EMBOSS: Project Meeting (Fri 31st October 2003)

Attendees

HGMP: Alan Bleasby, Jon Ison, Gary Williams, Damian Counsell, Lisa Mullan, Claude Beazley
Lion: Thomas Laurent
Sanger:
Cambridge Uni:
EBI: Peter Rice
Visitors:

Apologies: Rodrigo Lopez

Minutes of the last meeting

Minutes of the meeting of 17th October 2003 are here

1. Action points

1.1 From this meetings:

1.2 From previous meetings:
MEME documentation is required (action AJB, 2003-02-21)
Provide documentation for propehcy (AJB, 2003-03-21)
Investigate bug tracking system (PMR, 2003-09-19)
Investigate WIKI FAQ list (DC, 2003-09-19)
Convert graphics to grout (PMR, 2003-09-19)
Read and comment on EMBOSS Quick Guide for Gary (action all, 2003-10-17)

1.3 No longer required:

2. Software Development

2.1 EMBOSS 2.8.0 release

Two bugs have been reported in "supermatcher". Peter is investigating. These should be fixed before the release.

Alan has modified the Smith-Waterman alignment code to include missing residues at the start of some alignments.

Peter is running QA tests. No other show-stopper bugs are known. Memory leaks have yet to be checked.

2.2 EMBOSS Ontologies

Peter has a student Marie-Laetitia Denayer visiting for 6 weeks from the Belgian EMBnet node. Her project is to build Ontologies for ACD files, so that we can define our understanding of how EMBOSS ACD types and EMBOSS applications interact.

3. Documentation & Training

4. Administration

5. AOB

6. Date Of Next Meeting

Next meeting to be held at 9.30 on November 14th 2003, Pompeiian Room, Hinxton Hall