Package org.emboss.jemboss.programs

Class Summary
BatchUpdateTimer Timer for updating the Jemboss job manager for batch jobs submitted
JembossProcess Monitor for Jemboss batch processes
ListFile Parse an EMBOSS list file, reading it in line by line, loading other list files recursively if necessary, and loading any files referred to into the filesToMove hash
ResultList Holds the list of stored results.
ResultsUpdateTimer Timer for updating saved results window for batch jobs submitted
RunEmbossApplication RunEmbossApplication class used to run an EMBOSS process
RunEmbossApplication2 RunEmbossApplication2 class used to run an EMBOSS process this reads stdout and stderr in separate threads.