EMBOSS: Project Meeting (Fri 1st April 2005)
1. Minutes of the last meeting
Minutes of the meeting of 28th February 2005 are
2. Software Development
2.1 database indexing
Alan has tested run times for dbxflat. EMBL was indexed in 9 hours.
2.2 Codon Usage Tables
Peter is reviewing codon usage table formats and the output
Tim has fixed selection of cutg files from Jemboss. It may be
necessary to look at other ways to identify them.
The under-used "resources" in emboss.defaults could be used to help
codon usage table selection. Peter will investigate.
Martin reported that Gabriele Weiler is visiting from the
German Cancer Research Centre (DKFZ) in Heidelberg to work on BioMOBY
derived from seqret to interconvert sequence formats and types.
Peter reported ISMB have accepted the poster abstract, and BOSC
have accepted the talk abstract.
<3.2 Open Bio
Alan reported Open Bio have new machines and will be able to
provide an FTP server for EMBOSS when RFCGR closes.
4. Documentation & Training
5. User queries and answers
Gary's current list reviewed. Most new issues were already answered.
7. Date Of Next Meeting
Next meeting at 9.30 on May 13, 2005,