STRUCTURE Applications

The STRUCTURE programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current structure release

Program name Description
contacts Generate intra-chain CON files from CCF files
domainer Generates domain CCF files from protein CCF files
hetparse Converts heterogen group dictionary to EMBL-like format
interface Generate inter-chain CON files from CCF files
pdbparse Parses PDB files and writes protein CCF files
pdbplus Add accessibility & secondary structure to a CCF file
pdbtosp Convert swissprot:PDB codes file to EMBL-like format
sites Generate residue-ligand CON files from CCF files