K_RAT 254-255 Length: 2 Sequence: GP Sequence: 0 Length: 0 100K_RAT 256-259 Length: 4 Sequence: PLTS Sequence: 0 Length: 0 100K_RAT 260-261 Length: 2 Sequence: FR Sequence: 0 Length: 0 100K_RAT 262-266 Length: 5 Sequence: PQCSF Sequence: 0 Length: 0 100K_RAT 267-269 Length: 3 Sequence: MGM Sequence: 0 Length: 0 100K_RAT 270-277 Length: 8 Sequence: VISHDMLL Sequence: 0 Length: 0 100K_RAT 278-279 Length: 2 Sequence: GR Sequence: 0 Length: 0 100K_RAT 280-281 Length: 2 Sequence: WR Sequence: 0 Length: 0 100K_RAT 282-286 Length: 5 Sequence: LSLEL Sequence: 0 Length: 0 100K_RAT 287-293 Length: 7 Sequence: FGRVFME Sequence: 0 Length: 0 100K_RAT 294-299 Length: 6 Sequence: DVGAEP Sequence: 0 Length: 0 100K_RAT 300-300 Length: 1 Sequence: G Sequence: 0 Length: 0 100K_RAT 301-301 Length: 1 Sequence: S Sequence: 0 Length: 0 100K_RAT 302-304 Length: 3 Sequence: ILT Sequence: 0 Length: 0 100K_RAT 305-305 Length: 1 Sequence: E Sequence: 0 Length: 0 100K_RAT 306-307 Length: 2 Sequence: LG Sequence: 0 Length: 0 100K_RAT 308-326 Length: 19 Sequence: GFEVKESKFRREMEKLRNQ Sequence: 0 Length: 0 100K_RAT 327-328 Length: 2 Sequence: QS Sequence: 0 Length: 0 100K_RAT 329-329 Length: 1 Sequence: R Sequence: 0 Length: 0 100K_RAT 330-331 Length: 2 Sequence: DL Sequence: 0 Length: 0 100K_RAT 332-334 Length: 3 Sequence: SLE Sequence: 0 Length: 0 100K_RAT 335-343 Length: 9 Sequence: VDRDRDLLI Sequence: 0 Length: 0 100K_RAT 344-348 Length: 5 Sequence: QQTMR Sequence: 0 Length: 0 100K_RAT 349-349 Length: 1 Sequence: Q Sequence: 0 Length: 0 100K_RAT 350-350 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 351-359 Length: 9 Sequence: NNHFGRRCA Sequence: 0 Length: 0 100K_RAT 360-361 Length: 2 Sequence: TT Sequence: 0 Length: 0 100K_RAT 362-369 Length: 8 Sequence: PMAVHRVK Sequence: 0 Length: 0 100K_RAT 370-373 Length: 4 Sequence: VTFK Sequence: 0 Length: 0 100K_RAT 374-376 Length: 3 Sequence: DEP Sequence: 0 Length: 0 100K_RAT 377-378 Length: 2 Sequence: GE Sequence: 0 Length: 0 100K_RAT 379-382 Length: 4 Sequence: GSGV Sequence: 0 Length: 0 100K_RAT 383-388 Length: 6 Sequence: ARSFYT Sequence: 0 Length: 0 100K_RAT 389-395 Length: 7 Sequence: AIAQAFL Sequence: 0 Length: 0 100K_RAT 396-396 Length: 1 Sequence: S Sequence: 0 Length: 0 100K_RAT 397-399 Length: 3 Sequence: NEK Sequence: 0 Length: 0 100K_RAT 400-400 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 401-402 Length: 2 Sequence: PN Sequence: 0 Length: 0 100K_RAT 403-403 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 404-404 Length: 1 Sequence: D Sequence: 0 Length: 0 100K_RAT 405-405 Length: 1 Sequence: C Sequence: 0 Length: 0 100K_RAT 406-407 Length: 2 Sequence: IQ Sequence: 0 Length: 0 100K_RAT 408-412 Length: 5 Sequence: NANKG Sequence: 0 Length: 0 100K_RAT 413-414 Length: 2 Sequence: TH Sequence: 0 Length: 0 100K_RAT 415-420 Length: 6 Sequence: TSLMQR Sequence: 0 Length: 0 100K_RAT 421-428 Length: 8 Sequence: LRNRGERD Sequence: 0 Length: 0 100K_RAT 429-438 Length: 10 Sequence: REREREREMR Sequence: 0 Length: 0 100K_RAT 439-440 Length: 2 Sequence: RS Sequence: 0 Length: 0 100K_RAT 441-445 Length: 5 Sequence: SGLRA Sequence: 0 Length: 0 100K_RAT 446-446 Length: 1 Sequence: G Sequence: 0 Length: 0 100K_RAT 447-447 Length: 1 Sequence: S Sequence: 0 Length: 0 100K_RAT 448-462 Length: 15 Sequence: RRDRDRDFRRQLSID Sequence: 0 Length: 0 100K_RAT 463-465 Length: 3 Sequence: TRP Sequence: 0 Length: 0 100K_RAT 466-466 Length: 1 Sequence: F Sequence: 0 Length: 0 100K_RAT 467-468 Length: 2 Sequence: RP Sequence: 0 Length: 0 100K_RAT 469-469 Length: 1 Sequence: A Sequence: 0 Length: 0 100K_RAT 470-470 Length: 1 Sequence: S Sequence: 0 Length: 0 100K_RAT 471-472 Length: 2 Sequence: EG Sequence: 0 Length: 0 100K_RAT 473-473 Length: 1 Sequence: N Sequence: 0 Length: 0 100K_RAT 474-476 Length: 3 Sequence: PSD Sequence: 0 Length: 0 100K_RAT 477-481 Length: 5 Sequence: DPDPL Sequence: 0 Length: 0 100K_RAT 482-487 Length: 6 Sequence: PAHRQA Sequence: 0 Length: 0 100K_RAT 488-488 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 489-491 Length: 3 Sequence: GER Sequence: 0 Length: 0 100K_RAT 492-493 Length: 2 Sequence: LY Sequence: 0 Length: 0 100K_RAT 494-495 Length: 2 Sequence: PR Sequence: 0 Length: 0 100K_RAT 496-500 Length: 5 Sequence: VQAMQ Sequence: 0 Length: 0 100K_RAT 501-508 Length: 8 Sequence: PAFASKIT Sequence: 0 Length: 0 100K_RAT 509-512 Length: 4 Sequence: GMLL Sequence: 0 Length: 0 100K_RAT 513-543 Length: 31 Sequence: ELSPAQLLLLLASEDSLRARVEEAMELIVAH Sequence: 0 Length: 0 100K_RAT 544-546 Length: 3 Sequence: GRE Sequence: 0 Length: 0 100K_RAT 547-549 Length: 3 Sequence: NGA Sequence: 0 Length: 0 100K_RAT 550-550 Length: 1 Sequence: D Sequence: 0 Length: 0 100K_RAT 551-555 Length: 5 Sequence: SILDL Sequence: 0 Length: 0 100K_RAT 556-557 Length: 2 Sequence: GL Sequence: 0 Length: 0 100K_RAT 558-559 Length: 2 Sequence: LD Sequence: 0 Length: 0 100K_RAT 560-568 Length: 9 Sequence: SSEKVQENR Sequence: 0 Length: 0 100K_RAT 569-572 Length: 4 Sequence: KRHG Sequence: 0 Length: 0 100K_RAT 573-574 Length: 2 Sequence: SS Sequence: 0 Length: 0 100K_RAT 575-575 Length: 1 Sequence: R Sequence: 0 Length: 0 100K_RAT 576-582 Length: 7 Sequence: SVVDMDL Sequence: 0 Length: 0 100K_RAT 583-590 Length: 8 Sequence: DDTDDGDD Sequence: 0 Length: 0 100K_RAT 591-592 Length: 2 Sequence: NA Sequence: 0 Length: 0 100K_RAT 593-597 Length: 5 Sequence: PLFYQ Sequence: 0 Length: 0 100K_RAT 598-602 Length: 5 Sequence: PGKRG Sequence: 0 Length: 0 100K_RAT 603-605 Length: 3 Sequence: FYT Sequence: 0 Length: 0 100K_RAT 606-607 Length: 2 Sequence: PR Sequence: 0 Length: 0 100K_RAT 608-609 Length: 2 Sequence: PG Sequence: 0 Length: 0 100K_RAT 610-612 Length: 3 Sequence: KNT Sequence: 0 Length: 0 100K_RAT 613-613 Length: 1 Sequence: E Sequence: 0 Length: 0 100K_RAT 614-616 Length: 3 Sequence: ARL Sequence: 0 Length: 0 100K_RAT 617-624 Length: 8 Sequence: NCFRNIGR Sequence: 0 Length: 0 100K_RAT 625-630 Length: 6 Sequence: ILGLCL Sequence: 0 Length: 0 100K_RAT 631-634 Length: 4 Sequence: LQNE Sequence: 0 Length: 0 100K_RAT 635-636 Length: 2 Sequence: LC Sequence: 0 Length: 0 100K_RAT 637-638 Length: 2 Sequence: PI Sequence: 0 Length: 0 100K_RAT 639-642 Length: 4 Sequence: TLNR Sequence: 0 Length: 0 100K_RAT 643-649 Length: 7 Sequence: HVIKVLL Sequence: 0 Length: 0 100K_RAT 650-651 Length: 2 Sequence: GR Sequence: 0 Length: 0 100K_RAT 652-653 Length: 2 Sequence: KV Sequence: 0 Length: 0 100K_RAT 654-655 Length: 2 Sequence: NW Sequence: 0 Length: 0 100K_RAT 656-656 Length: 1 Sequence: H Sequence: 0 Length: 0 100K_RAT 657-660 Length: 4 Sequence: DFAF Sequence: 0 Length: 0 100K_RAT 661-664 Length: 4 Sequence: FDPV Sequence: 0 Length: 0 100K_RAT 665-672 Length: 8 Sequence: MYESLRQL Sequence: 0 Length: 0 100K_RAT 673-675 Length: 3 Sequence: ILA Sequence: 0 Length: 0 100K_RAT 676-680 Length: 5 Sequence: SQSSD Sequence: 0 Length: 0 100K_RAT 681-699 Length: 19 Sequence: ADAVFSAMDLAFAVDLCKE Sequence: 0 Length: 0 100K_RAT 700-702 Length: 3 Sequence: EGG Sequence: 0 Length: 0 100K_RAT 703-704 Length: 2 Sequence: GQ Sequence: 0 Length: 0 100K_RAT 705-708 Length: 4 Sequence: VELI Sequence: 0 Length: 0 100K_RAT 709-712 Length: 4 Sequence: PNGV Sequence: 0 Length: 0 100K_RAT 713-713 Length: 1 Sequence: N Sequence: 0 Length: 0 100K_RAT 714-718 Length: 5 Sequence: IPVTP Sequence: 0 Length: 0 100K_RAT 719-719 Length: 1 Sequence: Q Sequence: 0 Length: 0 100K_RAT 720-724 Length: 5 Sequence: NVYEY Sequence: 0 Length: 0 100K_RAT 725-748 Length: 24 Sequence: VRKYAEHRMLVVAEQPLHAMRKGL Sequence: 0 Length: 0 100K_RAT 749-751 Length: 3 Sequence: LDV Sequence: 0 Length: 0 100K_RAT 752-756 Length: 5 Sequence: LPKNS Sequence: 0 Length: 0 100K_RAT 757-767 Length: 11 Sequence: LEDLTAEDFRL Sequence: 0 Length: 0 100K_RAT 768-768 Length: 1 Sequence: L Sequence: 0 Length: 0 100K_RAT 769-769 Length: 1 Sequence: V Sequence: 0 Length: 0 100K_RAT 770-770 Length: 1 Sequence: N Sequence: 0 Length: 0 100K_RAT 771-772 Length: 2 Sequence: GC Sequence: 0 Length: 0 100K_RAT 773-774 Length: 2 Sequence: GE Sequence: 0 Length: 0 100K_RAT 775-783 Length: 9 Sequence: VNVQMLISF Sequence: 0 Length: 0 100K_RAT 784-791 Length: 8 Sequence: TSFNDESG Sequence: 0 Length: 0 100K_RAT 792-801 Length: 10 Sequence: ENAEKLLQFK Sequence: 0 Length: 0 100K_RAT 802-804 Length: 3 Sequence: RWF Sequence: 0 Length: 0 100K_RAT 805-812 Length: 8 Sequence: WSIVERMS Sequence: 0 Length: 0 100K_RAT 813-817 Length: 5 Sequence: MTERQ Sequence: 0 Length: 0 100K_RAT 818-818 Length: 1 Sequence: D Sequence: 0 Length: 0 100K_RAT 819-822 Length: 4 Sequence: LVYF Sequence: 0 Length: 0 100K_RAT 823-824 Length: 2 Sequence: WT Sequence: 0 Length: 0 100K_RAT 825-832 Length: 8 Sequence: SSPSLPAS Sequence: 0 Length: 0 100K_RAT 833-833 Length: 1 Sequence: E Sequence: 0 Length: 0 100K_RAT 834-836 Length: 3 Sequence: EGF Sequence: 0 Length: 0 100K_RAT 837-839 Length: 3 Sequence: QPM Sequence: 0 Length: 0 100K_RAT 840-841 Length: 2 Sequence: PS Sequence: 0 Length: 0 100K_RAT 842-845 Length: 4 Sequence: ITIR Sequence: 0 Length: 0 100K_RAT 846-846 Length: 1 Sequence: P Sequence: 0 Length: 0 100K_RAT 847-850 Length: 4 Sequence: PDDQ Sequence: 0 Length: 0 100K_RAT 851-852 Length: 2 Sequence: HL Sequence: 0 Length: 0 100K_RAT 853-857 Length: 5 Sequence: PTANT Sequence: 0 Length: 0 100K_RAT 858-865 Length: 8 Sequence: CISRLYVP Sequence: 0 Length: 0 100K_RAT 866-868 Length: 3 Sequence: LYS Sequence: 0 Length: 0 100K_RAT 869-882 Length: 14 Sequence: SKQILKQKLLLAIK Sequence: 0 Length: 0 100K_RAT 883-887 Length: 5 Sequence: TKNFG Sequence: 0 Length: 0 100K_RAT 888-889 Length: 2 Sequence: FV Sequence: 0 Length: 0 #--------------------------------------- # # Residue totals: H:364 E:149 T:191 C:185 # percent: H: 41.7 E: 17.1 T: 21.9 C: 21.2 # #---------------------------------------