org.emboss.jemboss.server
Class JembossThread

java.lang.Object
  java.lang.Thread
      org.emboss.jemboss.server.JembossThread

All Implemented Interfaces:

java.lang.Runnable

public class JembossThread

extends java.lang.Thread

Use to run an EMBOSS application in batch mode by running the process in a separate thread

Field Summary

private java.lang.String	project project directory
private RunEmbossApplication2	rea runs the emboss process

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

JembossThread(RunEmbossApplication2 rea, java.lang.String project)

Method Summary

private void	createFinishedFile() Creates a file named "finished" in the project directory, that contains a time stamp.
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getContextClassLoader, getName, getPriority, getThreadGroup, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setName, setPriority, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

rea

private RunEmbossApplication2 rea

runs the emboss process

project

private java.lang.String project

project directory

Constructor Detail

JembossThread

public JembossThread(RunEmbossApplication2 rea,
                     java.lang.String project)

Parameters:

rea - runs the emboss process

project - project directory

Method Detail

run

public void run()

createFinishedFile

private void createFinishedFile()

Creates a file named "finished" in the project directory, that contains a time stamp.