Majority-rule and strict consensus tree
Version: EMBOSS:6.6.0.0

   Standard (Mandatory) qualifiers (* if not always prompted):
  [-infile]            infile     Phylip tree file
*  -og                 toggle     [N] Outgroup root
*  -outgnum            integer    [1] Number of the outgroup (Integer 1 or
                                  more)
  [-outfile]           outfile    [econsense.outfile] Phylip consense program
                                  output file
   -[no]trout          boolean    [Y] Create a tree file
  [-treefile]          outfile    [*.econsense] Phylip tree output file

   Additional (Optional) qualifiers:
   -root               toggle     [N] Trees to be treated as rooted
   -[no]drawtree       boolean    [Y] Draw tree
   -progress           boolean    [N] Print indications of progress of run
   -[no]printsets      boolean    [Y] Print out the sets of species

   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:

   "-outfile" associated qualifiers
   -odirectory2        string     Output directory

   "-treefile" associated qualifiers
   -odirectory3        string     Output directory

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

(A,(B,(H,(D,(J,(((G,E),(F,I)),C))))));
(A,(B,(D,((J,H),(((G,E),(F,I)),C)))));
(A,(B,(D,(H,(J,(((G,E),(F,I)),C))))));
(A,(B,(E,(G,((F,I),((J,(H,D)),C))))));
(A,(B,(E,(G,((F,I),(((J,H),D),C))))));
(A,(B,(E,((F,I),(G,((J,(H,D)),C))))));
(A,(B,(E,((F,I),(G,(((J,H),D),C))))));
(A,(B,(E,((G,(F,I)),((J,(H,D)),C)))));
(A,(B,(E,((G,(F,I)),(((J,H),D),C)))));

Majority-rule and strict consensus tree program, version 3.57c.650

Species in order: 

  A
  B
  H
  D
  J
  G
  E
  F
  I
  C


Sets included in the consensus tree

Set (species in order)     How many times out of   9.00

.......**.                   9.00
..********                   9.00
..***....*                   6.00
..****.***                   6.00
..***.....                   6.00
..*.*.....                   4.00
..***..***                   2.00


Sets NOT included in consensus tree:

Set (species in order)     How many times out of   9.00

.....**...                   3.00
.....****.                   3.00
..**......                   3.00
.....*****                   3.00
..*.******                   2.00
.....*.**.                   2.00
..****...*                   2.00
....******                   2.00
...*******                   1.00


CONSENSUS TREE:
the numbers at the forks indicate the number
of times the group consisting of the species
which are to the right of that fork occurred
among the trees, out of   9.00 trees

  +---------------------------------------A                   
  !
  !         +-----------------------------E                   
  !         !
  !         !                        +----I                   
  !         !         +------------9.0
  !         !         !              +----F                   
  !    +--9.0         !
  !    !    !    +--2.0         +---------D                   
  !    !    !    !    !    +--6.0
  !    !    !    !    !    !    !    +----J                   
  !    !    !    !    +--6.0    +--4.0
  +--9.0    +--6.0         !         +----H                   
       !         !         !
       !         !         +--------------C                   
       !         !
       !         +------------------------G                   
       !
       +----------------------------------B                   


  remember: this is an unrooted tree!

(A:9.0,((E:9.0,(((I:9.0,F:9.0):9.0,((D:9.0,(J:9.0,H:9.0):4.0):6.0,C:9.0):6.0):2.0,G:9.0):6.0):9.0,
B:9.0):9.0);