ALIGNMENT LOCAL

 

Local sequence alignment

Program nameDescription
matcher Waterman-Eggert local alignment of two sequences
seqmatchall All-against-all word comparison of a sequence set
supermatcher Calculate approximate local pair-wise alignments of larger sequences
water Smith-Waterman local alignment of sequences
wordfinder Match large sequences against one or more other sequences
wordmatch Finds regions of identity (exact matches) of two sequences