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EMBOSS Servers

Contents

Please note that the lists below are by no means comprehensive. If you know of other relevant portals, servers, mirrors etc please email emboss-bug@emboss.open-bio.org with details.

EMBOSS portals

The following sites offer an alternative view on the EMBOSS documentation and typically provide access to EMBOSS applications and support (sometimes just for registered users) and training materials.

Swiss EMBNet node
The Centre for Genomics and Bioinformatics, Indiana University.
Max-Planck-Institut für Molekulare Genetik, Berlin, Germany
The Finnish IT Centre for Science
Canadian Bioinformatics Resource
Computational Biology Research Group (CBRG), Oxford, UK.
Pittsburgh Supercomputing Center, USA.
The Forsyth Institute Bioinformatics, Boston, USA.
The Institut Pasteur, France

EMBOSS servers (based on PISE)

The following sites are EMBOSS servers based on the Pise program.

The MRC Clinical Sciences Centre, Imperial College, London.
Wellcome Trust Centre for Human Genetics, Oxford, UK

EMBOSS servers (based on EMBOSS Explorer)

The following sites are EMBOSS servers based on the EMBOSS Explorer program.

Wageningen Bioinformatics Webportal, Netherlands
The Centre for Genomics and Bioinformatics, Indiana University.
Computer Centre, The University of Hong Kong
Cancer Vaccine Centre (Bioinformatics), Harvard University.
National Centre for High-Performance Computing, Taiwan.
Singapore Biomedical Computing Resource.
Robert Cedergren Center, Université de Montréal, Canada.
GSC, Japan
Centre for Comparative Genomics, Murdoch University, Australia
The University of Kansas Bioinformatics Core Facility
Southern Methodist University, Dallas, USA.
Purdue University, Indiana, USA
The Bioinformatics Center, National University of Singapore.
The University of Florida, USA.
The National Health Research Institute, Taiwan
Center for Genomics, Proteomics, and Bioinformatic, University of Hawaii at Manoa, Honolulu
Virginia Bioinformatics Institute, USA
Canadian Bioinformatics Resource

Other servers

The sites below are EMBOSS servers that are not based on PISE or EMBOSS Explorer.

EMBOSS on a Biowulf cluster at the NIH
An SRS EMBOSS server
EMBOSS server from the Institute of Applied Genetics and Cell Biology (IAGC), University of Agricultural Sciences, Vienna
Web forms to a few EMBOSS applications from the EBI, UK.

Mirrors of the EMBOSS documentation

The sites below mirror the EMBOSS documentation.

Helix at NIH, USA
Universite Libre Del Bruxelles, Belgium
UCSF, USA
The NERC Environmental Bioinformatics Centre, UK
MDC, Berlin-Buch, Germany
Heidelberg, Germany

Miscellaenous links

The sites below provide miscellaneous EMBOSS documentation and training materials.

Table of equivalent Programs in EMBOSS and GCG from Helix Systems at NIH
Table of equivalent Programs in EMBOSS and GCG from the Italian EMBNet node
Table of equivalent Programs in EMBOSS and GCG from the Norway EMBNet node
Table of replacement for much used GCG programs
An EMBOSS Manual from Thomas Girke at University of California, Riverside.
EMBOSS Quick Guide as a pdf, from CSC, the Finnish IT Centre for Science
EMBOSS, EMBASSY, and Jemboss on SGI
A nice tutorial on EMBOSS and Luke McCarthy's interface
The Centre for Computational Biology, Hospital for Sick Children, University of Toronto, USA