| Name | |
|---|---|
| PATSEQ_UNKNOWN | type not defined |
| PATSEQ_BMH | Boyer, Moore, Horspool |
| PATSEQ_BYP | Baeza-Yates, perleberg |
| PATSEQ_SO | Shift-OR |
| PATSEQ_BYGC | Baeza-Yates, Gonnet classes |
| PATSEQ_PROSITE | Prosite pattern as regular expression |
| PATSEQ_TUB | Tarhito, Ukkonen, Bleasby |
| PATSEQ_OTHER | Brute force processing |
| PATSEQ_MAX | Beyond last defined value |
| Name | Type | Description |
|---|---|---|
| start | ajuint* | Match start positions |
| len | ajuint* | Match lengths |
| number | ajuint | Number of matches |
| Padding | char[4] | Padding to alignment boundary |
| Name | Type | Description |
|---|---|---|
| cod | AjPStr | Restriction Enzyme name |
| pat | AjPStr | Recognition site |
| bin | AjPStr | Binary converted site |
| len | ajuint | Pattern length |
| blunt | AjBool | Blunt true, sticky false |
| cut1 | ajint | First 3' cut |
| cut2 | ajint | First 5' cut |
| cut3 | ajint | Second 3' cut |
| cut4 | ajint | Second 5' cut |
| org | AjPStr | Organism |
| iso | AjPStr | Isoschizomers |
| meth | AjPStr | Methylation |
| sou | AjPStr | Source |
| sup | AjPStr | Suppliers |
| ncuts | ajuint | Number of cuts |
| Padding | char[4] | Padding to alignment boundary |