embmat.c

Function embMatMatchDel

Prototype

void embMatMatchDel (
      EmbPMatMatch* s
);

Type	Name	Read/Write	Description
EmbPMatMatch*	s	Output	Structure to delete
void		RETURN

From EMBOSS 1.0.0

Function embMatPrintsInit

Prototype

void embMatPrintsInit (
      AjPFile* fp
);

Type	Name	Read/Write	Description
AjPFile*	fp	Output	file pointer
void		RETURN

From EMBOSS 1.0.0

Function embMatProtReadInt

Prototype

EmbPMatPrints embMatProtReadInt (
      AjPFile fp
);

Type	Name	Read/Write	Description
AjPFile	fp	Modify	data file pointer
EmbPMatPrints		RETURN	matrix structure

From EMBOSS 1.0.0

Function embMatProtDelInt

Prototype

void embMatProtDelInt (
      EmbPMatPrints* s
);

Type	Name	Read/Write	Description
EmbPMatPrints*	s	Delete	matrix structure
void		RETURN

From EMBOSS 1.0.0

Function embMatProtScanInt

Prototype

ajuint embMatProtScanInt (
      const AjPStr s,
      const AjPStr n,
      const EmbPMatPrints m,
      AjPList* l,
      AjBool* all,
      AjBool* ordered,
      AjBool overlap
);

Type	Name	Read/Write	Description
const AjPStr	s	Input	Sequence
const AjPStr	n	Input	name of sequence
const EmbPMatPrints	m	Input	Fingerprint matrix
AjPList*	l	Output	List to push hits to
AjBool*	all	Output	Set if all elements match
AjBool*	ordered	Output	Set if all elements are in order
AjBool	overlap	Input	True if overlaps are allowed
ajuint		RETURN	number of hits

From EMBOSS 1.0.0