VIENNA Applications
These programs are adapted from the VIENNA RNA package.
This is currently under development, and is available only from the CVS server. We hope to make a beta release in the near future, but there is much work to be done on sequence formats and testing.
Applications in the current vienna release
| Program name | Description |
|---|---|
| ovrnaalifold | RNA alignment folding |
| ovrnaalifoldpf | RNA alignment folding with partition |
| ovrnacofold | RNA cofolding |
| ovrnacofoldconc | RNA cofolding with concentrations |
| ovrnacofoldpf | RNA cofolding with partitioning |
| ovrnadistance | RNA distances |
| ovrnaduplex | RNA duplex calculation |
| ovrnaeval | RNA eval |
| ovrnaevalpair | RNA eval with cofold |
| ovrnafold | Calculate secondary structures of RNAs |
| ovrnafoldpf | Secondary structures of RNAs with partition |
| ovrnaheat | RNA melting |
| ovrnainverse | RNA sequences matching a structure |
| ovrnalfold | Calculate locally stable secondary structures of RNAs |
| ovrnaplot | Plot vrnafold output |
| ovrnasubopt | Calculate RNA suboptimals |