######################################## # Program: garnier # Rundate: Fri Nov 08 15:46:16 2002 # Report_format: motif # Report_file: report.motif ######################################## #======================================= # # Sequence: 100K_RAT from: 1 to: 889 # HitCount: 206 # # DCH = 0, DCS = 0 # # Please cite: # Garnier, Osguthorpe and Robson (1978) J. Mol. Biol. 120:97-120 # # #======================================= (1) Score 0.000 length 6 at residues 1->6 Sequence: MMSARG | | 1 6 helix: H (2) Score 0.000 length 1 at residues 7->7 Sequence: D | 7 turns: T (3) Score 0.000 length 10 at residues 8->17 Sequence: FLNYALSLMR | | 8 17 helix: H (4) Score 0.000 length 3 at residues 18->20 Sequence: SHN | | 18 20 coil: C (5) Score 0.000 length 5 at residues 21->25 Sequence: DEHSD | | 21 25 turns: T (6) Score 0.000 length 3 at residues 26->28 Sequence: VLP | | 26 28 sheet: E (7) Score 0.000 length 10 at residues 29->38 Sequence: VLDVCSLKHV | | 29 38 helix: H (8) Score 0.000 length 2 at residues 39->40 Sequence: AY || 3940 sheet: E (9) Score 0.000 length 10 at residues 41->50 Sequence: VFQALIYWIK | | 41 50 helix: H (10) Score 0.000 length 3 at residues 51->53 Sequence: AMN | | 51 53 coil: C (11) Score 0.000 length 2 at residues 54->55 Sequence: QQ || 5455 turns: T (12) Score 0.000 length 7 at residues 56->62 Sequence: TTLDTPQ | | 56 62 coil: C (13) Score 0.000 length 15 at residues 63->77 Sequence: LERKRTRELLELGID | | 63 77 helix: H (14) Score 0.000 length 1 at residues 78->78 Sequence: N | 78 coil: C (15) Score 0.000 length 7 at residues 79->85 Sequence: EDSEHEN | | 79 85 helix: H (16) Score 0.000 length 3 at residues 86->88 Sequence: DDD | | 86 88 turns: T (17) Score 0.000 length 1 at residues 89->89 Sequence: T | 89 coil: C (18) Score 0.000 length 2 at residues 90->91 Sequence: SQ || 9091 helix: H (19) Score 0.000 length 2 at residues 92->93 Sequence: SA || 9293 sheet: E (20) Score 0.000 length 3 at residues 94->96 Sequence: TLN | | 94 96 coil: C (21) Score 0.000 length 3 at residues 97->99 Sequence: DKD | | 97 99 turns: T (22) Score 0.000 length 1 at residues 100->100 Sequence: D | 100 coil: C (23) Score 0.000 length 1 at residues 101->101 Sequence: E | 101 helix: H (24) Score 0.000 length 2 at residues 102->103 Sequence: SL || 102103 coil: C (25) Score 0.000 length 4 at residues 104->107 Sequence: PAET | | 104 107 helix: H (26) Score 0.000 length 2 at residues 108->109 Sequence: GQ || 108109 turns: T (27) Score 0.000 length 3 at residues 110->112 Sequence: NHP | | 110 112 coil: C (28) Score 0.000 length 1 at residues 113->113 Sequence: F | 113 turns: T (29) Score 0.000 length 1 at residues 114->114 Sequence: F | 114 sheet: E (30) Score 0.000 length 7 at residues 115->121 Sequence: RRSDSMT | | 115 121 turns: T (31) Score 0.000 length 2 at residues 122->123 Sequence: FL || 122123 sheet: E (32) Score 0.000 length 2 at residues 124->125 Sequence: GC || 124125 turns: T (33) Score 0.000 length 5 at residues 126->130 Sequence: IPPNP | | 126 130 coil: C (34) Score 0.000 length 1 at residues 131->131 Sequence: F | 131 turns: T (35) Score 0.000 length 2 at residues 132->133 Sequence: EV || 132133 sheet: E (36) Score 0.000 length 11 at residues 134->144 Sequence: PLAEAIPLADQ | | 134 144 helix: H (37) Score 0.000 length 1 at residues 145->145 Sequence: P | 145 coil: C (38) Score 0.000 length 1 at residues 146->146 Sequence: H | 146 turns: T (39) Score 0.000 length 6 at residues 147->152 Sequence: LLQPNA | | 147 152 coil: C (40) Score 0.000 length 2 at residues 153->154 Sequence: RK || 153154 helix: H (41) Score 0.000 length 2 at residues 155->156 Sequence: ED || 155156 sheet: E (42) Score 0.000 length 2 at residues 157->158 Sequence: LF || 157158 turns: T (43) Score 0.000 length 3 at residues 159->161 Sequence: GRP | | 159 161 coil: C (44) Score 0.000 length 3 at residues 162->164 Sequence: SQG | | 162 164 turns: T (45) Score 0.000 length 1 at residues 165->165 Sequence: L | 165 coil: C (46) Score 0.000 length 2 at residues 166->167 Sequence: YS || 166167 sheet: E (47) Score 0.000 length 6 at residues 168->173 Sequence: SSAGSG | | 168 173 turns: T (48) Score 0.000 length 1 at residues 174->174 Sequence: K | 174 coil: C (49) Score 0.000 length 5 at residues 175->179 Sequence: CLVEV | | 175 179 sheet: E (50) Score 0.000 length 30 at residues 180->209 Sequence: TMDRNCLEVLPTKMSYAANLKNVMNMQNRQ | | 180 209 helix: H (51) Score 0.000 length 4 at residues 210->213 Sequence: KKAG | | 210 213 coil: C (52) Score 0.000 length 11 at residues 214->224 Sequence: EDQSMLAEEAD | | 214 224 helix: H (53) Score 0.000 length 1 at residues 225->225 Sequence: S | 225 turns: T (54) Score 0.000 length 6 at residues 226->231 Sequence: SKPGPS | | 226 231 coil: C (55) Score 0.000 length 17 at residues 232->248 Sequence: AHDVAAQLKSSLLAEIG | | 232 248 helix: H (56) Score 0.000 length 3 at residues 249->251 Sequence: LTE | | 249 251 coil: C (57) Score 0.000 length 2 at residues 252->253 Sequence: SE || 252253 turns: T (58) Score 0.000 length 2 at residues 254->255 Sequence: GP || 254255 coil: C (59) Score 0.000 length 4 at residues 256->259 Sequence: PLTS | | 256 259 turns: T (60) Score 0.000 length 2 at residues 260->261 Sequence: FR || 260261 sheet: E (61) Score 0.000 length 5 at residues 262->266 Sequence: PQCSF | | 262 266 turns: T (62) Score 0.000 length 3 at residues 267->269 Sequence: MGM | | 267 269 sheet: E (63) Score 0.000 length 8 at residues 270->277 Sequence: VISHDMLL | | 270 277 helix: H (64) Score 0.000 length 2 at residues 278->279 Sequence: GR || 278279 turns: T (65) Score 0.000 length 2 at residues 280->281 Sequence: WR || 280281 helix: H (66) Score 0.000 length 5 at residues 282->286 Sequence: LSLEL | | 282 286 coil: C (67) Score 0.000 length 7 at residues 287->293 Sequence: FGRVFME | | 287 293 helix: H (68) Score 0.000 length 6 at residues 294->299 Sequence: DVGAEP | | 294 299 coil: C (69) Score 0.000 length 1 at residues 300->300 Sequence: G | 300 turns: T (70) Score 0.000 length 1 at residues 301->301 Sequence: S | 301 coil: C (71) Score 0.000 length 3 at residues 302->304 Sequence: ILT | | 302 304 sheet: E (72) Score 0.000 length 1 at residues 305->305 Sequence: E | 305 helix: H (73) Score 0.000 length 2 at residues 306->307 Sequence: LG || 306307 coil: C (74) Score 0.000 length 19 at residues 308->326 Sequence: GFEVKESKFRREMEKLRNQ | | 308 326 helix: H (75) Score 0.000 length 2 at residues 327->328 Sequence: QS || 327328 coil: C (76) Score 0.000 length 1 at residues 329->329 Sequence: R | 329 turns: T (77) Score 0.000 length 2 at residues 330->331 Sequence: DL || 330331 coil: C (78) Score 0.000 length 3 at residues 332->334 Sequence: SLE | | 332 334 sheet: E (79) Score 0.000 length 9 at residues 335->343 Sequence: VDRDRDLLI | | 335 343 helix: H (80) Score 0.000 length 5 at residues 344->348 Sequence: QQTMR | | 344 348 sheet: E (81) Score 0.000 length 1 at residues 349->349 Sequence: Q | 349 turns: T (82) Score 0.000 length 1 at residues 350->350 Sequence: L | 350 coil: C (83) Score 0.000 length 9 at residues 351->359 Sequence: NNHFGRRCA | | 351 359 turns: T (84) Score 0.000 length 2 at residues 360->361 Sequence: TT || 360361 coil: C (85) Score 0.000 length 8 at residues 362->369 Sequence: PMAVHRVK | | 362 369 helix: H (86) Score 0.000 length 4 at residues 370->373 Sequence: VTFK | | 370 373 sheet: E (87) Score 0.000 length 3 at residues 374->376 Sequence: DEP | | 374 376 coil: C (88) Score 0.000 length 2 at residues 377->378 Sequence: GE || 377378 turns: T (89) Score 0.000 length 4 at residues 379->382 Sequence: GSGV | | 379 382 coil: C (90) Score 0.000 length 6 at residues 383->388 Sequence: ARSFYT | | 383 388 sheet: E (91) Score 0.000 length 7 at residues 389->395 Sequence: AIAQAFL | | 389 395 helix: H (92) Score 0.000 length 1 at residues 396->396 Sequence: S | 396 coil: C (93) Score 0.000 length 3 at residues 397->399 Sequence: NEK | | 397 399 turns: T (94) Score 0.000 length 1 at residues 400->400 Sequence: L | 400 coil: C (95) Score 0.000 length 2 at residues 401->402 Sequence: PN || 401402 turns: T (96) Score 0.000 length 1 at residues 403->403 Sequence: L | 403 helix: H (97) Score 0.000 length 1 at residues 404->404 Sequence: D | 404 sheet: E (98) Score 0.000 length 1 at residues 405->405 Sequence: C | 405 helix: H (99) Score 0.000 length 2 at residues 406->407 Sequence: IQ || 406407 sheet: E (100) Score 0.000 length 5 at residues 408->412 Sequence: NANKG | | 408 412 turns: T (101) Score 0.000 length 2 at residues 413->414 Sequence: TH || 413414 coil: C (102) Score 0.000 length 6 at residues 415->420 Sequence: TSLMQR | | 415 420 sheet: E (103) Score 0.000 length 8 at residues 421->428 Sequence: LRNRGERD | | 421 428 coil: C (104) Score 0.000 length 10 at residues 429->438 Sequence: REREREREMR | | 429 438 helix: H (105) Score 0.000 length 2 at residues 439->440 Sequence: RS || 439440 turns: T (106) Score 0.000 length 5 at residues 441->445 Sequence: SGLRA | | 441 445 coil: C (107) Score 0.000 length 1 at residues 446->446 Sequence: G | 446 turns: T (108) Score 0.000 length 1 at residues 447->447 Sequence: S | 447 coil: C (109) Score 0.000 length 15 at residues 448->462 Sequence: RRDRDRDFRRQLSID | | 448 462 turns: T (110) Score 0.000 length 3 at residues 463->465 Sequence: TRP | | 463 465 coil: C (111) Score 0.000 length 1 at residues 466->466 Sequence: F | 466 turns: T (112) Score 0.000 length 2 at residues 467->468 Sequence: RP || 467468 coil: C (113) Score 0.000 length 1 at residues 469->469 Sequence: A | 469 turns: T (114) Score 0.000 length 1 at residues 470->470 Sequence: S | 470 coil: C (115) Score 0.000 length 2 at residues 471->472 Sequence: EG || 471472 turns: T (116) Score 0.000 length 1 at residues 473->473 Sequence: N | 473 coil: C (117) Score 0.000 length 3 at residues 474->476 Sequence: PSD | | 474 476 turns: T (118) Score 0.000 length 5 at residues 477->481 Sequence: DPDPL | | 477 481 coil: C (119) Score 0.000 length 6 at residues 482->487 Sequence: PAHRQA | | 482 487 helix: H (120) Score 0.000 length 1 at residues 488->488 Sequence: L | 488 coil: C (121) Score 0.000 length 3 at residues 489->491 Sequence: GER | | 489 491 turns: T (122) Score 0.000 length 2 at residues 492->493 Sequence: LY || 492493 coil: C (123) Score 0.000 length 2 at residues 494->495 Sequence: PR || 494495 turns: T (124) Score 0.000 length 5 at residues 496->500 Sequence: VQAMQ | | 496 500 sheet: E (125) Score 0.000 length 8 at residues 501->508 Sequence: PAFASKIT | | 501 508 helix: H (126) Score 0.000 length 4 at residues 509->512 Sequence: GMLL | | 509 512 sheet: E (127) Score 0.000 length 31 at residues 513->543 Sequence: ELSPAQLLLLLASEDSLRARVEEAMELIVAH | | 513 543 helix: H (128) Score 0.000 length 3 at residues 544->546 Sequence: GRE | | 544 546 coil: C (129) Score 0.000 length 3 at residues 547->549 Sequence: NGA | | 547 549 turns: T (130) Score 0.000 length 1 at residues 550->550 Sequence: D | 550 coil: C (131) Score 0.000 length 5 at residues 551->555 Sequence: SILDL | | 551 555 sheet: E (132) Score 0.000 length 2 at residues 556->557 Sequence: GL || 556557 helix: H (133) Score 0.000 length 2 at residues 558->559 Sequence: LD || 558559 coil: C (134) Score 0.000 length 9 at residues 560->568 Sequence: SSEKVQENR | | 560 568 helix: H (135) Score 0.000 length 4 at residues 569->572 Sequence: KRHG | | 569 572 turns: T (136) Score 0.000 length 2 at residues 573->574 Sequence: SS || 573574 coil: C (137) Score 0.000 length 1 at residues 575->575 Sequence: R | 575 turns: T (138) Score 0.000 length 7 at residues 576->582 Sequence: SVVDMDL | | 576 582 sheet: E (139) Score 0.000 length 8 at residues 583->590 Sequence: DDTDDGDD | | 583 590 turns: T (140) Score 0.000 length 2 at residues 591->592 Sequence: NA || 591592 coil: C (141) Score 0.000 length 5 at residues 593->597 Sequence: PLFYQ | | 593 597 sheet: E (142) Score 0.000 length 5 at residues 598->602 Sequence: PGKRG | | 598 602 turns: T (143) Score 0.000 length 3 at residues 603->605 Sequence: FYT | | 603 605 sheet: E (144) Score 0.000 length 2 at residues 606->607 Sequence: PR || 606607 coil: C (145) Score 0.000 length 2 at residues 608->609 Sequence: PG || 608609 turns: T (146) Score 0.000 length 3 at residues 610->612 Sequence: KNT | | 610 612 coil: C (147) Score 0.000 length 1 at residues 613->613 Sequence: E | 613 sheet: E (148) Score 0.000 length 3 at residues 614->616 Sequence: ARL | | 614 616 helix: H (149) Score 0.000 length 8 at residues 617->624 Sequence: NCFRNIGR | | 617 624 turns: T (150) Score 0.000 length 6 at residues 625->630 Sequence: ILGLCL | | 625 630 sheet: E (151) Score 0.000 length 4 at residues 631->634 Sequence: LQNE | | 631 634 turns: T (152) Score 0.000 length 2 at residues 635->636 Sequence: LC || 635636 sheet: E (153) Score 0.000 length 2 at residues 637->638 Sequence: PI || 637638 turns: T (154) Score 0.000 length 4 at residues 639->642 Sequence: TLNR | | 639 642 helix: H (155) Score 0.000 length 7 at residues 643->649 Sequence: HVIKVLL | | 643 649 sheet: E (156) Score 0.000 length 2 at residues 650->651 Sequence: GR || 650651 turns: T (157) Score 0.000 length 2 at residues 652->653 Sequence: KV || 652653 coil: C (158) Score 0.000 length 2 at residues 654->655 Sequence: NW || 654655 turns: T (159) Score 0.000 length 1 at residues 656->656 Sequence: H | 656 coil: C (160) Score 0.000 length 4 at residues 657->660 Sequence: DFAF | | 657 660 turns: T (161) Score 0.000 length 4 at residues 661->664 Sequence: FDPV | | 661 664 coil: C (162) Score 0.000 length 8 at residues 665->672 Sequence: MYESLRQL | | 665 672 helix: H (163) Score 0.000 length 3 at residues 673->675 Sequence: ILA | | 673 675 sheet: E (164) Score 0.000 length 5 at residues 676->680 Sequence: SQSSD | | 676 680 coil: C (165) Score 0.000 length 19 at residues 681->699 Sequence: ADAVFSAMDLAFAVDLCKE | | 681 699 helix: H (166) Score 0.000 length 3 at residues 700->702 Sequence: EGG | | 700 702 turns: T (167) Score 0.000 length 2 at residues 703->704 Sequence: GQ || 703704 coil: C (168) Score 0.000 length 4 at residues 705->708 Sequence: VELI | | 705 708 sheet: E (169) Score 0.000 length 4 at residues 709->712 Sequence: PNGV | | 709 712 turns: T (170) Score 0.000 length 1 at residues 713->713 Sequence: N | 713 coil: C (171) Score 0.000 length 5 at residues 714->718 Sequence: IPVTP | | 714 718 sheet: E (172) Score 0.000 length 1 at residues 719->719 Sequence: Q | 719 turns: T (173) Score 0.000 length 5 at residues 720->724 Sequence: NVYEY | | 720 724 sheet: E (174) Score 0.000 length 24 at residues 725->748 Sequence: VRKYAEHRMLVVAEQPLHAMRKGL | | 725 748 helix: H (175) Score 0.000 length 3 at residues 749->751 Sequence: LDV | | 749 751 sheet: E (176) Score 0.000 length 5 at residues 752->756 Sequence: LPKNS | | 752 756 coil: C (177) Score 0.000 length 11 at residues 757->767 Sequence: LEDLTAEDFRL | | 757 767 helix: H (178) Score 0.000 length 1 at residues 768->768 Sequence: L | 768 sheet: E (179) Score 0.000 length 1 at residues 769->769 Sequence: V | 769 turns: T (180) Score 0.000 length 1 at residues 770->770 Sequence: N | 770 coil: C (181) Score 0.000 length 2 at residues 771->772 Sequence: GC || 771772 turns: T (182) Score 0.000 length 2 at residues 773->774 Sequence: GE || 773774 coil: C (183) Score 0.000 length 9 at residues 775->783 Sequence: VNVQMLISF | | 775 783 sheet: E (184) Score 0.000 length 8 at residues 784->791 Sequence: TSFNDESG | | 784 791 coil: C (185) Score 0.000 length 10 at residues 792->801 Sequence: ENAEKLLQFK | | 792 801 helix: H (186) Score 0.000 length 3 at residues 802->804 Sequence: RWF | | 802 804 turns: T (187) Score 0.000 length 8 at residues 805->812 Sequence: WSIVERMS | | 805 812 coil: C (188) Score 0.000 length 5 at residues 813->817 Sequence: MTERQ | | 813 817 helix: H (189) Score 0.000 length 1 at residues 818->818 Sequence: D | 818 turns: T (190) Score 0.000 length 4 at residues 819->822 Sequence: LVYF | | 819 822 sheet: E (191) Score 0.000 length 2 at residues 823->824 Sequence: WT || 823824 turns: T (192) Score 0.000 length 8 at residues 825->832 Sequence: SSPSLPAS | | 825 832 coil: C (193) Score 0.000 length 1 at residues 833->833 Sequence: E | 833 helix: H (194) Score 0.000 length 3 at residues 834->836 Sequence: EGF | | 834 836 turns: T (195) Score 0.000 length 3 at residues 837->839 Sequence: QPM | | 837 839 coil: C (196) Score 0.000 length 2 at residues 840->841 Sequence: PS || 840841 turns: T (197) Score 0.000 length 4 at residues 842->845 Sequence: ITIR | | 842 845 sheet: E (198) Score 0.000 length 1 at residues 846->846 Sequence: P | 846 coil: C (199) Score 0.000 length 4 at residues 847->850 Sequence: PDDQ | | 847 850 turns: T (200) Score 0.000 length 2 at residues 851->852 Sequence: HL || 851852 coil: C (201) Score 0.000 length 5 at residues 853->857 Sequence: PTANT | | 853 857 turns: T (202) Score 0.000 length 8 at residues 858->865 Sequence: CISRLYVP | | 858 865 sheet: E (203) Score 0.000 length 3 at residues 866->868 Sequence: LYS | | 866 868 turns: T (204) Score 0.000 length 14 at residues 869->882 Sequence: SKQILKQKLLLAIK | | 869 882 helix: H (205) Score 0.000 length 5 at residues 883->887 Sequence: TKNFG | | 883 887 turns: T (206) Score 0.000 length 2 at residues 888->889 Sequence: FV || 888889 sheet: E #--------------------------------------- # # Residue totals: H:364 E:149 T:191 C:185 # percent: H: 41.7 E: 17.1 T: 21.9 C: 21.2 # #---------------------------------------