embpatlist.c

Function embPatlistSeqSearch

Prototype

void embPatlistSeqSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistSeq plist,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
AjPPatlistSeq	plist	Modify	List of patterns to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatlistSeqSearchAll

Prototype

void embPatlistSeqSearchAll (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistSeq plist,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
AjPPatlistSeq	plist	Modify	List of patterns to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatlistRegexSearch

Prototype

void embPatlistRegexSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistRegex plist,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
AjPPatlistRegex	plist	Modify	List of patterns to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatlistRegexSearchAll

Prototype

void embPatlistRegexSearchAll (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistRegex plist,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
AjPPatlistRegex	plist	Modify	List of patterns to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatternRegexSearch

Prototype

void embPatternRegexSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternRegex pat,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
const AjPPatternRegex	pat	Input	Pattern to search with
AjBool	reverse	Input	Sequence has been reversed
void		RETURN

From EMBOSS 4.0.0

Function embPatternRegexSearchAll

Prototype

void embPatternRegexSearchAll (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternRegex pat,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
const AjPPatternRegex	pat	Input	Pattern to search with
AjBool	reverse	Input	Sequence has been reversed
void		RETURN

From EMBOSS 4.0.0

Function embPatternSeqSearch

Prototype

void embPatternSeqSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternSeq pat,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
const AjPPatternSeq	pat	Input	Pattern to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatternSeqSearchAll

Prototype

void embPatternSeqSearchAll (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternSeq pat,
      AjBool reverse
);

Type	Name	Read/Write	Description
AjPFeattable	ftable	Output	Table of found features
const AjPSeq	seq	Input	Sequence to search
const AjPPatternSeq	pat	Input	Pattern to search with
AjBool	reverse	Input	Search reverse sequence as well
void		RETURN

From EMBOSS 4.0.0

Function embPatternSeqCompile

Prototype

AjBool embPatternSeqCompile (
      AjPPatternSeq pat
);

Type	Name	Read/Write	Description
AjPPatternSeq	pat	Output	Pattern for compiling
AjBool		RETURN	True, if compilation succeeded

From EMBOSS 4.0.0

Function embPatlistExit

Prototype

void embPatlistExit (
      void
);

Type	Name	Read/Write	Description
void		RETURN

From EMBOSS 6.1.0