Programs

EMBOSS source code

ftp://emboss.open-bio.org/pub/EMBOSS

EMBOSS Documentation

http://emboss.sf.net/

BLAST tools

Tools for generating BLAST format databases are contained in the NCBI toolkit which can be obtained from NCBI at:

http://www.ncbi.nlm.nih.gov/

SRS software

The SRS software can be obtained from Lion Bioscience. http://www.lionbioscience.com/solutions/srs This is a commercial package but at the time of writing is available free of charge to academic institutions.

wget

Various useful utilities including the wget program are available from the Free Software Foundation. http://www.gnu.org