Next:
What is EMBOSS?
Introduction to Sequence Analysis using EMBOSS
Date:
What is EMBOSS?
So, what is EMBOSS?
Working with EMBOSS
How this tutorial is organised
wossname
: a first EMBOSS application
Exercise:
wossname
Working with sequences
Retrieving sequences from databases
Exercise:
showdb
seqret
Exercise:
seqret
Reading sequences from files
Getting information about sequences
infoseq
Sequence annotation
Using multiple sequences
Listfiles
Pairwise sequence alignment
Dotplots
Exercise: Making a dotplot
Exercise: Examining dotplot parameters
Global alignment
Exercise:
needle
Local alignment
Exercise:
water
Protein analysis
Identifying the ORF
Exercise:
plotorf
Exercise:
getorf
Translating the sequence
Exercise:
transeq
USA for partial sequences
Examples
Secondary structure prediction
pepinfo
Exercise:
pepinfo
Predicting transmembrane regions
Exercise:
tmap
Patterns, profiles and multiple sequence alignment
Pattern matching
Exercise:
patmatmotifs
Report formats
Protein fingerprints
Exercise:
pscan
Multiple Sequence Analysis
Exercise: Retrieving a set of sequences
Exercise:
emma
Exercise:
prettyplot
Profiles
Exercise:
prophecy
Exercise:
prophet
Conclusion
Exercise:
tfm
Bibliography
About this document ...
Gary Williams
2003-04-29
