ajjava.c

Function Ajax.seqType

Return length, weight and type information for a sequence

Prototype

jboolean Ajax.seqType (
      JNIEnv* env,
      jobject obj,
      jstring usa
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jobject obj Input java object

jstring usa Input usa

jboolean RETURN true if the sequence exists

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`usa`	Input	usa
`jboolean`		RETURN	true if the sequence exists

From EMBOSS 2.3.0

Function Ajax.seqsetType

Return length, weight and type information for a seqset

Prototype

jboolean Ajax.seqsetType (
      JNIEnv* env,
      jobject obj,
      jstring usa
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jobject obj Input java object

jstring usa Input usa

jboolean RETURN true if the sequences exist

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`usa`	Input	usa
`jboolean`		RETURN	true if the sequences exist

From EMBOSS 2.3.0

Function Ajax.userInfo

Return the uid, gid and home directory of a user

Prototype

jboolean Ajax.userInfo (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jstring key
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jobject obj Input java object

jstring door Input username

jstring key Input password

jboolean RETURN true if the username/password are valid

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jstring`	`key`	Input	password
`jboolean`		RETURN	true if the username/password are valid

From EMBOSS 2.3.0

Function Ajax.setuid

Set the uid of the current process

Prototype

jint Ajax.setuid (
      JNIEnv* env,
      jclass j,
      jint uid
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint uid Input uid

jint RETURN 0 on success, -1 if failure

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`	`uid`	Input	uid
`jint`		RETURN	0 on success, -1 if failure

From EMBOSS 2.3.0

Function Ajax.seteuid

Set the effective uid of the current process

Prototype

jint Ajax.seteuid (
      JNIEnv* env,
      jclass j,
      jint uid
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint uid Input uid

jint RETURN 0 on success, -1 if failure

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`	`uid`	Input	uid
`jint`		RETURN	0 on success, -1 if failure

From EMBOSS 2.3.0

Function Ajax.setgid

Set the gid of the current process

Prototype

jint Ajax.setgid (
      JNIEnv* env,
      jclass j,
      jint gid
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint gid Input gid

jint RETURN 0 on success, -1 if failure

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`	`gid`	Input	gid
`jint`		RETURN	0 on success, -1 if failure

From EMBOSS 2.3.0

Function Ajax.setegid

Set the effective gid of the current process

Prototype

jint Ajax.setegid (
      JNIEnv* env,
      jclass j,
      jint gid
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint gid Input gid

jint RETURN 0 on success, -1 if failure

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`	`gid`	Input	gid
`jint`		RETURN	0 on success, -1 if failure

From EMBOSS 2.3.0

Function Ajax.getuid

Return the uid of the current process

Prototype

jint Ajax.getuid (
      JNIEnv* env,
      jclass j
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint RETURN uid

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`		RETURN	uid

From EMBOSS 2.3.0

Function Ajax.getgid

Return the gid of the current process

Prototype

jint Ajax.getgid (
      JNIEnv* env,
      jclass j
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint RETURN gid

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`		RETURN	gid

From EMBOSS 2.3.0

Function Ajax.geteuid

Return the effective uid of the current process

Prototype

jint Ajax.geteuid (
      JNIEnv* env,
      jclass j
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint RETURN uid

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`		RETURN	uid

From EMBOSS 2.3.0

Function Ajax.getegid

Return the effective gid of the current process

Prototype

jint Ajax.getegid (
      JNIEnv* env,
      jclass j
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jclass j Input java class

jint RETURN gid

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jclass`	`j`	Input	java class
`jint`		RETURN	gid

From EMBOSS 2.3.0

Function Ajax.fork

Fork off new process with given uid & gid, chdir and execute command return stdout and stderr of the child process

Prototype

jboolean Ajax.fork (
      JNIEnv* env,
      jobject obj,
      jstring commandline,
      jstring environment,
      jstring directory,
      jint uid,
      jint gid
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jobject obj Input java object

jstring commandline Input command to execute

jstring environment Input shell environment

jstring directory Input chdir here before execution

jint uid Input uid for setuid

jint gid Input gid for setgid

jboolean RETURN true if success

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`commandline`	Input	command to execute
`jstring`	`environment`	Input	shell environment
`jstring`	`directory`	Input	chdir here before execution
`jint`	`uid`	Input	uid for setuid
`jint`	`gid`	Input	gid for setgid
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.userAuth

Verify user and retrieve home directory Loads outStd,errStd within java. Sets 'home' in Java

Prototype

jboolean Ajax.userAuth (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment
);

Type Name Read/Write Description

JNIEnv* env Modify java environment

jobject obj Input java object

jstring door Input username

jbyteArray key Input password

jstring environment Input environment

jboolean RETURN true if success

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.forkBatch

Run an EMBOSS program detached Loads outStd,errStd within java.

Prototype

jboolean Ajax.forkBatch (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring cline,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`cline`	Input	command line
`jstring`	`direct`	Input	directory to create
`jboolean`		RETURN	true if success

From EMBOSS 2.4.0

Function Ajax.forkEmboss

Run an EMBOSS program Loads outStd,errStd within java.

Prototype

jboolean Ajax.forkEmboss (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring cline,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`cline`	Input	command line
`jstring`	`direct`	Input	directory to create
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.makeDir

Create a directory Loads outStd,errStd within java.

Prototype

jboolean Ajax.makeDir (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`direct`	Input	directory to create
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.delFile

Delete a file Loads outStd,errStd within java.

Prototype

jboolean Ajax.delFile (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	file to delete
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.renameFile

Rename a file Loads outStd,errStd within java.

Prototype

jboolean Ajax.renameFile (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename,
      jstring filename2
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	old filename
`jstring`	`filename2`	Input	new filename
`jboolean`		RETURN	true if success

From EMBOSS 2.5.0

Function Ajax.delDir

Recursively delete a directory Loads outStd,errStd within java.

Prototype

jboolean Ajax.delDir (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`direct`	Input	directory to delete
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.listFiles

Lists regular files Loads outStd,errStd within java. outStd contains the list

Prototype

jboolean Ajax.listFiles (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`direct`	Input	directory to scan
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.listDirs

Lists files of type 'directory' Loads outStd,errStd within java. outStd contains the list

Prototype

jboolean Ajax.listDirs (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring direct
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`direct`	Input	directory to scan
`jboolean`		RETURN	true if success

From EMBOSS 2.3.0

Function Ajax.getFile

Get a user file Loads outStd,errStd within java Sets size (of file),fileok (success) & prnt ([non]printable] variables in java

Prototype

jbyteArray Ajax.getFile (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	filename to get
`jbyteArray`		RETURN	contents of file

From EMBOSS 2.3.0

Function Ajax.putFile

Write a user file Loads outStd,errStd within java

Prototype

jboolean Ajax.putFile (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename,
      jbyteArray arr
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	filename to create
`jbyteArray`	`arr`	Input	contents for the file
`jboolean`		RETURN	true if the file was written

From EMBOSS 2.3.0

Function Ajax.seqAttrib

Return sequence attributes Loads outStd,errStd within java.

Prototype

jboolean Ajax.seqAttrib (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	file to delete
`jboolean`		RETURN	true if success

From EMBOSS 2.5.0

Function Ajax.seqsetAttrib

Return seqset attributes Loads outStd,errStd within java.

Prototype

jboolean Ajax.seqsetAttrib (
      JNIEnv* env,
      jobject obj,
      jstring door,
      jbyteArray key,
      jstring environment,
      jstring filename
);

Type	Name	Read/Write	Description
`JNIEnv*`	`env`	Modify	java environment
`jobject`	`obj`	Input	java object
`jstring`	`door`	Input	username
`jbyteArray`	`key`	Input	password
`jstring`	`environment`	Input	environment
`jstring`	`filename`	Input	usa
`jboolean`		RETURN	true if success

From EMBOSS 2.5.0