EMBOSS: Project Meeting (Fri 17th September 2004)
1. Minutes of the last meeting
Minutes of the meeting of 3rd September 2004 are
2. Software Development
2.1 Memory leaks
Jon fixed a leak in embAlignCalc. For some domainatrix
applications a "garbage" attribute is temporarily added to sequence
objects for cleanup. This will be reviewed to find a way to avoid he
Jon has revised 15 out of 25 applications to update contacts
and residue signatures, and CATH data parsing. Inputs are as files or
sequences, and unused functionality has been removed to simplify the
Jon reported a group is interested in adding a graphical
front-end to the signature library.
A group at the Novartis Institute in Vienna wants clean coordinates in
PDB format not CCF. Jon will work on modifications for them.
3.1 User survey
Peter will send a summary of the results to date to the
emboss-bug mailing list..
4. Documentation & Training
4.1 Domainatrix paper
Job reported corrections have been accepted.
5. User queries and answers
Gary's current list reviewed. Most new issues were already answered.
7. Date Of Next Meeting
Next meeting at 9.30 on October 1st, 2004,