org.emboss.jemboss.gui.sequenceChooser
Class OutputSequenceAttributes

java.lang.Object
  org.emboss.jemboss.gui.sequenceChooser.OutputSequenceAttributes

public class OutputSequenceAttributes

extends java.lang.Object

Creates the output sequence attibutes window

Field Summary

private java.lang.String[]	ff output format types
private javax.swing.JComboBox	fileFormats combobox for file formats
private javax.swing.JTextField	offormat feature format
private javax.swing.JTextField	ofname features filename
private javax.swing.JTextField	osextension ouput file extension to use
private javax.swing.JTextField	osname output base name
private javax.swing.JRadioButton	ossingle separate file for each entry
private javax.swing.JScrollPane	rscroll scroll pane for output attributes
private javax.swing.JTextField	UFO uniform feature object

Constructor Summary

OutputSequenceAttributes()

Method Summary

java.lang.String	getFormatChoosen() Get the format selected
javax.swing.JScrollPane	getJScrollPane() Get the scoll panel
java.lang.String	getOuputSeqAttr() Get the EMBOSS command line for the output sequence attributes
boolean	isExtensionDefault() Determine if an extension has been selected
boolean	isFNameDefault() Determine if a feature name is set
boolean	isNameDefault() Determine if a output file name is set
boolean	isUFODefault() Determine if UFO has a value

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

osextension

private javax.swing.JTextField osextension

ouput file extension to use

osname

private javax.swing.JTextField osname

output base name

offormat

private javax.swing.JTextField offormat

feature format

ofname

private javax.swing.JTextField ofname

features filename

UFO

private javax.swing.JTextField UFO

uniform feature object

ossingle

private javax.swing.JRadioButton ossingle

separate file for each entry

fileFormats

private javax.swing.JComboBox fileFormats

combobox for file formats

rscroll

private javax.swing.JScrollPane rscroll

scroll pane for output attributes

ff

private java.lang.String[] ff

output format types

Constructor Detail

OutputSequenceAttributes

public OutputSequenceAttributes()

Method Detail

getJScrollPane

public javax.swing.JScrollPane getJScrollPane()

Get the scoll panel

Returns:

scroll panel

getFormatChoosen

public java.lang.String getFormatChoosen()

Get the format selected

Returns:

selected format

isUFODefault

public boolean isUFODefault()

Determine if UFO has a value

Returns:

true if a value has been set

isExtensionDefault

public boolean isExtensionDefault()

Determine if an extension has been selected

Returns:

true if a value has been set

isNameDefault

public boolean isNameDefault()

Determine if a output file name is set

Returns:

true if a value has been set

isFNameDefault

public boolean isFNameDefault()

Determine if a feature name is set

Returns:

true if a value has been set

getOuputSeqAttr

public java.lang.String getOuputSeqAttr()

Get the EMBOSS command line for the output sequence attributes

Returns:

output attibutes command line options