org.emboss.jemboss.gui.form
Class SetInFileCard

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.Box
                  org.emboss.jemboss.gui.form.SetInFileCard

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public class SetInFileCard

extends javax.swing.Box

Input sequence file card

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.Box

javax.swing.Box.AccessibleBox, javax.swing.Box.Filler

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

private CutNPasteTextArea	cutnPaste cut and paste text area
private FileChooser	fileChoose sequence file choser
private int	h gui handle number
private InputSequenceAttributes[]	inSeqAttr input sequence attributes
private boolean	isCut selecting cut and paste sequence input
private boolean	isFile selecting sequence file input (default)
private boolean	isList selecting list file input
private ListFilePanel	listPane list file panel

Fields inherited from class javax.swing.Box

accessibleContext

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Container

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SetInFileCard(javax.swing.JPanel sectionPane, int h, java.lang.String[] db, java.lang.String name, java.lang.String appName, InputSequenceAttributes[] inSeqAttr, boolean fopt, JembossParams mysettings)
Build the GUI components for an input sequence(s).

Method Summary

void	doReset() Reset all text areas for sequence entering
java.lang.String[]	getArrayListFile()
java.lang.String	getCutNPasteText()
java.lang.String	getFileChosen()
java.lang.String	getListFile()
java.lang.String	getSequence(int n) Return a sequence from a list of sequences
boolean	isCutNPase()
boolean	isFileName()
boolean	isListFile()
boolean	writeListFile(java.lang.String fn)

Methods inherited from class javax.swing.Box

createGlue, createHorizontalBox, createHorizontalGlue, createHorizontalStrut, createRigidArea, createVerticalBox, createVerticalGlue, createVerticalStrut, getAccessibleContext, setLayout

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getUIClassID, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, paramString, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update, updateUI

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

isFile

private boolean isFile

selecting sequence file input (default)

isCut

private boolean isCut

selecting cut and paste sequence input

isList

private boolean isList

selecting list file input

fileChoose

private FileChooser fileChoose

sequence file choser

cutnPaste

private CutNPasteTextArea cutnPaste

cut and paste text area

listPane

private ListFilePanel listPane

list file panel

inSeqAttr

private InputSequenceAttributes[] inSeqAttr

input sequence attributes

h

private int h

gui handle number

Constructor Detail

SetInFileCard

public SetInFileCard(javax.swing.JPanel sectionPane,
                     int h,
                     java.lang.String[] db,
                     java.lang.String name,
                     java.lang.String appName,
                     InputSequenceAttributes[] inSeqAttr,
                     boolean fopt,
                     JembossParams mysettings)

Build the GUI components for an input sequence(s).

Parameters:

sectionPane - acd section panel

h - GUI handle

db - database list

name - for the file card

appName - application name

inSeqAttr - input sequence attributes

mysettings - jemboss properties

Method Detail

isFileName

public boolean isFileName()

Returns:

true if selected to use a file name

isCutNPase

public boolean isCutNPase()

Returns:

true if selected to use cut 'n paste text

isListFile

public boolean isListFile()

Returns:

true if selected to use list of filenames

getFileChosen

public java.lang.String getFileChosen()

Returns:

file or database name

writeListFile

public boolean writeListFile(java.lang.String fn)

getCutNPasteText

public java.lang.String getCutNPasteText()

Returns:

cut 'n pasted text

getListFile

public java.lang.String getListFile()

Returns:

list of sequence filenames

getArrayListFile

public java.lang.String[] getArrayListFile()

Returns:

string array of the list of sequence filenames

getSequence

public java.lang.String getSequence(int n)

Return a sequence from a list of sequences

Parameters:

n - sequence number in the list

Returns:

sequence filename

doReset

public void doReset()

Reset all text areas for sequence entering