EMBASSY: MIRA: emiraest

emiraest

Wiki

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Function

MIRAest fragment assembly program

Description

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Algorithm

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Usage

Here is a sample session with emiraest

% emiraest -setparam fasta MIRAest fragment assembly program Basename for index files [mira]: Error while trying to load parameter file me_step1.par Setting defaults for this step.Error while trying to load parameter file me_step2.par Setting defaults for this step.Error while trying to load parameter file me_step3.par Setting defaults for this step. This is miraEST V2.8.3 (production version) for EST SNP analysis in strains. Please cite: Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A. J., Mueller, W. E., Wetter, T. and Suhai, S. (2004), Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs. Genome Research, 14(6). Mail questions, bug reports, ideas or suggestions to: bach@chevreux.org Compiled in boundtracking mode. Compiled in bugtracking mode. -SB:sbuip is 3, but must be no more than 1. Setting to 1 Parsing parameters: -fasta Using quickmode switch fasta : -GE:lj=fasta Parameters parsed without error, perfect. Loading parameters from file: me_step1.par -SB:sbuip is 3, but must be no more than 1. Setting to 1 Starting step 1: assembling all reads of all strains. Setting some standard parameters. Used parameter settings: General (-GE): Project name (pro) : step1 Load job (lj) : FASTA file (fasta) Filecheck only (fo) : No External quality (eq) : from SCF (scf) Ext. qual. override (eqo) : No Discard reads on e.q. error (droeqe): No Read naming scheme (rns) : Sanger Institute (sanger) Merge with XML trace info (mxti) : No Use template information (uti) : Yes EST-assembly start step (ess) : 1 Assembly options (-AS): Minimum read length (mrl) : 80 Number of passes (nop) : 1 Skim each pass (sep) : Yes Maximum number of RMB break loops (rbl) : 20 Spoiler detection (sd) : No Last pass only (sdlpo) : Yes Base default quality (bdq) : Yes Use genomic pathfinder (ugpf) : Yes Use emergency search stop (uess) : Yes ESS partner depth (esspd) : 500 Use emergency blacklist (uebl) : Yes Use max. contig build time (umcbt) : No Build time in seconds (bts) : 10000 Strain and backbone options (-SB): Load straindata (lsd) : Yes Load backbone (lb) : No Start backbone usage in pass (sbuip): 1 Backbone strain name (bsn) : (none) Backbone file type (bft) : FASTA file (fasta) Backbone rail length (brl) : 2500 Backbone base quality (bbq) : 0 Also build new contigs (abnc) : Yes Dataprocessing options (-DP): Use read extensions (ure) : No Read extension window length (rewl) : 30 Read extension w. maxerrors (rewme) : 2 First extension in pass (feip) : 0 Last extension in pass (leip) : 0 Tag poly A/T at ends (tpae) : Yes Polybase window length (pbwl) : 7 Polybase window maxerrors (pbwme) : 2 Polyb. window grace distance (pbwgc): 9 Clipping options (-CL): Possible vector leftover clip (pvc) : Yes maximum len allowed (pvcmla) : 12 Quality clip (qc) : Yes Minimum quality (qcmq) : 20 Window length (qcwl) : 30 Masked bases clip (mbc) : Yes Gap size (mbcgs) : 25 Max front gap (mbcmfg) : 40 Max end gap (mbcmeg) : 80 Ensure minimum left clip (emlc) : Yes Minimum left clip req. (mlcr) : 25 Set minimum left clip to (smlc) : 30 Parameters for SKIM algorithm (-SK): Bases per hash (bph) : 16 Hash save stepping (hss) : 4 Percent required (pr) : 25 Maximum hashes in memory (mhim) : 15000000 Max hits per read (mhpr) : 200 Align parameters for Smith-Waterman align (-AL): Bandwidth in percent (bip) : 15 Bandwidth max (bmax) : 100 Bandwidth min (bmin) : 25 Minimum score (ms) : 15 Minimum overlap (mo) : 15 Minimum relative score in % (mrs) : 65 Extra gap penalty (egp) : Yes extra gap penalty level (egpl) : low Max. egp in percent (megpp) : 100 Contig parameters (-CO): Name prefix (np) : step1 Error analysis (an) : SCF signal (signal) Reject on drop in relative alignment score (%) : 15 Max. error rate in dangerous zones in % (dmer) : 1 Mark repeats (mr) : Yes Assume SNP instead of repeats (asir) : No Minimum reads per group needed for tagging (mrpg) : 2 Minimum neighbour quality needed for tagging (mnq) : 20 Minimum Group Quality needed for RMB Tagging (mgqrt) : 30 End-read Marking Exclusion Area in bases (emea) : 15 Also mark gap bases (amgb) : Yes Also mark gap bases - even multicolumn (amgbemc) : Yes Also mark gap bases - need both strands (amgbnbs): Yes Default template insert size minimum (dismin) : 500 Default template insert size maximum (dismax) : 5000 Edit options (-ED): Automatic contig editing (ace) : No Strict editing mode (sem) : No Confirmation threshold in percent (ct): 50 Directories (-DI): When loading EXP files: When loading SCF files: For writing log files : step1_log For writing gap4 DA res.: step1_out Input files (-FI): When loading EXP fofn : step1_in.fofn When loading project from PHD : step1_in.phd.1 When loading project from CAF : step1_in.caf When loading sequences from FASTA : step1_in.fasta When loading qualities from FASTA quality: step1_in.fasta.qual When loading straindata : step1_straindata_in.txt When loading XML trace info files : step1_traceinfo_in.xml When loading backbone from CAF : step1_backbone_in.caf When loading backbone from GenBank : step1_backbone_in.gbf When loading backbone from FASTA : step1_backbone_in.fasta Output files (-OUTPUT/-OUT): Result files: Saved as CAF (orc): Yes Saved as FASTA (orf): Yes Saved as GAP4 (directed assembly) (org): Yes Saved as phrap ACE (ora): No Saved as HTML (orh): No Saved as Transposed Contig Summary (ors): No Saved as simple text format (ort): No Temporary result files: Saved as CAF (otc): No Saved as FASTA (otf): No Saved as GAP4 (directed assembly) (otg): No Saved as phrap ACE (ota): No Saved as HTML (oth): No Saved as Transposed Contig Summary(ots): No Saved as simple text format (ott): No Extended temporary result files: Saved as CAF (oetc): No Saved as FASTA (oetf): No Saved as GAP4 (directed assembly) (oetg): No Saved as phrap ACE (oeta): No Saved as HTML (oeth): No Save also singlets (oetas): No Alignment output customisation: TEXT characters per line (tcpl): 60 HTML characters per line (hcpl): 60 TEXT characters per line (tegfc): ' ' HTML characters per line (hegfc): ' ' File / directory names: CAF : step1_out.caf FASTA : step1_out.unpadded.fasta FASTA quality : step1_out.unpadded.fasta.qual FASTA (padded) : step1_out.padded.fasta FASTA qual.(pad): step1_out.padded.fasta.qual GAP4 (directory): step1_out.gap4da ACE : step1_out.ace HTML : step1_out.html Simple text : step1_out.txt TCS overview : step1_out.tcs Creating directory step1_log ... done. Creating directory step1_results ... done. Creating directory step1_info ... done. Localtime: Thu Jul 15 12:00:00 2010 Loading data normal (probably Sanger type) from FASTA file step1_in.fasta Counting sequences in FASTA file: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Loading sequence data from FASTA file: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Loading quality data from FASTA quality file: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Done. There haven been 2396 reads given, 2396 of which have quality accounted for. Localtime: Thu Jul 15 12:00:00 2010 Checking SCF files (loading qualities only if needed): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Done. 0 SCF files loaded ok. 2396 SCF files were not found (see 'step1_log/step1_info_scfreadfail.0' for a list of names). Starting clips: quality, masked characters done. Localtime: Thu Jul 15 12:00:00 2010 Loading straindata. Building hash table ... done. Read 0 straindata lines. Warning: gnlti136477494 has no strain. Using default strain. Warning: gnlti136477495 has no strain. Using default strain. Warning: gnlti136477496 has no strain. Using default strain. Warning: gnlti136477497 has no strain. Using default strain. Warning: gnlti136477498 has no strain. Using default strain. Warning: gnlti136477499 has no strain. Using default strain. Warning: gnlti136477500 has no strain. Using default strain. Warning: gnlti136477501 has no strain. Using default strain. Warning: gnlti136477502 has no strain. Using default strain. Warning: gnlti136477503 has no strain. Using default strain. Warning: gnlti136477504 has no strain. Using default strain. Warning: gnlti136477505 has no strain. Using default strain. Warning: gnlti136477506 has no strain. Using default strain. Warning: gnlti136477507 has no strain. Using default strain. Warning: gnlti136477508 has no strain. Using default strain. Warning: gnlti136477509 has no strain. Using default strain. Warning: gnlti136477510 has no strain. Using default strain. Warning: gnlti136477511 has no strain. Using default strain. Warning: gnlti136477512 has no strain. Using default strain. Warning: gnlti136477513 has no strain. Using default strain. Warning: gnlti136477514 has no strain. Using default strain. Warning: gnlti136477515 has no strain. Using default strain. Warning: gnlti136477516 has no strain. Using default strain. Warning: gnlti136477517 has no strain. Using default strain. Warning: gnlti136477518 has no strain. Using default strain. 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Warning: gnlti136477551 has no strain. Using default strain. Warning: gnlti136477552 has no strain. Using default strain. Warning: gnlti136477553 has no strain. Using default strain. Warning: gnlti136477554 has no strain. Using default strain. Warning: gnlti136477555 has no strain. Using default strain. Warning: gnlti136477556 has no strain. Using default strain. Warning: gnlti136477557 has no strain. Using default strain. Warning: gnlti136477558 has no strain. Using default strain. Warning: gnlti136477559 has no strain. Using default strain. Warning: gnlti136477560 has no strain. Using default strain. Warning: gnlti136477561 has no strain. Using default strain. Warning: gnlti136477562 has no strain. Using default strain. Warning: gnlti136477563 has no strain. Using default strain. Warning: gnlti136477564 has no strain. Using default strain. Warning: gnlti136477565 has no strain. Using default strain. Warning: gnlti136477566 has no strain. Using default strain. Warning: gnlti136477567 has no strain. Using default strain. Warning: gnlti136477568 has no strain. Using default strain. Warning: gnlti136477569 has no strain. Using default strain. Warning: gnlti136477570 has no strain. Using default strain. Warning: gnlti136477571 has no strain. Using default strain. Warning: gnlti136477572 has no strain. Using default strain. Warning: gnlti136477573 has no strain. Using default strain. Warning: gnlti136477574 has no strain. Using default strain. Warning: gnlti136477575 has no strain. Using default strain. Warning: gnlti136477576 has no strain. Using default strain. Warning: gnlti136477577 has no strain. Using default strain. Warning: gnlti136477578 has no strain. Using default strain. Warning: gnlti136477579 has no strain. Using default strain. Warning: gnlti136477580 has no strain. Using default strain. Warning: gnlti136477581 has no strain. Using default strain. Warning: gnlti136477582 has no strain. Using default strain. Warning: gnlti136477583 has no strain. Using default strain. Warning: gnlti136477584 has no strain. Using default strain. Warning: gnlti136477585 has no strain. Using default strain. Warning: gnlti136477586 has no strain. Using default strain. Warning: gnlti136477587 has no strain. Using default strain. Warning: gnlti136477588 has no strain. Using default strain. Warning: gnlti136477589 has no strain. Using default strain. Warning: gnlti136477590 has no strain. Using default strain. Warning: gnlti136477591 has no strain. Using default strain. Warning: gnlti136477592 has no strain. Using default strain. Warning: gnlti136477593 has no strain. Using default strain. Warning: gnlti136477594 has no strain. Using default strain. Warning: gnlti136477595 has no strain. Using default strain. Warning: gnlti136477596 has no strain. Using default strain. Warning: gnlti136477597 has no strain. Using default strain. Warning: gnlti136477598 has no strain. Using default strain. 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Warning: gnlti136477631 has no strain. Using default strain. Warning: gnlti136477632 has no strain. Using default strain. Warning: gnlti136477633 has no strain. Using default strain. Warning: gnlti136477634 has no strain. Using default strain. Warning: gnlti136477635 has no strain. Using default strain. Warning: gnlti136477636 has no strain. Using default strain. Warning: gnlti136477637 has no strain. Using default strain. Warning: gnlti136477638 has no strain. Using default strain. Warning: gnlti136477639 has no strain. Using default strain. Warning: gnlti136477640 has no strain. Using default strain. Warning: gnlti136477641 has no strain. Using default strain. Warning: gnlti136477642 has no strain. Using default strain. Warning: gnlti136477643 has no strain. Using default strain. Warning: gnlti136477644 has no strain. Using default strain. Warning: gnlti136477645 has no strain. Using default strain. Warning: gnlti136477646 has no strain. Using default strain. 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Warning: gnlti136477663 has no strain. Using default strain. Warning: gnlti136477664 has no strain. Using default strain. Warning: gnlti136477665 has no strain. Using default strain. Warning: gnlti136477666 has no strain. Using default strain. Warning: gnlti136477667 has no strain. Using default strain. Warning: gnlti136477668 has no strain. Using default strain. Warning: gnlti136477669 has no strain. Using default strain. Warning: gnlti136477670 has no strain. Using default strain. Warning: gnlti136477671 has no strain. Using default strain. Warning: gnlti136477672 has no strain. Using default strain. Warning: gnlti136477673 has no strain. Using default strain. Warning: gnlti136477674 has no strain. Using default strain. Warning: gnlti136477675 has no strain. Using default strain. Warning: gnlti136477676 has no strain. Using default strain. Warning: gnlti136477677 has no strain. Using default strain. Warning: gnlti136477678 has no strain. Using default strain. 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Warning: gnlti136477711 has no strain. Using default strain. Warning: gnlti136477712 has no strain. Using default strain. Warning: gnlti136477713 has no strain. Using default strain. Warning: gnlti136477714 has no strain. Using default strain. Warning: gnlti136477715 has no strain. Using default strain. Warning: gnlti136477716 has no strain. Using default strain. Warning: gnlti136477717 has no strain. Using default strain. Warning: gnlti136477718 has no strain. Using default strain. Warning: gnlti136477719 has no strain. Using default strain. Warning: gnlti136477720 has no strain. Using default strain. Warning: gnlti136477721 has no strain. Using default strain. Warning: gnlti136477722 has no strain. Using default strain. Warning: gnlti136477723 has no strain. Using default strain. Warning: gnlti136477724 has no strain. Using default strain. Warning: gnlti136477725 has no strain. Using default strain. Warning: gnlti136477726 has no strain. Using default strain. 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Warning: gnlti136477791 has no strain. Using default strain. Warning: gnlti136477792 has no strain. Using default strain. Warning: gnlti136477793 has no strain. Using default strain. Warning: gnlti136477794 has no strain. Using default strain. Warning: gnlti136477795 has no strain. Using default strain. Warning: gnlti136477796 has no strain. Using default strain. Warning: gnlti136477797 has no strain. Using default strain. Warning: gnlti136477798 has no strain. Using default strain. Warning: gnlti136477799 has no strain. Using default strain. Warning: gnlti136477800 has no strain. Using default strain. Warning: gnlti136477801 has no strain. Using default strain. Warning: gnlti136477802 has no strain. Using default strain. Warning: gnlti136477803 has no strain. Using default strain. Warning: gnlti136477804 has no strain. Using default strain. Warning: gnlti136477805 has no strain. Using default strain. Warning: gnlti136477806 has no strain. Using default strain. Warning: gnlti136477807 has no strain. Using default strain. Warning: gnlti136477808 has no strain. Using default strain. Warning: gnlti136477809 has no strain. Using default strain. Warning: gnlti136477810 has no strain. Using default strain. Warning: gnlti136477811 has no strain. Using default strain. Warning: gnlti136477812 has no strain. Using default strain. Warning: gnlti136477813 has no strain. Using default strain. Warning: gnlti136477814 has no strain. Using default strain. Warning: gnlti136477815 has no strain. Using default strain. Warning: gnlti136477816 has no strain. Using default strain. Warning: gnlti136477817 has no strain. Using default strain. Warning: gnlti136477818 has no strain. Using default strain. Warning: gnlti136477819 has no strain. Using default strain. Warning: gnlti136477820 has no strain. Using default strain. Warning: gnlti136477821 has no strain. Using default strain. Warning: gnlti136477822 has no strain. Using default strain. Warning: gnlti136477823 has no strain. Using default strain. Warning: gnlti136477824 has no strain. Using default strain. Warning: gnlti136477825 has no strain. Using default strain. Warning: gnlti136477826 has no strain. Using default strain. Warning: gnlti136477827 has no strain. Using default strain. Warning: gnlti136477828 has no strain. Using default strain. Warning: gnlti136477829 has no strain. Using default strain. Warning: gnlti136477830 has no strain. Using default strain. Warning: gnlti136477831 has no strain. Using default strain. Warning: gnlti136477832 has no strain. Using default strain. Warning: gnlti136477833 has no strain. Using default strain. Warning: gnlti136477834 has no strain. Using default strain. Warning: gnlti136477835 has no strain. Using default strain. Warning: gnlti136477836 has no strain. Using default strain. Warning: gnlti136477837 has no strain. Using default strain. Warning: gnlti136477838 has no strain. Using default strain. Warning: gnlti136477839 has no strain. Using default strain. Warning: gnlti136477840 has no strain. Using default strain. Warning: gnlti136477841 has no strain. Using default strain. Warning: gnlti136477842 has no strain. Using default strain. Warning: gnlti136477843 has no strain. Using default strain. Warning: gnlti136477844 has no strain. Using default strain. Warning: gnlti136477845 has no strain. Using default strain. Warning: gnlti136477846 has no strain. Using default strain. Warning: gnlti136477847 has no strain. Using default strain. Warning: gnlti136477848 has no strain. Using default strain. Warning: gnlti136477849 has no strain. Using default strain. Warning: gnlti136477850 has no strain. Using default strain. Warning: gnlti136477851 has no strain. Using default strain. Warning: gnlti136477852 has no strain. Using default strain. Warning: gnlti136477853 has no strain. Using default strain. Warning: gnlti136477854 has no strain. Using default strain. Warning: gnlti136477855 has no strain. Using default strain. Warning: gnlti136477856 has no strain. Using default strain. Warning: gnlti136477857 has no strain. Using default strain. Warning: gnlti136477858 has no strain. Using default strain. Warning: gnlti136477859 has no strain. Using default strain. Warning: gnlti136477860 has no strain. Using default strain. Warning: gnlti136477861 has no strain. Using default strain. Warning: gnlti136477862 has no strain. Using default strain. Warning: gnlti136477863 has no strain. Using default strain. Warning: gnlti136477864 has no strain. Using default strain. Warning: gnlti136477865 has no strain. Using default strain. Warning: gnlti136477866 has no strain. Using default strain. Warning: gnlti136477867 has no strain. Using default strain. Warning: gnlti136477868 has no strain. Using default strain. Warning: gnlti136477869 has no strain. Using default strain. Warning: gnlti136477870 has no strain. Using default strain. Warning: gnlti136477871 has no strain. Using default strain. Warning: gnlti136477872 has no strain. Using default strain. Warning: gnlti136477873 has no strain. Using default strain. Warning: gnlti136477874 has no strain. Using default strain. Warning: gnlti136477875 has no strain. Using default strain. Warning: gnlti136477876 has no strain. Using default strain. Warning: gnlti136477877 has no strain. Using default strain. Warning: gnlti136477878 has no strain. Using default strain. Warning: gnlti136477879 has no strain. Using default strain. Warning: gnlti136477880 has no strain. Using default strain. Warning: gnlti136477881 has no strain. Using default strain. Warning: gnlti136477882 has no strain. Using default strain. Warning: gnlti136477883 has no strain. Using default strain. Warning: gnlti136477884 has no strain. Using default strain. Warning: gnlti136477885 has no strain. Using default strain. Warning: gnlti136477886 has no strain. Using default strain. Warning: gnlti136477887 has no strain. Using default strain. Warning: gnlti136477888 has no strain. Using default strain. Warning: gnlti136477889 has no strain. Using default strain. Warning: gnlti136477890 has no strain. Using default strain. Warning: gnlti136477891 has no strain. Using default strain. Warning: gnlti136477892 has no strain. Using default strain. Warning: gnlti136477893 has no strain. Using default strain. Warning: gnlti136477894 has no strain. Using default strain. Warning: gnlti136477895 has no strain. Using default strain. Warning: gnlti136477896 has no strain. Using default strain. Warning: gnlti136477897 has no strain. Using default strain. Warning: gnlti136477898 has no strain. Using default strain. Warning: gnlti136477899 has no strain. Using default strain. Warning: gnlti136477900 has no strain. Using default strain. Warning: gnlti136477901 has no strain. Using default strain. Warning: gnlti136477902 has no strain. Using default strain. Warning: gnlti136477903 has no strain. Using default strain. Warning: gnlti136477904 has no strain. Using default strain. Warning: gnlti136477905 has no strain. Using default strain. Warning: gnlti136477906 has no strain. Using default strain. Warning: gnlti136477907 has no strain. Using default strain. Warning: gnlti136477908 has no strain. Using default strain. Warning: gnlti136477909 has no strain. Using default strain. Warning: gnlti136477910 has no strain. Using default strain. Warning: gnlti136477911 has no strain. Using default strain. Warning: gnlti136477912 has no strain. Using default strain. Warning: gnlti136477913 has no strain. Using default strain. Warning: gnlti136477914 has no strain. Using default strain. Warning: gnlti136477915 has no strain. Using default strain. Warning: gnlti136477916 has no strain. Using default strain. Warning: gnlti136477917 has no strain. Using default strain. Warning: gnlti136477918 has no strain. Using default strain. Warning: gnlti136477919 has no strain. Using default strain. Warning: gnlti136477920 has no strain. Using default strain. Warning: gnlti136477921 has no strain. Using default strain. Warning: gnlti136477922 has no strain. Using default strain. Warning: gnlti136477923 has no strain. Using default strain. Warning: gnlti136477924 has no strain. Using default strain. Warning: gnlti136477925 has no strain. Using default strain. Warning: gnlti136477926 has no strain. Using default strain. Warning: gnlti136477927 has no strain. Using default strain. Warning: gnlti136477928 has no strain. Using default strain. Warning: gnlti136477929 has no strain. Using default strain. Warning: gnlti136477930 has no strain. Using default strain. Warning: gnlti136477931 has no strain. Using default strain. Warning: gnlti136477932 has no strain. Using default strain. Warning: gnlti136477933 has no strain. Using default strain. Warning: gnlti136477934 has no strain. Using default strain. Warning: gnlti136477935 has no strain. Using default strain. Warning: gnlti136477936 has no strain. Using default strain. Warning: gnlti136477937 has no strain. Using default strain. Warning: gnlti136477938 has no strain. Using default strain. Warning: gnlti136477939 has no strain. Using default strain. Warning: gnlti136477940 has no strain. Using default strain. Warning: gnlti136477941 has no strain. Using default strain. Warning: gnlti136477942 has no strain. Using default strain. Warning: gnlti136477943 has no strain. Using default strain. Warning: gnlti136477944 has no strain. Using default strain. Warning: gnlti136477945 has no strain. Using default strain. Warning: gnlti136477946 has no strain. Using default strain. Warning: gnlti136477947 has no strain. Using default strain. Warning: gnlti136477948 has no strain. Using default strain. Warning: gnlti136477949 has no strain. Using default strain. Warning: gnlti136477950 has no strain. Using default strain. Warning: gnlti136477951 has no strain. Using default strain. Warning: gnlti136477952 has no strain. Using default strain. Warning: gnlti136477953 has no strain. Using default strain. Warning: gnlti136477954 has no strain. Using default strain. Warning: gnlti136477955 has no strain. Using default strain. Warning: gnlti136477956 has no strain. Using default strain. Warning: gnlti136477957 has no strain. Using default strain. Warning: gnlti136477958 has no strain. Using default strain. Warning: gnlti136477959 has no strain. Using default strain. Warning: gnlti136477960 has no strain. Using default strain. Warning: gnlti136477961 has no strain. Using default strain. Warning: gnlti136477962 has no strain. Using default strain. Warning: gnlti136477963 has no strain. Using default strain. Warning: gnlti136477964 has no strain. Using default strain. Warning: gnlti136477965 has no strain. Using default strain. Warning: gnlti136477966 has no strain. Using default strain. Warning: gnlti136477967 has no strain. Using default strain. Warning: gnlti136477968 has no strain. Using default strain. Warning: gnlti136477969 has no strain. Using default strain. Warning: gnlti136477970 has no strain. Using default strain. Warning: gnlti136477971 has no strain. Using default strain. Warning: gnlti136477972 has no strain. Using default strain. Warning: gnlti136477973 has no strain. Using default strain. Warning: gnlti136477974 has no strain. Using default strain. Warning: gnlti136477975 has no strain. Using default strain. Warning: gnlti136477976 has no strain. Using default strain. Warning: gnlti136477977 has no strain. Using default strain. Warning: gnlti136477978 has no strain. Using default strain. Warning: gnlti136477979 has no strain. Using default strain. Warning: gnlti136477980 has no strain. Using default strain. Warning: gnlti136477981 has no strain. Using default strain. Warning: gnlti136477982 has no strain. Using default strain. Warning: gnlti136477983 has no strain. Using default strain. Warning: gnlti136477984 has no strain. Using default strain. Warning: gnlti136477985 has no strain. Using default strain. Warning: gnlti136477986 has no strain. Using default strain. Warning: gnlti136477987 has no strain. Using default strain. Warning: gnlti136477988 has no strain. Using default strain. Warning: gnlti136477989 has no strain. Using default strain. Warning: gnlti136477990 has no strain. Using default strain. Warning: gnlti136477991 has no strain. Using default strain. Warning: gnlti136477992 has no strain. Using default strain. Warning: gnlti136477993 has no strain. Using default strain. Warning: gnlti136477994 has no strain. Using default strain. Warning: gnlti136477995 has no strain. Using default strain. Warning: gnlti136477996 has no strain. Using default strain. Warning: gnlti136477997 has no strain. Using default strain. Warning: gnlti136477998 has no strain. Using default strain. Warning: gnlti136477999 has no strain. Using default strain. Warning: gnlti136478000 has no strain. Using default strain. Warning: gnlti136478001 has no strain. Using default strain. Warning: gnlti136478002 has no strain. Using default strain. Warning: gnlti136478003 has no strain. Using default strain. Warning: gnlti136478004 has no strain. Using default strain. Warning: gnlti136478005 has no strain. Using default strain. Warning: gnlti136478006 has no strain. Using default strain. Warning: gnlti136478007 has no strain. Using default strain. Warning: gnlti136478008 has no strain. Using default strain. Warning: gnlti136478009 has no strain. Using default strain. Warning: gnlti136478010 has no strain. Using default strain. Warning: gnlti136478011 has no strain. Using default strain. Warning: gnlti136478012 has no strain. Using default strain. Warning: gnlti136478013 has no strain. Using default strain. Warning: gnlti136478014 has no strain. Using default strain. Warning: gnlti136478015 has no strain. Using default strain. Warning: gnlti136478016 has no strain. Using default strain. Warning: gnlti136478017 has no strain. Using default strain. Warning: gnlti136478018 has no strain. Using default strain. Warning: gnlti136478019 has no strain. Using default strain. Warning: gnlti136478020 has no strain. Using default strain. Warning: gnlti136478021 has no strain. Using default strain. Warning: gnlti136478022 has no strain. Using default strain. Warning: gnlti136478023 has no strain. Using default strain. Warning: gnlti136478024 has no strain. Using default strain. Warning: gnlti136478025 has no strain. Using default strain. Warning: gnlti136478026 has no strain. Using default strain. Warning: gnlti136478027 has no strain. Using default strain. Warning: gnlti136478028 has no strain. Using default strain. Warning: gnlti136478029 has no strain. Using default strain. Warning: gnlti136478030 has no strain. Using default strain. Warning: gnlti136478031 has no strain. Using default strain. Warning: gnlti136478032 has no strain. Using default strain. Warning: gnlti136478033 has no strain. Using default strain. Warning: gnlti136478034 has no strain. Using default strain. Warning: gnlti136478035 has no strain. Using default strain. Warning: gnlti136478036 has no strain. Using default strain. Warning: gnlti136478037 has no strain. Using default strain. Warning: gnlti136478038 has no strain. Using default strain. Warning: gnlti136478039 has no strain. Using default strain. Warning: gnlti136478040 has no strain. Using default strain. Warning: gnlti136478041 has no strain. Using default strain. Warning: gnlti136478042 has no strain. Using default strain. Warning: gnlti136478043 has no strain. Using default strain. Warning: gnlti136478044 has no strain. Using default strain. Warning: gnlti136478045 has no strain. Using default strain. Warning: gnlti136478046 has no strain. Using default strain. Warning: gnlti136478047 has no strain. Using default strain. Warning: gnlti136478048 has no strain. Using default strain. Warning: gnlti136478049 has no strain. Using default strain. Warning: gnlti136478050 has no strain. Using default strain. Warning: gnlti136478051 has no strain. Using default strain. Warning: gnlti136478052 has no strain. Using default strain. Warning: gnlti136478053 has no strain. Using default strain. Warning: gnlti136478054 has no strain. Using default strain. Warning: gnlti136478055 has no strain. Using default strain. Warning: gnlti136478056 has no strain. Using default strain. Warning: gnlti136478057 has no strain. Using default strain. Warning: gnlti136478058 has no strain. Using default strain. Warning: gnlti136478059 has no strain. Using default strain. Warning: gnlti136478060 has no strain. Using default strain. Warning: gnlti136478061 has no strain. Using default strain. Warning: gnlti136478062 has no strain. Using default strain. Warning: gnlti136478063 has no strain. Using default strain. Warning: gnlti136478064 has no strain. Using default strain. Warning: gnlti136478065 has no strain. Using default strain. Warning: gnlti136478066 has no strain. Using default strain. Warning: gnlti136478067 has no strain. Using default strain. Warning: gnlti136478068 has no strain. Using default strain. Warning: gnlti136478069 has no strain. Using default strain. Warning: gnlti136478070 has no strain. Using default strain. Warning: gnlti136478071 has no strain. Using default strain. Warning: gnlti136478072 has no strain. Using default strain. Warning: gnlti136478073 has no strain. Using default strain. Warning: gnlti136478074 has no strain. Using default strain. Warning: gnlti136478075 has no strain. Using default strain. Warning: gnlti136478076 has no strain. Using default strain. Warning: gnlti136478077 has no strain. Using default strain. Warning: gnlti136478078 has no strain. Using default strain. Warning: gnlti136478079 has no strain. Using default strain. Warning: gnlti136478080 has no strain. Using default strain. Warning: gnlti136478081 has no strain. Using default strain. Warning: gnlti136478082 has no strain. Using default strain. Warning: gnlti136478083 has no strain. Using default strain. Warning: gnlti136478084 has no strain. Using default strain. Warning: gnlti136478085 has no strain. Using default strain. Warning: gnlti136478086 has no strain. Using default strain. Warning: gnlti136478087 has no strain. Using default strain. Warning: gnlti136478088 has no strain. Using default strain. Warning: gnlti136478089 has no strain. Using default strain. Warning: gnlti136478090 has no strain. Using default strain. Warning: gnlti136478091 has no strain. Using default strain. Warning: gnlti136478092 has no strain. Using default strain. Warning: gnlti136478093 has no strain. Using default strain. Warning: gnlti136478094 has no strain. Using default strain. Warning: gnlti136478095 has no strain. Using default strain. Warning: gnlti136478096 has no strain. Using default strain. Warning: gnlti136478097 has no strain. Using default strain. Warning: gnlti136478098 has no strain. Using default strain. Warning: gnlti136478099 has no strain. Using default strain. Warning: gnlti136478100 has no strain. Using default strain. Warning: gnlti136478101 has no strain. Using default strain. Warning: gnlti136478102 has no strain. Using default strain. Warning: gnlti136478103 has no strain. Using default strain. Warning: gnlti136478104 has no strain. Using default strain. Warning: gnlti136478105 has no strain. Using default strain. Warning: gnlti136478106 has no strain. Using default strain. Warning: gnlti136478107 has no strain. Using default strain. Warning: gnlti136478108 has no strain. Using default strain. Warning: gnlti136478109 has no strain. Using default strain. Warning: gnlti136478110 has no strain. Using default strain. Warning: gnlti136478111 has no strain. Using default strain. Warning: gnlti136478112 has no strain. Using default strain. Warning: gnlti136478113 has no strain. Using default strain. Warning: gnlti136478114 has no strain. Using default strain. Warning: gnlti136478115 has no strain. Using default strain. Warning: gnlti136478116 has no strain. Using default strain. Warning: gnlti136478117 has no strain. Using default strain. Warning: gnlti136478118 has no strain. Using default strain. Warning: gnlti136478119 has no strain. Using default strain. Warning: gnlti136478120 has no strain. Using default strain. Warning: gnlti136478121 has no strain. Using default strain. Warning: gnlti136478122 has no strain. Using default strain. Warning: gnlti136478123 has no strain. Using default strain. Warning: gnlti136478124 has no strain. Using default strain. Warning: gnlti136478125 has no strain. Using default strain. Warning: gnlti136478126 has no strain. Using default strain. Warning: gnlti136478127 has no strain. Using default strain. Warning: gnlti136478128 has no strain. Using default strain. Warning: gnlti136478129 has no strain. Using default strain. Warning: gnlti136478130 has no strain. Using default strain. Warning: gnlti136478131 has no strain. Using default strain. Warning: gnlti136478132 has no strain. Using default strain. Warning: gnlti136478133 has no strain. Using default strain. Warning: gnlti136478134 has no strain. Using default strain. Warning: gnlti136478135 has no strain. Using default strain. Warning: gnlti136478136 has no strain. Using default strain. Warning: gnlti136478137 has no strain. Using default strain. Warning: gnlti136478138 has no strain. Using default strain. Warning: gnlti136478139 has no strain. Using default strain. Warning: gnlti136478140 has no strain. Using default strain. Warning: gnlti136478141 has no strain. Using default strain. Warning: gnlti136478142 has no strain. Using default strain. Warning: gnlti136478143 has no strain. Using default strain. Warning: gnlti136478144 has no strain. Using default strain. Warning: gnlti136478145 has no strain. Using default strain. Warning: gnlti136478146 has no strain. Using default strain. Warning: gnlti136478147 has no strain. Using default strain. Warning: gnlti136478148 has no strain. Using default strain. Warning: gnlti136478149 has no strain. Using default strain. Warning: gnlti136478150 has no strain. Using default strain. Warning: gnlti136478151 has no strain. Using default strain. Warning: gnlti136478152 has no strain. Using default strain. Warning: gnlti136478153 has no strain. Using default strain. Warning: gnlti136478154 has no strain. Using default strain. Warning: gnlti136478155 has no strain. Using default strain. Warning: gnlti136478156 has no strain. Using default strain. Warning: gnlti136478157 has no strain. Using default strain. Warning: gnlti136478158 has no strain. Using default strain. Warning: gnlti136478159 has no strain. Using default strain. Warning: gnlti136478160 has no strain. Using default strain. Warning: gnlti136478161 has no strain. Using default strain. Warning: gnlti136478162 has no strain. Using default strain. Warning: gnlti136478163 has no strain. Using default strain. Warning: gnlti136478164 has no strain. Using default strain. Warning: gnlti136478165 has no strain. Using default strain. Warning: gnlti136478166 has no strain. Using default strain. Warning: gnlti136478167 has no strain. Using default strain. Warning: gnlti136478168 has no strain. Using default strain. Warning: gnlti136478169 has no strain. Using default strain. Warning: gnlti136478170 has no strain. Using default strain. Warning: gnlti136478171 has no strain. Using default strain. Warning: gnlti136478172 has no strain. Using default strain. Warning: gnlti136478173 has no strain. Using default strain. Warning: gnlti136478174 has no strain. Using default strain. Warning: gnlti136478175 has no strain. Using default strain. Warning: gnlti136478176 has no strain. Using default strain. Warning: gnlti136478177 has no strain. Using default strain. Warning: gnlti136478178 has no strain. Using default strain. Warning: gnlti136478179 has no strain. Using default strain. Warning: gnlti136478180 has no strain. Using default strain. Warning: gnlti136478181 has no strain. Using default strain. Warning: gnlti136478182 has no strain. Using default strain. Warning: gnlti136478183 has no strain. Using default strain. Warning: gnlti136478184 has no strain. Using default strain. Warning: gnlti136478185 has no strain. Using default strain. Warning: gnlti136478186 has no strain. Using default strain. Warning: gnlti136478187 has no strain. Using default strain. Warning: gnlti136478188 has no strain. Using default strain. Warning: gnlti136478189 has no strain. Using default strain. Warning: gnlti136478190 has no strain. Using default strain. Warning: gnlti136478191 has no strain. Using default strain. Warning: gnlti136478192 has no strain. Using default strain. Warning: gnlti136478193 has no strain. Using default strain. Warning: gnlti136478194 has no strain. Using default strain. Warning: gnlti136478195 has no strain. Using default strain. Warning: gnlti136478196 has no strain. Using default strain. Warning: gnlti136478197 has no strain. Using default strain. Warning: gnlti136478198 has no strain. Using default strain. Warning: gnlti136478199 has no strain. Using default strain. Warning: gnlti136478200 has no strain. Using default strain. Warning: gnlti136478201 has no strain. Using default strain. Warning: gnlti136478202 has no strain. Using default strain. Warning: gnlti136478203 has no strain. Using default strain. Warning: gnlti136478204 has no strain. Using default strain. Warning: gnlti136478205 has no strain. Using default strain. Warning: gnlti136478206 has no strain. Using default strain. Warning: gnlti136478207 has no strain. Using default strain. Warning: gnlti136478208 has no strain. Using default strain. Warning: gnlti136478209 has no strain. Using default strain. Warning: gnlti136478210 has no strain. Using default strain. Warning: gnlti136478211 has no strain. Using default strain. Warning: gnlti136478212 has no strain. Using default strain. Warning: gnlti136478213 has no strain. Using default strain. Warning: gnlti136478214 has no strain. Using default strain. Warning: gnlti136478215 has no strain. Using default strain. Warning: gnlti136478216 has no strain. Using default strain. Warning: gnlti136478217 has no strain. Using default strain. Warning: gnlti136478218 has no strain. Using default strain. Warning: gnlti136478219 has no strain. Using default strain. Warning: gnlti136478220 has no strain. Using default strain. Warning: gnlti136478221 has no strain. Using default strain. Warning: gnlti136478222 has no strain. Using default strain. Warning: gnlti136478223 has no strain. Using default strain. Warning: gnlti136478224 has no strain. Using default strain. Warning: gnlti136478225 has no strain. Using default strain. Warning: gnlti136478226 has no strain. Using default strain. Warning: gnlti136478227 has no strain. Using default strain. Warning: gnlti136478228 has no strain. Using default strain. Warning: gnlti136478229 has no strain. Using default strain. Warning: gnlti136478230 has no strain. Using default strain. Warning: gnlti136478231 has no strain. Using default strain. Warning: gnlti136478232 has no strain. Using default strain. Warning: gnlti136478233 has no strain. Using default strain. Warning: gnlti136478234 has no strain. Using default strain. Warning: gnlti136478235 has no strain. Using default strain. Warning: gnlti136478236 has no strain. Using default strain. Warning: gnlti136478237 has no strain. Using default strain. Warning: gnlti136478238 has no strain. Using default strain. Warning: gnlti136478239 has no strain. Using default strain. Warning: gnlti136478240 has no strain. Using default strain. Warning: gnlti136478241 has no strain. Using default strain. Warning: gnlti136478242 has no strain. Using default strain. Warning: gnlti136478243 has no strain. Using default strain. Warning: gnlti136478244 has no strain. Using default strain. Warning: gnlti136478245 has no strain. Using default strain. Warning: gnlti136478246 has no strain. Using default strain. Warning: gnlti136478247 has no strain. Using default strain. Warning: gnlti136478248 has no strain. Using default strain. Warning: gnlti136478249 has no strain. Using default strain. Warning: gnlti136478250 has no strain. Using default strain. Warning: gnlti136478251 has no strain. Using default strain. Warning: gnlti136478252 has no strain. Using default strain. Warning: gnlti136478253 has no strain. Using default strain. Warning: gnlti136478254 has no strain. Using default strain. Warning: gnlti136478255 has no strain. Using default strain. Warning: gnlti136478256 has no strain. Using default strain. Warning: gnlti136478257 has no strain. Using default strain. Warning: gnlti136478258 has no strain. Using default strain. Warning: gnlti136478259 has no strain. Using default strain. Warning: gnlti136478260 has no strain. Using default strain. Warning: gnlti136478261 has no strain. Using default strain. Warning: gnlti136478262 has no strain. Using default strain. Warning: gnlti136478263 has no strain. Using default strain. Warning: gnlti136478264 has no strain. Using default strain. Warning: gnlti136478265 has no strain. Using default strain. Warning: gnlti136478266 has no strain. Using default strain. Warning: gnlti136478267 has no strain. Using default strain. Warning: gnlti136478268 has no strain. Using default strain. Warning: gnlti136478269 has no strain. Using default strain. Warning: gnlti136478270 has no strain. Using default strain. Warning: gnlti136478271 has no strain. Using default strain. Warning: gnlti136478272 has no strain. Using default strain. Warning: gnlti136478273 has no strain. Using default strain. Warning: gnlti136478274 has no strain. Using default strain. Warning: gnlti136478275 has no strain. Using default strain. Warning: gnlti136478276 has no strain. Using default strain. Warning: gnlti136478277 has no strain. Using default strain. Warning: gnlti136478278 has no strain. Using default strain. Warning: gnlti136478279 has no strain. Using default strain. Warning: gnlti136478280 has no strain. Using default strain. Warning: gnlti136478281 has no strain. Using default strain. Warning: gnlti136478282 has no strain. Using default strain. Warning: gnlti136478283 has no strain. Using default strain. Warning: gnlti136478284 has no strain. Using default strain. Warning: gnlti136478285 has no strain. Using default strain. Warning: gnlti136478286 has no strain. Using default strain. Warning: gnlti136478287 has no strain. Using default strain. Warning: gnlti136478288 has no strain. Using default strain. Warning: gnlti136478289 has no strain. Using default strain. Warning: gnlti136478290 has no strain. Using default strain. Warning: gnlti136478291 has no strain. Using default strain. Warning: gnlti136478292 has no strain. Using default strain. Warning: gnlti136478293 has no strain. Using default strain. Warning: gnlti136478294 has no strain. Using default strain. Warning: gnlti136478295 has no strain. Using default strain. Warning: gnlti136478296 has no strain. Using default strain. Warning: gnlti136478297 has no strain. Using default strain. Warning: gnlti136478298 has no strain. Using default strain. Warning: gnlti136478299 has no strain. Using default strain. Warning: gnlti136478300 has no strain. Using default strain. Warning: gnlti136478301 has no strain. Using default strain. Warning: gnlti136478302 has no strain. Using default strain. Warning: gnlti136478303 has no strain. Using default strain. Warning: gnlti136478304 has no strain. Using default strain. Warning: gnlti136478305 has no strain. Using default strain. Warning: gnlti136478306 has no strain. Using default strain. Warning: gnlti136478307 has no strain. Using default strain. Warning: gnlti136478308 has no strain. Using default strain. Warning: gnlti136478309 has no strain. Using default strain. Warning: gnlti136478310 has no strain. Using default strain. Warning: gnlti136478311 has no strain. Using default strain. Warning: gnlti136478312 has no strain. Using default strain. Warning: gnlti136478313 has no strain. Using default strain. Warning: gnlti136478314 has no strain. Using default strain. Warning: gnlti136478315 has no strain. Using default strain. Warning: gnlti136478316 has no strain. Using default strain. Warning: gnlti136478317 has no strain. Using default strain. Warning: gnlti136478318 has no strain. Using default strain. Warning: gnlti136478319 has no strain. Using default strain. Warning: gnlti136478320 has no strain. Using default strain. Warning: gnlti136478321 has no strain. Using default strain. Warning: gnlti136478322 has no strain. Using default strain. Warning: gnlti136478323 has no strain. Using default strain. Warning: gnlti136478324 has no strain. Using default strain. Warning: gnlti136478325 has no strain. Using default strain. Warning: gnlti136478326 has no strain. Using default strain. Warning: gnlti136478327 has no strain. Using default strain. Warning: gnlti136478328 has no strain. Using default strain. Warning: gnlti136478329 has no strain. Using default strain. Warning: gnlti136478330 has no strain. Using default strain. Warning: gnlti136478331 has no strain. Using default strain. Warning: gnlti136478332 has no strain. Using default strain. Warning: gnlti136478333 has no strain. Using default strain. Warning: gnlti136478334 has no strain. Using default strain. Warning: gnlti136478335 has no strain. Using default strain. Warning: gnlti136478336 has no strain. Using default strain. Warning: gnlti136478337 has no strain. Using default strain. Warning: gnlti136478338 has no strain. Using default strain. Warning: gnlti136478339 has no strain. Using default strain. Warning: gnlti136478340 has no strain. Using default strain. Warning: gnlti136478341 has no strain. Using default strain. Warning: gnlti136478342 has no strain. Using default strain. Warning: gnlti136478343 has no strain. Using default strain. Warning: gnlti136478344 has no strain. Using default strain. Warning: gnlti136478345 has no strain. Using default strain. Warning: gnlti136478346 has no strain. Using default strain. Warning: gnlti136478347 has no strain. Using default strain. Warning: gnlti136478348 has no strain. Using default strain. Warning: gnlti136478349 has no strain. Using default strain. Warning: gnlti136478350 has no strain. Using default strain. Warning: gnlti136478351 has no strain. Using default strain. Warning: gnlti136478352 has no strain. Using default strain. Warning: gnlti136478353 has no strain. Using default strain. Warning: gnlti136478354 has no strain. Using default strain. Warning: gnlti136478355 has no strain. Using default strain. Warning: gnlti136478356 has no strain. Using default strain. Warning: gnlti136478357 has no strain. Using default strain. Warning: gnlti136478358 has no strain. Using default strain. Warning: gnlti136478359 has no strain. Using default strain. Warning: gnlti136478360 has no strain. Using default strain. Warning: gnlti136478361 has no strain. Using default strain. Warning: gnlti136478362 has no strain. Using default strain. Warning: gnlti136478363 has no strain. Using default strain. Warning: gnlti136478364 has no strain. Using default strain. Warning: gnlti136478365 has no strain. Using default strain. Warning: gnlti136478366 has no strain. Using default strain. Warning: gnlti136478367 has no strain. Using default strain. Warning: gnlti136478368 has no strain. Using default strain. Warning: gnlti136478369 has no strain. Using default strain. Warning: gnlti136478370 has no strain. Using default strain. Warning: gnlti136478371 has no strain. Using default strain. Warning: gnlti136478372 has no strain. Using default strain. Warning: gnlti136478373 has no strain. Using default strain. Warning: gnlti136478374 has no strain. Using default strain. Warning: gnlti136478375 has no strain. Using default strain. Warning: gnlti136478376 has no strain. Using default strain. Warning: gnlti136478377 has no strain. Using default strain. Warning: gnlti136478378 has no strain. Using default strain. Warning: gnlti136478379 has no strain. Using default strain. Warning: gnlti136478380 has no strain. Using default strain. Warning: gnlti136478381 has no strain. Using default strain. Warning: gnlti136478382 has no strain. Using default strain. Warning: gnlti136478383 has no strain. Using default strain. Warning: gnlti136478384 has no strain. Using default strain. Warning: gnlti136478385 has no strain. Using default strain. Warning: gnlti136478386 has no strain. Using default strain. Warning: gnlti136478387 has no strain. Using default strain. Warning: gnlti136478388 has no strain. Using default strain. Warning: gnlti136478389 has no strain. Using default strain. Warning: gnlti136478390 has no strain. Using default strain. Warning: gnlti136478391 has no strain. Using default strain. Warning: gnlti136478392 has no strain. Using default strain. Warning: gnlti136478393 has no strain. Using default strain. Warning: gnlti136478394 has no strain. Using default strain. Warning: gnlti136478395 has no strain. Using default strain. Warning: gnlti136478396 has no strain. Using default strain. Warning: gnlti136478397 has no strain. Using default strain. Warning: gnlti136478398 has no strain. Using default strain. Warning: gnlti136478399 has no strain. Using default strain. Warning: gnlti136478400 has no strain. Using default strain. Warning: gnlti136478401 has no strain. Using default strain. Warning: gnlti136478402 has no strain. Using default strain. Warning: gnlti136478403 has no strain. Using default strain. Warning: gnlti136478404 has no strain. Using default strain. Warning: gnlti136478405 has no strain. Using default strain. Warning: gnlti136478406 has no strain. Using default strain. Warning: gnlti136478407 has no strain. Using default strain. Warning: gnlti136478408 has no strain. Using default strain. Warning: gnlti136478409 has no strain. Using default strain. Warning: gnlti136478410 has no strain. Using default strain. Warning: gnlti136478411 has no strain. Using default strain. Warning: gnlti136478412 has no strain. Using default strain. Warning: gnlti136478413 has no strain. Using default strain. Warning: gnlti136478414 has no strain. Using default strain. Warning: gnlti136478415 has no strain. Using default strain. Warning: gnlti136478416 has no strain. Using default strain. Warning: gnlti136478417 has no strain. Using default strain. Warning: gnlti136478418 has no strain. Using default strain. Warning: gnlti136478419 has no strain. Using default strain. Warning: gnlti136478420 has no strain. Using default strain. Warning: gnlti136478421 has no strain. Using default strain. Warning: gnlti136478422 has no strain. Using default strain. Warning: gnlti136478423 has no strain. Using default strain. Warning: gnlti136478424 has no strain. Using default strain. Warning: gnlti136478425 has no strain. Using default strain. Warning: gnlti136478426 has no strain. Using default strain. Warning: gnlti136478427 has no strain. Using default strain. Warning: gnlti136478428 has no strain. Using default strain. Warning: gnlti136478429 has no strain. Using default strain. Warning: gnlti136478430 has no strain. Using default strain. Warning: gnlti136478431 has no strain. Using default strain. Warning: gnlti136478432 has no strain. Using default strain. Warning: gnlti136478433 has no strain. Using default strain. Warning: gnlti136478434 has no strain. Using default strain. Warning: gnlti136478435 has no strain. Using default strain. Warning: gnlti136478436 has no strain. Using default strain. Warning: gnlti136478437 has no strain. Using default strain. Warning: gnlti136478438 has no strain. Using default strain. Warning: gnlti136478439 has no strain. Using default strain. Warning: gnlti136478440 has no strain. Using default strain. Warning: gnlti136478441 has no strain. Using default strain. Warning: gnlti136478442 has no strain. Using default strain. Warning: gnlti136478443 has no strain. Using default strain. Warning: gnlti136478444 has no strain. Using default strain. Warning: gnlti136478445 has no strain. Using default strain. Warning: gnlti136478446 has no strain. Using default strain. Warning: gnlti136478447 has no strain. Using default strain. Warning: gnlti136478448 has no strain. Using default strain. Warning: gnlti136478449 has no strain. Using default strain. Warning: gnlti136478450 has no strain. Using default strain. Warning: gnlti136478451 has no strain. Using default strain. Warning: gnlti136478452 has no strain. Using default strain. Warning: gnlti136478453 has no strain. Using default strain. Warning: gnlti136478454 has no strain. Using default strain. Warning: gnlti136478455 has no strain. Using default strain. Warning: gnlti136478456 has no strain. Using default strain. Warning: gnlti136478457 has no strain. Using default strain. Warning: gnlti136478458 has no strain. Using default strain. Warning: gnlti136478459 has no strain. Using default strain. Warning: gnlti136478460 has no strain. Using default strain. Warning: gnlti136478461 has no strain. Using default strain. Warning: gnlti136478462 has no strain. Using default strain. Warning: gnlti136478463 has no strain. Using default strain. Warning: gnlti136478464 has no strain. Using default strain. Warning: gnlti136478465 has no strain. Using default strain. Warning: gnlti136478466 has no strain. Using default strain. Warning: gnlti136478467 has no strain. Using default strain. Warning: gnlti136478468 has no strain. Using default strain. Warning: gnlti136478469 has no strain. Using default strain. Warning: gnlti136478470 has no strain. Using default strain. Warning: gnlti136478471 has no strain. Using default strain. Warning: gnlti136478472 has no strain. Using default strain. Warning: gnlti136478473 has no strain. Using default strain. Warning: gnlti136478474 has no strain. Using default strain. Warning: gnlti136478475 has no strain. Using default strain. Warning: gnlti136478476 has no strain. Using default strain. Warning: gnlti136478477 has no strain. Using default strain. Warning: gnlti136478478 has no strain. Using default strain. Warning: gnlti136478479 has no strain. Using default strain. Warning: gnlti136478480 has no strain. Using default strain. Warning: gnlti136478481 has no strain. Using default strain. Warning: gnlti136478482 has no strain. Using default strain. Warning: gnlti136478483 has no strain. Using default strain. Warning: gnlti136478484 has no strain. Using default strain. Warning: gnlti136478485 has no strain. Using default strain. Warning: gnlti136478486 has no strain. Using default strain. Warning: gnlti136478487 has no strain. Using default strain. Warning: gnlti136478488 has no strain. Using default strain. Warning: gnlti136478489 has no strain. Using default strain. Warning: gnlti136478490 has no strain. Using default strain. Warning: gnlti136478491 has no strain. Using default strain. Warning: gnlti136478492 has no strain. Using default strain. Warning: gnlti136478493 has no strain. Using default strain. Warning: gnlti136478494 has no strain. Using default strain. Warning: gnlti136478495 has no strain. Using default strain. Warning: gnlti136478496 has no strain. Using default strain. Warning: gnlti136478497 has no strain. Using default strain. Warning: gnlti136478498 has no strain. Using default strain. Warning: gnlti136478499 has no strain. Using default strain. Warning: gnlti136478500 has no strain. Using default strain. Warning: gnlti136478501 has no strain. Using default strain. Warning: gnlti136478502 has no strain. Using default strain. Warning: gnlti136478503 has no strain. Using default strain. Warning: gnlti136478504 has no strain. Using default strain. Warning: gnlti136478505 has no strain. Using default strain. Warning: gnlti136478506 has no strain. Using default strain. Warning: gnlti136478507 has no strain. Using default strain. Warning: gnlti136478508 has no strain. Using default strain. Warning: gnlti136478509 has no strain. Using default strain. Warning: gnlti136478510 has no strain. Using default strain. Warning: gnlti136478511 has no strain. Using default strain. Warning: gnlti136478512 has no strain. Using default strain. Warning: gnlti136478513 has no strain. Using default strain. Warning: gnlti136478514 has no strain. Using default strain. Warning: gnlti136478515 has no strain. Using default strain. Warning: gnlti136478516 has no strain. Using default strain. Warning: gnlti136478517 has no strain. Using default strain. Warning: gnlti136478518 has no strain. Using default strain. Warning: gnlti136478519 has no strain. Using default strain. Warning: gnlti136478520 has no strain. Using default strain. Warning: gnlti136478521 has no strain. Using default strain. Warning: gnlti136478522 has no strain. Using default strain. Warning: gnlti136478523 has no strain. Using default strain. Warning: gnlti136478524 has no strain. Using default strain. Warning: gnlti136478525 has no strain. Using default strain. Warning: gnlti136478526 has no strain. Using default strain. Warning: gnlti136478527 has no strain. Using default strain. Warning: gnlti136478528 has no strain. Using default strain. Warning: gnlti136478529 has no strain. Using default strain. Warning: gnlti136478530 has no strain. Using default strain. Warning: gnlti136478531 has no strain. Using default strain. Warning: gnlti136478532 has no strain. Using default strain. Warning: gnlti136478533 has no strain. Using default strain. Warning: gnlti136478534 has no strain. Using default strain. Warning: gnlti136478535 has no strain. Using default strain. Warning: gnlti136478536 has no strain. Using default strain. Warning: gnlti136478537 has no strain. Using default strain. Warning: gnlti136478538 has no strain. Using default strain. Warning: gnlti136478539 has no strain. Using default strain. Warning: gnlti136478540 has no strain. Using default strain. Warning: gnlti136478541 has no strain. Using default strain. Warning: gnlti136478542 has no strain. Using default strain. Warning: gnlti136478543 has no strain. Using default strain. Warning: gnlti136478544 has no strain. Using default strain. Warning: gnlti136478545 has no strain. Using default strain. Warning: gnlti136478546 has no strain. Using default strain. Warning: gnlti136478547 has no strain. Using default strain. Warning: gnlti136478548 has no strain. Using default strain. Warning: gnlti136478549 has no strain. Using default strain. Warning: gnlti136478550 has no strain. Using default strain. Warning: gnlti136478551 has no strain. Using default strain. Warning: gnlti136478552 has no strain. Using default strain. Warning: gnlti136478553 has no strain. Using default strain. Warning: gnlti136478554 has no strain. Using default strain. Warning: gnlti136478555 has no strain. Using default strain. Warning: gnlti136478556 has no strain. Using default strain. Warning: gnlti136478557 has no strain. Using default strain. Warning: gnlti136478558 has no strain. Using default strain. Warning: gnlti136478559 has no strain. Using default strain. Warning: gnlti136478560 has no strain. Using default strain. Warning: gnlti136478561 has no strain. Using default strain. Warning: gnlti136478562 has no strain. Using default strain. Warning: gnlti136478563 has no strain. Using default strain. Warning: gnlti136478564 has no strain. Using default strain. Warning: gnlti136478565 has no strain. Using default strain. Warning: gnlti136478566 has no strain. Using default strain. Warning: gnlti136478567 has no strain. Using default strain. Warning: gnlti136478568 has no strain. Using default strain. Warning: gnlti136478569 has no strain. Using default strain. Warning: gnlti136478570 has no strain. Using default strain. Warning: gnlti136478571 has no strain. Using default strain. Warning: gnlti136478572 has no strain. Using default strain. Warning: gnlti136478573 has no strain. Using default strain. Warning: gnlti136478574 has no strain. Using default strain. Warning: gnlti136478575 has no strain. Using default strain. Warning: gnlti136478576 has no strain. Using default strain. Warning: gnlti136478577 has no strain. Using default strain. Warning: gnlti136478578 has no strain. Using default strain. Warning: gnlti136478579 has no strain. Using default strain. Warning: gnlti136478580 has no strain. Using default strain. Warning: gnlti136478581 has no strain. Using default strain. Warning: gnlti136478582 has no strain. Using default strain. Warning: gnlti136478583 has no strain. Using default strain. Warning: gnlti136478584 has no strain. Using default strain. Warning: gnlti136478585 has no strain. Using default strain. Warning: gnlti136478586 has no strain. Using default strain. Warning: gnlti136478587 has no strain. Using default strain. Warning: gnlti136478588 has no strain. Using default strain. Warning: gnlti136478589 has no strain. Using default strain. Warning: gnlti136478590 has no strain. Using default strain. Warning: gnlti136478591 has no strain. Using default strain. Warning: gnlti136478592 has no strain. Using default strain. Warning: gnlti136478593 has no strain. Using default strain. Warning: gnlti136478594 has no strain. Using default strain. Warning: gnlti136478595 has no strain. Using default strain. Warning: gnlti136478596 has no strain. Using default strain. Warning: gnlti136478597 has no strain. Using default strain. Warning: gnlti136478598 has no strain. Using default strain. Warning: gnlti136478599 has no strain. Using default strain. Warning: gnlti136478600 has no strain. Using default strain. Warning: gnlti136478601 has no strain. Using default strain. Warning: gnlti136478602 has no strain. Using default strain. Warning: gnlti136478603 has no strain. Using default strain. Warning: gnlti136478604 has no strain. Using default strain. Warning: gnlti136478605 has no strain. Using default strain. Warning: gnlti136478606 has no strain. Using default strain. Warning: gnlti136478607 has no strain. Using default strain. Warning: gnlti136478608 has no strain. Using default strain. Warning: gnlti136478609 has no strain. Using default strain. Warning: gnlti136478610 has no strain. Using default strain. Warning: gnlti136478611 has no strain. Using default strain. Warning: gnlti136478612 has no strain. Using default strain. Warning: gnlti136478613 has no strain. Using default strain. Warning: gnlti136478614 has no strain. Using default strain. Warning: gnlti136478615 has no strain. Using default strain. Warning: gnlti136478616 has no strain. Using default strain. Warning: gnlti136478617 has no strain. Using default strain. Warning: gnlti136478618 has no strain. Using default strain. Warning: gnlti136478619 has no strain. Using default strain. Warning: gnlti136478620 has no strain. Using default strain. Warning: gnlti136478621 has no strain. Using default strain. Warning: gnlti136478622 has no strain. Using default strain. Warning: gnlti136478623 has no strain. Using default strain. Warning: gnlti136478624 has no strain. Using default strain. Warning: gnlti136478625 has no strain. Using default strain. Warning: gnlti136478626 has no strain. Using default strain. Warning: gnlti136478627 has no strain. Using default strain. Warning: gnlti136478628 has no strain. Using default strain. Warning: gnlti136478629 has no strain. Using default strain. Warning: gnlti136478630 has no strain. Using default strain. Warning: gnlti136478631 has no strain. Using default strain. Warning: gnlti136478632 has no strain. Using default strain. Warning: gnlti136478633 has no strain. Using default strain. Warning: gnlti136478634 has no strain. Using default strain. Warning: gnlti136478635 has no strain. Using default strain. Warning: gnlti136478636 has no strain. Using default strain. Warning: gnlti136478637 has no strain. Using default strain. Warning: gnlti136478638 has no strain. Using default strain. Warning: gnlti136478639 has no strain. Using default strain. Warning: gnlti136478640 has no strain. Using default strain. Warning: gnlti136478641 has no strain. Using default strain. Warning: gnlti136478642 has no strain. Using default strain. Warning: gnlti136478643 has no strain. Using default strain. Warning: gnlti136478644 has no strain. Using default strain. Warning: gnlti136478645 has no strain. Using default strain. Warning: gnlti136478646 has no strain. Using default strain. Warning: gnlti136478647 has no strain. Using default strain. Warning: gnlti136478648 has no strain. Using default strain. Warning: gnlti136478649 has no strain. Using default strain. Warning: gnlti136478650 has no strain. Using default strain. Warning: gnlti136478651 has no strain. Using default strain. Warning: gnlti136478652 has no strain. Using default strain. Warning: gnlti136478653 has no strain. Using default strain. Warning: gnlti136478654 has no strain. Using default strain. Warning: gnlti136478655 has no strain. Using default strain. Warning: gnlti136478656 has no strain. Using default strain. Warning: gnlti136478657 has no strain. Using default strain. Warning: gnlti136478658 has no strain. Using default strain. Warning: gnlti136478659 has no strain. Using default strain. Warning: gnlti136478660 has no strain. Using default strain. Warning: gnlti136478661 has no strain. Using default strain. Warning: gnlti136478662 has no strain. Using default strain. Warning: gnlti136478663 has no strain. Using default strain. Warning: gnlti136478664 has no strain. Using default strain. Warning: gnlti136478665 has no strain. Using default strain. Warning: gnlti136478666 has no strain. Using default strain. Warning: gnlti136478667 has no strain. Using default strain. Warning: gnlti136478668 has no strain. Using default strain. Warning: gnlti136478669 has no strain. Using default strain. Warning: gnlti136478670 has no strain. Using default strain. Warning: gnlti136478671 has no strain. Using default strain. Warning: gnlti136478672 has no strain. Using default strain. Warning: gnlti136478673 has no strain. Using default strain. Warning: gnlti136478674 has no strain. Using default strain. Warning: gnlti136478675 has no strain. Using default strain. Warning: gnlti136478676 has no strain. Using default strain. Warning: gnlti136478677 has no strain. Using default strain. Warning: gnlti136478678 has no strain. Using default strain. Warning: gnlti136478679 has no strain. Using default strain. Warning: gnlti136478680 has no strain. Using default strain. Warning: gnlti136478681 has no strain. Using default strain. Warning: gnlti136478682 has no strain. Using default strain. Warning: gnlti136478683 has no strain. Using default strain. Warning: gnlti136478684 has no strain. Using default strain. Warning: gnlti136478685 has no strain. Using default strain. Warning: gnlti136478686 has no strain. Using default strain. Warning: gnlti136478687 has no strain. Using default strain. Warning: gnlti136478688 has no strain. Using default strain. Warning: gnlti136478689 has no strain. Using default strain. Warning: gnlti136478690 has no strain. Using default strain. Warning: gnlti136478691 has no strain. Using default strain. Warning: gnlti136478692 has no strain. Using default strain. Warning: gnlti136478693 has no strain. Using default strain. Warning: gnlti136478694 has no strain. Using default strain. Warning: gnlti136478695 has no strain. Using default strain. Warning: gnlti136478696 has no strain. Using default strain. Warning: gnlti136478697 has no strain. Using default strain. Warning: gnlti136478698 has no strain. Using default strain. Warning: gnlti136478699 has no strain. Using default strain. Warning: gnlti136478700 has no strain. Using default strain. Warning: gnlti136478701 has no strain. Using default strain. Warning: gnlti136478702 has no strain. Using default strain. Warning: gnlti136478703 has no strain. Using default strain. Warning: gnlti136478704 has no strain. Using default strain. Warning: gnlti136478705 has no strain. Using default strain. Warning: gnlti136478706 has no strain. Using default strain. Warning: gnlti136478707 has no strain. Using default strain. Warning: gnlti136478708 has no strain. Using default strain. Warning: gnlti136478709 has no strain. Using default strain. Warning: gnlti136478710 has no strain. Using default strain. Warning: gnlti136478711 has no strain. Using default strain. Warning: gnlti136478712 has no strain. Using default strain. Warning: gnlti136478713 has no strain. Using default strain. Warning: gnlti136478714 has no strain. Using default strain. Warning: gnlti136478715 has no strain. Using default strain. Warning: gnlti136478716 has no strain. Using default strain. Warning: gnlti136478717 has no strain. Using default strain. Warning: gnlti136478718 has no strain. Using default strain. Warning: gnlti136478719 has no strain. Using default strain. Warning: gnlti136478720 has no strain. Using default strain. Warning: gnlti136478721 has no strain. Using default strain. Warning: gnlti136478722 has no strain. Using default strain. Warning: gnlti136478723 has no strain. Using default strain. Warning: gnlti136478724 has no strain. Using default strain. Warning: gnlti136478725 has no strain. Using default strain. Warning: gnlti136478726 has no strain. Using default strain. Warning: gnlti136478727 has no strain. Using default strain. Warning: gnlti136478728 has no strain. Using default strain. Warning: gnlti136478729 has no strain. Using default strain. Warning: gnlti136478730 has no strain. Using default strain. Warning: gnlti136478731 has no strain. Using default strain. Warning: gnlti136478732 has no strain. Using default strain. Warning: gnlti136478733 has no strain. Using default strain. Warning: gnlti136478734 has no strain. Using default strain. Warning: gnlti136478735 has no strain. Using default strain. Warning: gnlti136478736 has no strain. Using default strain. Warning: gnlti136478737 has no strain. Using default strain. Warning: gnlti136478738 has no strain. Using default strain. Warning: gnlti136478739 has no strain. Using default strain. Warning: gnlti136478740 has no strain. Using default strain. Warning: gnlti136478741 has no strain. Using default strain. Warning: gnlti136478742 has no strain. Using default strain. Warning: gnlti136478743 has no strain. Using default strain. Warning: gnlti136478744 has no strain. Using default strain. Warning: gnlti136478745 has no strain. Using default strain. Warning: gnlti136478746 has no strain. Using default strain. Warning: gnlti136478747 has no strain. Using default strain. Warning: gnlti136478748 has no strain. Using default strain. Warning: gnlti136478749 has no strain. Using default strain. Warning: gnlti136478750 has no strain. Using default strain. Warning: gnlti136478751 has no strain. Using default strain. Warning: gnlti136478752 has no strain. Using default strain. Warning: gnlti136478753 has no strain. Using default strain. Warning: gnlti136478754 has no strain. Using default strain. Warning: gnlti136478755 has no strain. Using default strain. Warning: gnlti136478756 has no strain. Using default strain. Warning: gnlti136478757 has no strain. Using default strain. Warning: gnlti136478758 has no strain. Using default strain. Warning: gnlti136478759 has no strain. Using default strain. Warning: gnlti136478760 has no strain. Using default strain. Warning: gnlti136478761 has no strain. Using default strain. Warning: gnlti136478762 has no strain. Using default strain. Warning: gnlti136478763 has no strain. Using default strain. Warning: gnlti136478764 has no strain. Using default strain. Warning: gnlti136478765 has no strain. Using default strain. Warning: gnlti136478766 has no strain. Using default strain. Warning: gnlti136478767 has no strain. Using default strain. Warning: gnlti136478768 has no strain. Using default strain. Warning: gnlti136478769 has no strain. Using default strain. Warning: gnlti136478770 has no strain. Using default strain. Warning: gnlti136478771 has no strain. Using default strain. Warning: gnlti136478772 has no strain. Using default strain. Warning: gnlti136478773 has no strain. Using default strain. Warning: gnlti136478774 has no strain. Using default strain. Warning: gnlti136478775 has no strain. Using default strain. Warning: gnlti136478776 has no strain. Using default strain. Warning: gnlti136478777 has no strain. Using default strain. Warning: gnlti136478778 has no strain. Using default strain. Warning: gnlti136478779 has no strain. Using default strain. Warning: gnlti136478780 has no strain. Using default strain. Warning: gnlti136478781 has no strain. Using default strain. Warning: gnlti136478782 has no strain. Using default strain. Warning: gnlti136478783 has no strain. Using default strain. Warning: gnlti136478784 has no strain. Using default strain. Warning: gnlti136478785 has no strain. Using default strain. Warning: gnlti136478786 has no strain. Using default strain. Warning: gnlti136478787 has no strain. Using default strain. Warning: gnlti136478788 has no strain. Using default strain. Warning: gnlti136478789 has no strain. Using default strain. Warning: gnlti136478790 has no strain. Using default strain. Warning: gnlti136478791 has no strain. Using default strain. Warning: gnlti136478792 has no strain. Using default strain. Warning: gnlti136478793 has no strain. Using default strain. Warning: gnlti136478794 has no strain. Using default strain. Warning: gnlti136478795 has no strain. Using default strain. Warning: gnlti136478796 has no strain. Using default strain. Warning: gnlti136478797 has no strain. Using default strain. Warning: gnlti136478798 has no strain. Using default strain. Warning: gnlti136478799 has no strain. Using default strain. Warning: gnlti136478800 has no strain. Using default strain. Warning: gnlti136478801 has no strain. Using default strain. Warning: gnlti136478802 has no strain. Using default strain. Warning: gnlti136478803 has no strain. Using default strain. Warning: gnlti136478804 has no strain. Using default strain. Warning: gnlti136478805 has no strain. Using default strain. Warning: gnlti136478806 has no strain. Using default strain. Warning: gnlti136478807 has no strain. Using default strain. Warning: gnlti136478808 has no strain. Using default strain. Warning: gnlti136478809 has no strain. Using default strain. Warning: gnlti136478810 has no strain. Using default strain. Warning: gnlti136478811 has no strain. Using default strain. Warning: gnlti136478812 has no strain. Using default strain. Warning: gnlti136478813 has no strain. Using default strain. Warning: gnlti136478814 has no strain. Using default strain. Warning: gnlti136478815 has no strain. Using default strain. Warning: gnlti136478816 has no strain. Using default strain. Warning: gnlti136478817 has no strain. Using default strain. Warning: gnlti136478818 has no strain. Using default strain. Warning: gnlti136478819 has no strain. Using default strain. Warning: gnlti136478820 has no strain. Using default strain. Warning: gnlti136478821 has no strain. Using default strain. Warning: gnlti136478822 has no strain. Using default strain. Warning: gnlti136478823 has no strain. Using default strain. Warning: gnlti136478824 has no strain. Using default strain. Warning: gnlti136478825 has no strain. Using default strain. Warning: gnlti136478826 has no strain. Using default strain. Warning: gnlti136478827 has no strain. Using default strain. Warning: gnlti136478828 has no strain. Using default strain. Warning: gnlti136478829 has no strain. Using default strain. Warning: gnlti136478830 has no strain. Using default strain. Warning: gnlti136478831 has no strain. Using default strain. Warning: gnlti136478832 has no strain. Using default strain. Warning: gnlti136478833 has no strain. Using default strain. Warning: gnlti136478834 has no strain. Using default strain. Warning: gnlti136478835 has no strain. Using default strain. Warning: gnlti136478836 has no strain. Using default strain. Warning: gnlti136478837 has no strain. Using default strain. Warning: gnlti136478838 has no strain. Using default strain. Warning: gnlti136478839 has no strain. Using default strain. Warning: gnlti136478840 has no strain. Using default strain. Warning: gnlti136478841 has no strain. Using default strain. Warning: gnlti136478842 has no strain. Using default strain. Warning: gnlti136478843 has no strain. Using default strain. Warning: gnlti136478844 has no strain. Using default strain. Warning: gnlti136478845 has no strain. Using default strain. Warning: gnlti136478846 has no strain. Using default strain. Warning: gnlti136478847 has no strain. Using default strain. Warning: gnlti136478848 has no strain. Using default strain. Warning: gnlti136478849 has no strain. Using default strain. Warning: gnlti136478850 has no strain. Using default strain. Warning: gnlti136478851 has no strain. Using default strain. Warning: gnlti136478852 has no strain. Using default strain. Warning: gnlti136478853 has no strain. Using default strain. Warning: gnlti136478854 has no strain. Using default strain. Warning: gnlti136478855 has no strain. Using default strain. Warning: gnlti136478856 has no strain. Using default strain. Warning: gnlti136478857 has no strain. Using default strain. Warning: gnlti136478858 has no strain. Using default strain. Warning: gnlti136478859 has no strain. Using default strain. Warning: gnlti136478860 has no strain. Using default strain. Warning: gnlti136478861 has no strain. Using default strain. Warning: gnlti136478862 has no strain. Using default strain. Warning: gnlti136478863 has no strain. Using default strain. Warning: gnlti136478864 has no strain. Using default strain. Warning: gnlti136478865 has no strain. Using default strain. Warning: gnlti136478866 has no strain. Using default strain. Warning: gnlti136478867 has no strain. Using default strain. Warning: gnlti136478868 has no strain. Using default strain. Warning: gnlti136478869 has no strain. Using default strain. Warning: gnlti136478870 has no strain. Using default strain. Warning: gnlti136478871 has no strain. Using default strain. Warning: gnlti136478872 has no strain. Using default strain. Warning: gnlti136478873 has no strain. Using default strain. Warning: gnlti136478874 has no strain. Using default strain. Warning: gnlti136478875 has no strain. Using default strain. Warning: gnlti136478876 has no strain. Using default strain. Warning: gnlti136478877 has no strain. Using default strain. Warning: gnlti136478878 has no strain. Using default strain. Warning: gnlti136478879 has no strain. Using default strain. Warning: gnlti136478880 has no strain. Using default strain. Warning: gnlti136478881 has no strain. Using default strain. Warning: gnlti136478882 has no strain. Using default strain. Warning: gnlti136478883 has no strain. Using default strain. Warning: gnlti136478884 has no strain. Using default strain. Warning: gnlti136478885 has no strain. Using default strain. Warning: gnlti136478886 has no strain. Using default strain. Warning: gnlti136478887 has no strain. Using default strain. Warning: gnlti136478888 has no strain. Using default strain. Warning: gnlti136478889 has no strain. Using default strain. Warning: gnlti136478890 has no strain. Using default strain. Warning: gnlti136478891 has no strain. Using default strain. Warning: gnlti136478892 has no strain. Using default strain. Warning: gnlti136478893 has no strain. Using default strain. Warning: gnlti136478894 has no strain. Using default strain. Warning: gnlti136478895 has no strain. Using default strain. Warning: gnlti136478896 has no strain. Using default strain. Warning: gnlti136478897 has no strain. Using default strain. Warning: gnlti136478898 has no strain. Using default strain. Warning: gnlti136478899 has no strain. Using default strain. Warning: gnlti136478900 has no strain. Using default strain. Warning: gnlti136478901 has no strain. Using default strain. Warning: gnlti136478902 has no strain. Using default strain. Warning: gnlti136478903 has no strain. Using default strain. Warning: gnlti136478904 has no strain. Using default strain. Warning: gnlti136478905 has no strain. Using default strain. Warning: gnlti136478906 has no strain. Using default strain. Warning: gnlti136478907 has no strain. Using default strain. Warning: gnlti136478908 has no strain. Using default strain. Warning: gnlti136478909 has no strain. Using default strain. Warning: gnlti136478910 has no strain. Using default strain. Warning: gnlti136478911 has no strain. Using default strain. Warning: gnlti136478912 has no strain. Using default strain. Warning: gnlti136478913 has no strain. Using default strain. Warning: gnlti136478914 has no strain. Using default strain. Warning: gnlti136478915 has no strain. Using default strain. Warning: gnlti136478916 has no strain. Using default strain. Warning: gnlti136478917 has no strain. Using default strain. Warning: gnlti136478918 has no strain. Using default strain. Warning: gnlti136478919 has no strain. Using default strain. Warning: gnlti136478920 has no strain. Using default strain. Warning: gnlti136478921 has no strain. Using default strain. Warning: gnlti136478922 has no strain. Using default strain. Warning: gnlti136478923 has no strain. Using default strain. Warning: gnlti136478924 has no strain. Using default strain. Warning: gnlti136478925 has no strain. Using default strain. Warning: gnlti136478926 has no strain. Using default strain. Warning: gnlti136478927 has no strain. Using default strain. Warning: gnlti136478928 has no strain. Using default strain. Warning: gnlti136478929 has no strain. Using default strain. Warning: gnlti136478930 has no strain. Using default strain. Warning: gnlti136478931 has no strain. Using default strain. Warning: gnlti136478932 has no strain. Using default strain. Warning: gnlti136478933 has no strain. Using default strain. Warning: gnlti136478934 has no strain. Using default strain. Warning: gnlti136478935 has no strain. Using default strain. Warning: gnlti136478936 has no strain. Using default strain. Warning: gnlti136478937 has no strain. Using default strain. Warning: gnlti136478938 has no strain. Using default strain. Warning: gnlti136478939 has no strain. Using default strain. Warning: gnlti136478940 has no strain. Using default strain. Warning: gnlti136478941 has no strain. Using default strain. Warning: gnlti136478942 has no strain. Using default strain. Warning: gnlti136478943 has no strain. Using default strain. Warning: gnlti136478944 has no strain. Using default strain. Warning: gnlti136478945 has no strain. Using default strain. Warning: gnlti136478946 has no strain. Using default strain. Warning: gnlti136478947 has no strain. Using default strain. Warning: gnlti136478948 has no strain. Using default strain. Warning: gnlti136478949 has no strain. Using default strain. Warning: gnlti136478950 has no strain. Using default strain. Warning: gnlti136478951 has no strain. Using default strain. Warning: gnlti136478952 has no strain. Using default strain. Warning: gnlti136478953 has no strain. Using default strain. Warning: gnlti136478954 has no strain. Using default strain. Warning: gnlti136478955 has no strain. Using default strain. Warning: gnlti136478956 has no strain. Using default strain. Warning: gnlti136478957 has no strain. Using default strain. Warning: gnlti136478958 has no strain. Using default strain. Warning: gnlti136478959 has no strain. Using default strain. Warning: gnlti136478960 has no strain. Using default strain. Warning: gnlti136478961 has no strain. Using default strain. Warning: gnlti136478962 has no strain. Using default strain. Warning: gnlti136478963 has no strain. Using default strain. Warning: gnlti136478964 has no strain. Using default strain. Warning: gnlti136478965 has no strain. Using default strain. Warning: gnlti136478966 has no strain. Using default strain. Warning: gnlti136478967 has no strain. Using default strain. Warning: gnlti136478968 has no strain. Using default strain. Warning: gnlti136478969 has no strain. Using default strain. Warning: gnlti136478970 has no strain. Using default strain. Warning: gnlti136478971 has no strain. Using default strain. Warning: gnlti136478972 has no strain. Using default strain. Warning: gnlti136478973 has no strain. Using default strain. Warning: gnlti136478974 has no strain. Using default strain. Warning: gnlti136478975 has no strain. Using default strain. Warning: gnlti136478976 has no strain. Using default strain. Warning: gnlti136478977 has no strain. Using default strain. Warning: gnlti136478978 has no strain. Using default strain. Warning: gnlti136478979 has no strain. Using default strain. Warning: gnlti136478980 has no strain. Using default strain. Warning: gnlti136478981 has no strain. Using default strain. Warning: gnlti136478982 has no strain. Using default strain. Warning: gnlti136478983 has no strain. Using default strain. Warning: gnlti136478984 has no strain. Using default strain. Warning: gnlti136478985 has no strain. Using default strain. Warning: gnlti136478986 has no strain. Using default strain. Warning: gnlti136478987 has no strain. Using default strain. Warning: gnlti136478988 has no strain. Using default strain. Warning: gnlti136478989 has no strain. Using default strain. Warning: gnlti136478990 has no strain. Using default strain. Warning: gnlti136478991 has no strain. Using default strain. Warning: gnlti136478992 has no strain. Using default strain. Warning: gnlti136478993 has no strain. Using default strain. Warning: gnlti136478994 has no strain. Using default strain. Warning: gnlti136478995 has no strain. Using default strain. Warning: gnlti136478996 has no strain. Using default strain. Warning: gnlti136478997 has no strain. Using default strain. Warning: gnlti136478998 has no strain. Using default strain. Warning: gnlti136478999 has no strain. Using default strain. Warning: gnlti136479000 has no strain. Using default strain. Warning: gnlti136479001 has no strain. Using default strain. Warning: gnlti136479002 has no strain. Using default strain. Warning: gnlti136479003 has no strain. Using default strain. Warning: gnlti136479004 has no strain. Using default strain. Warning: gnlti136479005 has no strain. Using default strain. Warning: gnlti136479006 has no strain. Using default strain. Warning: gnlti136479007 has no strain. Using default strain. Warning: gnlti136479008 has no strain. Using default strain. Warning: gnlti136479009 has no strain. Using default strain. Warning: gnlti136479010 has no strain. Using default strain. Warning: gnlti136479011 has no strain. Using default strain. Warning: gnlti136479012 has no strain. Using default strain. Warning: gnlti136479013 has no strain. Using default strain. Warning: gnlti136479014 has no strain. Using default strain. Warning: gnlti136479015 has no strain. Using default strain. Warning: gnlti136479016 has no strain. Using default strain. Warning: gnlti136479017 has no strain. Using default strain. Warning: gnlti136479018 has no strain. Using default strain. Warning: gnlti136479019 has no strain. Using default strain. Warning: gnlti136479020 has no strain. Using default strain. Warning: gnlti136479021 has no strain. Using default strain. Warning: gnlti136479022 has no strain. Using default strain. Warning: gnlti136479023 has no strain. Using default strain. Warning: gnlti136479024 has no strain. Using default strain. Warning: gnlti136479025 has no strain. Using default strain. Warning: gnlti136479026 has no strain. Using default strain. Warning: gnlti136479027 has no strain. Using default strain. Warning: gnlti136479028 has no strain. Using default strain. Warning: gnlti136479029 has no strain. Using default strain. Warning: gnlti136479030 has no strain. Using default strain. Warning: gnlti136479031 has no strain. Using default strain. Warning: gnlti136479032 has no strain. Using default strain. Warning: gnlti136479033 has no strain. Using default strain. Warning: gnlti136479034 has no strain. Using default strain. Warning: gnlti136479035 has no strain. Using default strain. Warning: gnlti136479036 has no strain. Using default strain. Warning: gnlti136479037 has no strain. Using default strain. Warning: gnlti136479038 has no strain. Using default strain. Warning: gnlti136479039 has no strain. Using default strain. Warning: gnlti136479040 has no strain. Using default strain. Warning: gnlti136479041 has no strain. Using default strain. Warning: gnlti136479042 has no strain. Using default strain. Warning: gnlti136479043 has no strain. Using default strain. Warning: gnlti136479044 has no strain. Using default strain. Warning: gnlti136479045 has no strain. Using default strain. Warning: gnlti136479046 has no strain. Using default strain. Warning: gnlti136479047 has no strain. Using default strain. Warning: gnlti136479048 has no strain. Using default strain. Warning: gnlti136479049 has no strain. Using default strain. Warning: gnlti136479050 has no strain. Using default strain. Warning: gnlti136479051 has no strain. Using default strain. Warning: gnlti136479052 has no strain. Using default strain. Warning: gnlti136479053 has no strain. Using default strain. Warning: gnlti136479054 has no strain. Using default strain. Warning: gnlti136479055 has no strain. Using default strain. Warning: gnlti136479056 has no strain. Using default strain. Warning: gnlti136479057 has no strain. Using default strain. Warning: gnlti136479058 has no strain. Using default strain. Warning: gnlti136479059 has no strain. Using default strain. Warning: gnlti136479060 has no strain. Using default strain. Warning: gnlti136479061 has no strain. Using default strain. Warning: gnlti136479062 has no strain. Using default strain. Warning: gnlti136479063 has no strain. Using default strain. Warning: gnlti136479064 has no strain. Using default strain. Warning: gnlti136479065 has no strain. Using default strain. Warning: gnlti136479066 has no strain. Using default strain. Warning: gnlti136479067 has no strain. Using default strain. Warning: gnlti136479068 has no strain. Using default strain. Warning: gnlti136479069 has no strain. Using default strain. Warning: gnlti136479070 has no strain. Using default strain. Warning: gnlti136479071 has no strain. Using default strain. Warning: gnlti136479072 has no strain. Using default strain. Warning: gnlti136479073 has no strain. Using default strain. Warning: gnlti136479074 has no strain. Using default strain. Warning: gnlti136479075 has no strain. Using default strain. Warning: gnlti136479076 has no strain. Using default strain. Warning: gnlti136479077 has no strain. Using default strain. Warning: gnlti136479078 has no strain. Using default strain. Warning: gnlti136479079 has no strain. Using default strain. Warning: gnlti136479080 has no strain. Using default strain. Warning: gnlti136479081 has no strain. Using default strain. Warning: gnlti136479082 has no strain. Using default strain. Warning: gnlti136479083 has no strain. Using default strain. Warning: gnlti136479084 has no strain. Using default strain. Warning: gnlti136479085 has no strain. Using default strain. Warning: gnlti136479086 has no strain. Using default strain. Warning: gnlti136479087 has no strain. Using default strain. Warning: gnlti136479088 has no strain. Using default strain. Warning: gnlti136479089 has no strain. Using default strain. Warning: gnlti136479090 has no strain. Using default strain. Warning: gnlti136479091 has no strain. Using default strain. Warning: gnlti136479092 has no strain. Using default strain. Warning: gnlti136479093 has no strain. Using default strain. Warning: gnlti136479094 has no strain. Using default strain. Warning: gnlti136479095 has no strain. Using default strain. Warning: gnlti136479096 has no strain. Using default strain. Warning: gnlti136479097 has no strain. Using default strain. Warning: gnlti136479098 has no strain. Using default strain. Warning: gnlti136479099 has no strain. Using default strain. Warning: gnlti136479100 has no strain. Using default strain. Warning: gnlti136479101 has no strain. Using default strain. Warning: gnlti136479102 has no strain. Using default strain. Warning: gnlti136479103 has no strain. Using default strain. Warning: gnlti136479104 has no strain. Using default strain. Warning: gnlti136479105 has no strain. Using default strain. Warning: gnlti136479106 has no strain. Using default strain. Warning: gnlti136479107 has no strain. Using default strain. Warning: gnlti136479108 has no strain. Using default strain. Warning: gnlti136479109 has no strain. Using default strain. Warning: gnlti136479110 has no strain. Using default strain. Warning: gnlti136479111 has no strain. Using default strain. Warning: gnlti136479112 has no strain. Using default strain. Warning: gnlti136479113 has no strain. Using default strain. Warning: gnlti136479114 has no strain. Using default strain. Warning: gnlti136479115 has no strain. Using default strain. Warning: gnlti136479116 has no strain. Using default strain. Warning: gnlti136479117 has no strain. Using default strain. Warning: gnlti136479118 has no strain. Using default strain. Warning: gnlti136479119 has no strain. Using default strain. Warning: gnlti136479120 has no strain. Using default strain. Warning: gnlti136479121 has no strain. Using default strain. Warning: gnlti136479122 has no strain. Using default strain. Warning: gnlti136479123 has no strain. Using default strain. Warning: gnlti136479124 has no strain. Using default strain. Warning: gnlti136479125 has no strain. Using default strain. Warning: gnlti136479126 has no strain. Using default strain. Warning: gnlti136479127 has no strain. Using default strain. Warning: gnlti136479128 has no strain. Using default strain. Warning: gnlti136479129 has no strain. Using default strain. Warning: gnlti136479130 has no strain. Using default strain. Warning: gnlti136479131 has no strain. Using default strain. Warning: gnlti136479132 has no strain. Using default strain. Warning: gnlti136479133 has no strain. Using default strain. Warning: gnlti136479134 has no strain. Using default strain. Warning: gnlti136479135 has no strain. Using default strain. Warning: gnlti136479136 has no strain. Using default strain. Warning: gnlti136479137 has no strain. Using default strain. Warning: gnlti136479138 has no strain. Using default strain. Warning: gnlti136479139 has no strain. Using default strain. Warning: gnlti136479140 has no strain. Using default strain. Warning: gnlti136479141 has no strain. Using default strain. Warning: gnlti136479142 has no strain. Using default strain. Warning: gnlti136479143 has no strain. Using default strain. Warning: gnlti136479144 has no strain. Using default strain. Warning: gnlti136479145 has no strain. Using default strain. Warning: gnlti136479146 has no strain. Using default strain. Warning: gnlti136479147 has no strain. Using default strain. Warning: gnlti136479148 has no strain. Using default strain. Warning: gnlti136479149 has no strain. Using default strain. Warning: gnlti136479150 has no strain. Using default strain. Warning: gnlti136479151 has no strain. Using default strain. Warning: gnlti136479152 has no strain. Using default strain. Warning: gnlti136479153 has no strain. Using default strain. Warning: gnlti136479154 has no strain. Using default strain. Warning: gnlti136479155 has no strain. Using default strain. Warning: gnlti136479156 has no strain. Using default strain. Warning: gnlti136479157 has no strain. Using default strain. Warning: gnlti136479158 has no strain. Using default strain. Warning: gnlti136479159 has no strain. Using default strain. Warning: gnlti136479160 has no strain. Using default strain. Warning: gnlti136479161 has no strain. Using default strain. Warning: gnlti136479162 has no strain. Using default strain. Warning: gnlti136479163 has no strain. Using default strain. Warning: gnlti136479164 has no strain. Using default strain. Warning: gnlti136479165 has no strain. Using default strain. Warning: gnlti136479166 has no strain. Using default strain. Warning: gnlti136479167 has no strain. Using default strain. Warning: gnlti136479168 has no strain. Using default strain. Warning: gnlti136479169 has no strain. Using default strain. Warning: gnlti136479170 has no strain. Using default strain. Warning: gnlti136479171 has no strain. Using default strain. Warning: gnlti136479172 has no strain. Using default strain. Warning: gnlti136479173 has no strain. Using default strain. Warning: gnlti136479174 has no strain. Using default strain. Warning: gnlti136479175 has no strain. Using default strain. Warning: gnlti136479176 has no strain. Using default strain. Warning: gnlti136479177 has no strain. Using default strain. Warning: gnlti136479178 has no strain. Using default strain. Warning: gnlti136479179 has no strain. Using default strain. Warning: gnlti136479180 has no strain. Using default strain. Warning: gnlti136479181 has no strain. Using default strain. Warning: gnlti136479182 has no strain. Using default strain. Warning: gnlti136479183 has no strain. Using default strain. Warning: gnlti136479184 has no strain. Using default strain. Warning: gnlti136479185 has no strain. Using default strain. Warning: gnlti136479186 has no strain. Using default strain. Warning: gnlti136479187 has no strain. Using default strain. Warning: gnlti136479188 has no strain. Using default strain. Warning: gnlti136479189 has no strain. Using default strain. Warning: gnlti136479190 has no strain. Using default strain. Warning: gnlti136479191 has no strain. Using default strain. Warning: gnlti136479192 has no strain. Using default strain. Warning: gnlti136479193 has no strain. Using default strain. Warning: gnlti136479194 has no strain. Using default strain. Warning: gnlti136479195 has no strain. Using default strain. Warning: gnlti136479196 has no strain. Using default strain. Warning: gnlti136479197 has no strain. Using default strain. Warning: gnlti136479198 has no strain. Using default strain. Warning: gnlti136479199 has no strain. Using default strain. Warning: gnlti136479200 has no strain. Using default strain. Warning: gnlti136479201 has no strain. Using default strain. Warning: gnlti136479202 has no strain. Using default strain. Warning: gnlti136479203 has no strain. Using default strain. Warning: gnlti136479204 has no strain. Using default strain. Warning: gnlti136479205 has no strain. Using default strain. Warning: gnlti136479206 has no strain. Using default strain. Warning: gnlti136479207 has no strain. Using default strain. Warning: gnlti136479208 has no strain. Using default strain. Warning: gnlti136479209 has no strain. Using default strain. Warning: gnlti136479210 has no strain. Using default strain. Warning: gnlti136479211 has no strain. Using default strain. Warning: gnlti136479212 has no strain. Using default strain. Warning: gnlti136479213 has no strain. Using default strain. Warning: gnlti136479214 has no strain. Using default strain. Warning: gnlti136479215 has no strain. Using default strain. Warning: gnlti136479216 has no strain. Using default strain. Warning: gnlti136479217 has no strain. Using default strain. Warning: gnlti136479218 has no strain. Using default strain. Warning: gnlti136479219 has no strain. Using default strain. Warning: gnlti136479220 has no strain. Using default strain. Warning: gnlti136479221 has no strain. Using default strain. Warning: gnlti136479222 has no strain. Using default strain. Warning: gnlti136479223 has no strain. Using default strain. Warning: gnlti136479224 has no strain. Using default strain. Warning: gnlti136479225 has no strain. Using default strain. Warning: gnlti136479226 has no strain. Using default strain. Warning: gnlti136479227 has no strain. Using default strain. Warning: gnlti136479228 has no strain. Using default strain. Warning: gnlti136479229 has no strain. Using default strain. Warning: gnlti136479230 has no strain. Using default strain. Warning: gnlti136479231 has no strain. Using default strain. Warning: gnlti136479232 has no strain. Using default strain. Warning: gnlti136479233 has no strain. Using default strain. Warning: gnlti136479234 has no strain. Using default strain. Warning: gnlti136479235 has no strain. Using default strain. Warning: gnlti136479236 has no strain. Using default strain. Warning: gnlti136479237 has no strain. Using default strain. Warning: gnlti136479238 has no strain. Using default strain. Warning: gnlti136479239 has no strain. Using default strain. Warning: gnlti136479240 has no strain. Using default strain. Warning: gnlti136479241 has no strain. Using default strain. Warning: gnlti136479242 has no strain. Using default strain. Warning: gnlti136479243 has no strain. Using default strain. Warning: gnlti136479244 has no strain. Using default strain. Warning: gnlti136479245 has no strain. Using default strain. Warning: gnlti136479246 has no strain. Using default strain. Warning: gnlti136479247 has no strain. Using default strain. Warning: gnlti136479248 has no strain. Using default strain. Warning: gnlti136479249 has no strain. Using default strain. Warning: gnlti136479250 has no strain. Using default strain. Warning: gnlti136479251 has no strain. Using default strain. Warning: gnlti136479252 has no strain. Using default strain. Warning: gnlti136479253 has no strain. Using default strain. Warning: gnlti136479254 has no strain. Using default strain. Warning: gnlti136479255 has no strain. Using default strain. Warning: gnlti136479256 has no strain. Using default strain. Warning: gnlti136479257 has no strain. Using default strain. Warning: gnlti136479258 has no strain. Using default strain. Warning: gnlti136479259 has no strain. Using default strain. Warning: gnlti136479260 has no strain. Using default strain. Warning: gnlti136479261 has no strain. Using default strain. Warning: gnlti136479262 has no strain. Using default strain. Warning: gnlti136479263 has no strain. Using default strain. Warning: gnlti136479264 has no strain. Using default strain. Warning: gnlti136479265 has no strain. Using default strain. Warning: gnlti136479266 has no strain. Using default strain. Warning: gnlti136479267 has no strain. Using default strain. Warning: gnlti136479268 has no strain. Using default strain. Warning: gnlti136479269 has no strain. Using default strain. Warning: gnlti136479270 has no strain. Using default strain. Warning: gnlti136479271 has no strain. Using default strain. Warning: gnlti136479272 has no strain. Using default strain. Warning: gnlti136479273 has no strain. Using default strain. Warning: gnlti136479274 has no strain. Using default strain. Warning: gnlti136479275 has no strain. Using default strain. Warning: gnlti136479276 has no strain. Using default strain. Warning: gnlti136479277 has no strain. Using default strain. Warning: gnlti136479278 has no strain. Using default strain. Warning: gnlti136479279 has no strain. Using default strain. Warning: gnlti136479280 has no strain. Using default strain. Warning: gnlti136479281 has no strain. Using default strain. Warning: gnlti136479282 has no strain. Using default strain. Warning: gnlti136479283 has no strain. Using default strain. Warning: gnlti136479284 has no strain. Using default strain. Warning: gnlti136479285 has no strain. Using default strain. Warning: gnlti136479286 has no strain. Using default strain. Warning: gnlti136479287 has no strain. Using default strain. Warning: gnlti136479288 has no strain. Using default strain. Warning: gnlti136479289 has no strain. Using default strain. Warning: gnlti136479290 has no strain. Using default strain. Warning: gnlti136479291 has no strain. Using default strain. Warning: gnlti136479292 has no strain. Using default strain. Warning: gnlti136479293 has no strain. Using default strain. Warning: gnlti136479294 has no strain. Using default strain. Warning: gnlti136479295 has no strain. Using default strain. Warning: gnlti136479296 has no strain. Using default strain. Warning: gnlti136479297 has no strain. Using default strain. Warning: gnlti136479298 has no strain. Using default strain. Warning: gnlti136479299 has no strain. Using default strain. Warning: gnlti136479300 has no strain. Using default strain. Warning: gnlti136479301 has no strain. Using default strain. Warning: gnlti136479302 has no strain. Using default strain. Warning: gnlti136479303 has no strain. Using default strain. Warning: gnlti136479304 has no strain. Using default strain. Warning: gnlti136479305 has no strain. Using default strain. Warning: gnlti136479306 has no strain. Using default strain. Warning: gnlti136479307 has no strain. Using default strain. Warning: gnlti136479308 has no strain. Using default strain. Warning: gnlti136479309 has no strain. Using default strain. Warning: gnlti136479310 has no strain. Using default strain. Warning: gnlti136479311 has no strain. Using default strain. Warning: gnlti136479312 has no strain. Using default strain. Warning: gnlti136479313 has no strain. Using default strain. Warning: gnlti136479314 has no strain. Using default strain. Warning: gnlti136479315 has no strain. Using default strain. Warning: gnlti136479316 has no strain. Using default strain. Warning: gnlti136479317 has no strain. Using default strain. Warning: gnlti136479318 has no strain. Using default strain. Warning: gnlti136479319 has no strain. Using default strain. Warning: gnlti136479320 has no strain. Using default strain. Warning: gnlti136479321 has no strain. Using default strain. Warning: gnlti136479322 has no strain. Using default strain. Warning: gnlti136479323 has no strain. Using default strain. Warning: gnlti136479324 has no strain. Using default strain. Warning: gnlti136479325 has no strain. Using default strain. Warning: gnlti136479326 has no strain. Using default strain. Warning: gnlti136479327 has no strain. Using default strain. Warning: gnlti136479328 has no strain. Using default strain. Warning: gnlti136479329 has no strain. Using default strain. Warning: gnlti136479330 has no strain. Using default strain. Warning: gnlti136479331 has no strain. Using default strain. Warning: gnlti136479332 has no strain. Using default strain. Warning: gnlti136479333 has no strain. Using default strain. Warning: gnlti136479334 has no strain. Using default strain. Warning: gnlti136479335 has no strain. Using default strain. Warning: gnlti136479336 has no strain. Using default strain. Warning: gnlti136479337 has no strain. Using default strain. Warning: gnlti136479338 has no strain. Using default strain. Warning: gnlti136479339 has no strain. Using default strain. Warning: gnlti136479340 has no strain. Using default strain. Warning: gnlti136479341 has no strain. Using default strain. Warning: gnlti136479342 has no strain. Using default strain. Warning: gnlti136479343 has no strain. Using default strain. Warning: gnlti136479344 has no strain. Using default strain. Warning: gnlti136479345 has no strain. Using default strain. Warning: gnlti136479346 has no strain. Using default strain. Warning: gnlti136479347 has no strain. Using default strain. Warning: gnlti136479348 has no strain. Using default strain. Warning: gnlti136479349 has no strain. Using default strain. Warning: gnlti136479350 has no strain. Using default strain. Warning: gnlti136479351 has no strain. Using default strain. Warning: gnlti136479352 has no strain. Using default strain. Warning: gnlti136479353 has no strain. Using default strain. Warning: gnlti136479354 has no strain. Using default strain. Warning: gnlti136479355 has no strain. Using default strain. Warning: gnlti136479356 has no strain. Using default strain. Warning: gnlti136479357 has no strain. Using default strain. Warning: gnlti136479358 has no strain. Using default strain. Warning: gnlti136479359 has no strain. Using default strain. Warning: gnlti136479360 has no strain. Using default strain. Warning: gnlti136479361 has no strain. Using default strain. Warning: gnlti136479362 has no strain. Using default strain. Warning: gnlti136479363 has no strain. Using default strain. Warning: gnlti136479364 has no strain. Using default strain. Warning: gnlti136479365 has no strain. Using default strain. Warning: gnlti136479366 has no strain. Using default strain. Warning: gnlti136479367 has no strain. Using default strain. Warning: gnlti136479368 has no strain. Using default strain. Warning: gnlti136479369 has no strain. Using default strain. Warning: gnlti136479370 has no strain. Using default strain. Warning: gnlti136479371 has no strain. Using default strain. Warning: gnlti136479372 has no strain. Using default strain. Warning: gnlti136479373 has no strain. Using default strain. Warning: gnlti136479374 has no strain. Using default strain. Warning: gnlti136479375 has no strain. Using default strain. Warning: gnlti136479376 has no strain. Using default strain. Warning: gnlti136479377 has no strain. Using default strain. Warning: gnlti136479378 has no strain. Using default strain. Warning: gnlti136479379 has no strain. Using default strain. Warning: gnlti136479380 has no strain. Using default strain. Warning: gnlti136479381 has no strain. Using default strain. Warning: gnlti136479382 has no strain. Using default strain. Warning: gnlti136479383 has no strain. Using default strain. Warning: gnlti136479384 has no strain. Using default strain. Warning: gnlti136479385 has no strain. Using default strain. Warning: gnlti136479386 has no strain. Using default strain. Warning: gnlti136479387 has no strain. Using default strain. Warning: gnlti136479388 has no strain. Using default strain. Warning: gnlti136479389 has no strain. Using default strain. Warning: gnlti136479390 has no strain. Using default strain. Warning: gnlti136479391 has no strain. Using default strain. Warning: gnlti136479392 has no strain. Using default strain. Warning: gnlti136479393 has no strain. Using default strain. Warning: gnlti136479394 has no strain. Using default strain. Warning: gnlti136479395 has no strain. Using default strain. Warning: gnlti136479396 has no strain. Using default strain. Warning: gnlti136479397 has no strain. Using default strain. Warning: gnlti136479398 has no strain. Using default strain. Warning: gnlti136479399 has no strain. Using default strain. Warning: gnlti136479400 has no strain. Using default strain. Warning: gnlti136479401 has no strain. Using default strain. Warning: gnlti136479402 has no strain. Using default strain. Warning: gnlti136479403 has no strain. Using default strain. Warning: gnlti136479404 has no strain. Using default strain. Warning: gnlti136479405 has no strain. Using default strain. Warning: gnlti136479406 has no strain. Using default strain. Warning: gnlti136479407 has no strain. Using default strain. Warning: gnlti136479408 has no strain. Using default strain. Warning: gnlti136479409 has no strain. Using default strain. Warning: gnlti136479410 has no strain. Using default strain. Warning: gnlti136479411 has no strain. Using default strain. Warning: gnlti136479412 has no strain. Using default strain. Warning: gnlti136479413 has no strain. Using default strain. Warning: gnlti136479414 has no strain. Using default strain. Warning: gnlti136479415 has no strain. Using default strain. Warning: gnlti136479416 has no strain. Using default strain. Warning: gnlti136479417 has no strain. Using default strain. Warning: gnlti136479418 has no strain. Using default strain. Warning: gnlti136479419 has no strain. Using default strain. Warning: gnlti136479420 has no strain. Using default strain. Warning: gnlti136479421 has no strain. Using default strain. Warning: gnlti136479422 has no strain. Using default strain. Warning: gnlti136479423 has no strain. Using default strain. Warning: gnlti136479424 has no strain. Using default strain. Warning: gnlti136479425 has no strain. Using default strain. Warning: gnlti136479426 has no strain. Using default strain. Warning: gnlti136479427 has no strain. Using default strain. Warning: gnlti136479428 has no strain. Using default strain. Warning: gnlti136479429 has no strain. Using default strain. Warning: gnlti136479430 has no strain. Using default strain. Warning: gnlti136479431 has no strain. Using default strain. Warning: gnlti136479432 has no strain. Using default strain. Warning: gnlti136479433 has no strain. Using default strain. Warning: gnlti136479434 has no strain. Using default strain. Warning: gnlti136479435 has no strain. Using default strain. Warning: gnlti136479436 has no strain. Using default strain. Warning: gnlti136479437 has no strain. Using default strain. Warning: gnlti136479438 has no strain. Using default strain. Warning: gnlti136479439 has no strain. Using default strain. Warning: gnlti136479440 has no strain. Using default strain. Warning: gnlti136479441 has no strain. Using default strain. Warning: gnlti136479442 has no strain. Using default strain. Warning: gnlti136479443 has no strain. Using default strain. Warning: gnlti136479444 has no strain. Using default strain. Warning: gnlti136479445 has no strain. Using default strain. Warning: gnlti136479446 has no strain. Using default strain. Warning: gnlti136479447 has no strain. Using default strain. Warning: gnlti136479448 has no strain. Using default strain. Warning: gnlti136479449 has no strain. Using default strain. Warning: gnlti136479450 has no strain. Using default strain. Warning: gnlti136479451 has no strain. Using default strain. Warning: gnlti136479452 has no strain. Using default strain. Warning: gnlti136479453 has no strain. Using default strain. Warning: gnlti136479454 has no strain. Using default strain. Warning: gnlti136479455 has no strain. Using default strain. Warning: gnlti136479456 has no strain. Using default strain. Warning: gnlti136479457 has no strain. Using default strain. Warning: gnlti136479458 has no strain. Using default strain. Warning: gnlti136479459 has no strain. Using default strain. Warning: gnlti136479460 has no strain. Using default strain. Warning: gnlti136479461 has no strain. Using default strain. Warning: gnlti136479462 has no strain. Using default strain. Warning: gnlti136479463 has no strain. Using default strain. Warning: gnlti136479464 has no strain. Using default strain. Warning: gnlti136479465 has no strain. Using default strain. Warning: gnlti136479466 has no strain. Using default strain. Warning: gnlti136479467 has no strain. Using default strain. Warning: gnlti136479468 has no strain. Using default strain. Warning: gnlti136479469 has no strain. Using default strain. Warning: gnlti136479470 has no strain. Using default strain. Warning: gnlti136479471 has no strain. Using default strain. Warning: gnlti136479472 has no strain. Using default strain. Warning: gnlti136479473 has no strain. Using default strain. Warning: gnlti136479474 has no strain. Using default strain. Warning: gnlti136479475 has no strain. Using default strain. Warning: gnlti136479476 has no strain. Using default strain. Warning: gnlti136479477 has no strain. Using default strain. Warning: gnlti136479478 has no strain. Using default strain. Warning: gnlti136479479 has no strain. Using default strain. Warning: gnlti136479480 has no strain. Using default strain. Warning: gnlti136479481 has no strain. Using default strain. Warning: gnlti136479482 has no strain. Using default strain. Warning: gnlti136479483 has no strain. Using default strain. Warning: gnlti136479484 has no strain. Using default strain. Warning: gnlti136479485 has no strain. Using default strain. Warning: gnlti136479486 has no strain. Using default strain. Warning: gnlti136479487 has no strain. Using default strain. Warning: gnlti136479488 has no strain. Using default strain. Warning: gnlti136479489 has no strain. Using default strain. Warning: gnlti136479490 has no strain. Using default strain. Warning: gnlti136479491 has no strain. Using default strain. Warning: gnlti136479492 has no strain. Using default strain. Warning: gnlti136479493 has no strain. Using default strain. Warning: gnlti136479494 has no strain. Using default strain. Warning: gnlti136479495 has no strain. Using default strain. Warning: gnlti136479496 has no strain. Using default strain. Warning: gnlti136479497 has no strain. Using default strain. Warning: gnlti136479498 has no strain. Using default strain. Warning: gnlti136479499 has no strain. Using default strain. Warning: gnlti136479500 has no strain. Using default strain. Warning: gnlti136479501 has no strain. Using default strain. Warning: gnlti136479502 has no strain. Using default strain. Warning: gnlti136479503 has no strain. Using default strain. Warning: gnlti136479504 has no strain. Using default strain. Warning: gnlti136479505 has no strain. Using default strain. Warning: gnlti136479506 has no strain. Using default strain. Warning: gnlti136479507 has no strain. Using default strain. Warning: gnlti136479508 has no strain. Using default strain. Warning: gnlti136479509 has no strain. Using default strain. Warning: gnlti136479510 has no strain. Using default strain. Warning: gnlti136479511 has no strain. Using default strain. Warning: gnlti136479512 has no strain. Using default strain. Warning: gnlti136479513 has no strain. Using default strain. Warning: gnlti136479514 has no strain. Using default strain. Warning: gnlti136479515 has no strain. Using default strain. Warning: gnlti136479516 has no strain. Using default strain. Warning: gnlti136479517 has no strain. Using default strain. Warning: gnlti136479518 has no strain. Using default strain. Warning: gnlti136479519 has no strain. Using default strain. Warning: gnlti136479520 has no strain. Using default strain. Warning: gnlti136479521 has no strain. Using default strain. Warning: gnlti136479522 has no strain. Using default strain. Warning: gnlti136479523 has no strain. Using default strain. Warning: gnlti136479524 has no strain. Using default strain. Warning: gnlti136479525 has no strain. Using default strain. Warning: gnlti136479526 has no strain. Using default strain. Warning: gnlti136479527 has no strain. Using default strain. Warning: gnlti136479528 has no strain. Using default strain. Warning: gnlti136479529 has no strain. Using default strain. Warning: gnlti136479530 has no strain. Using default strain. Warning: gnlti136479531 has no strain. Using default strain. Warning: gnlti136479532 has no strain. Using default strain. Warning: gnlti136479533 has no strain. Using default strain. Warning: gnlti136479534 has no strain. Using default strain. Warning: gnlti136479535 has no strain. Using default strain. Warning: gnlti136479536 has no strain. Using default strain. Warning: gnlti136479537 has no strain. Using default strain. Warning: gnlti136479538 has no strain. Using default strain. Warning: gnlti136479539 has no strain. Using default strain. Warning: gnlti136479540 has no strain. Using default strain. Warning: gnlti136479541 has no strain. Using default strain. Warning: gnlti136479542 has no strain. Using default strain. Warning: gnlti136479543 has no strain. Using default strain. Warning: gnlti136479544 has no strain. Using default strain. Warning: gnlti136479545 has no strain. Using default strain. Warning: gnlti136479546 has no strain. Using default strain. Warning: gnlti136479547 has no strain. Using default strain. Warning: gnlti136479548 has no strain. Using default strain. Warning: gnlti136479549 has no strain. Using default strain. Warning: gnlti136479550 has no strain. Using default strain. Warning: gnlti136479551 has no strain. Using default strain. Warning: gnlti136479552 has no strain. Using default strain. Warning: gnlti136479553 has no strain. Using default strain. Warning: gnlti136479554 has no strain. Using default strain. Warning: gnlti136479555 has no strain. Using default strain. Warning: gnlti136479556 has no strain. Using default strain. Warning: gnlti136479557 has no strain. Using default strain. Warning: gnlti136479558 has no strain. Using default strain. Warning: gnlti136479559 has no strain. Using default strain. Warning: gnlti136479560 has no strain. Using default strain. Warning: gnlti136479561 has no strain. Using default strain. Warning: gnlti136479562 has no strain. Using default strain. Warning: gnlti136479563 has no strain. Using default strain. Warning: gnlti136479564 has no strain. Using default strain. Warning: gnlti136479565 has no strain. Using default strain. Warning: gnlti136479566 has no strain. Using default strain. Warning: gnlti136479567 has no strain. Using default strain. Warning: gnlti136479568 has no strain. Using default strain. Warning: gnlti136479569 has no strain. Using default strain. Warning: gnlti136479570 has no strain. Using default strain. Warning: gnlti136479571 has no strain. Using default strain. Warning: gnlti136479572 has no strain. Using default strain. Warning: gnlti136479573 has no strain. Using default strain. Warning: gnlti136479574 has no strain. Using default strain. Warning: gnlti136479575 has no strain. Using default strain. Warning: gnlti136479576 has no strain. Using default strain. Warning: gnlti136479577 has no strain. Using default strain. Warning: gnlti136479578 has no strain. Using default strain. Warning: gnlti136479579 has no strain. Using default strain. Warning: gnlti136479580 has no strain. Using default strain. Warning: gnlti136479581 has no strain. Using default strain. Warning: gnlti136479582 has no strain. Using default strain. Warning: gnlti136479583 has no strain. Using default strain. Warning: gnlti136479584 has no strain. Using default strain. Warning: gnlti136479585 has no strain. Using default strain. Warning: gnlti136479586 has no strain. Using default strain. Warning: gnlti136479587 has no strain. Using default strain. Warning: gnlti136479588 has no strain. Using default strain. Warning: gnlti136479589 has no strain. Using default strain. Warning: gnlti136479590 has no strain. Using default strain. Warning: gnlti136479591 has no strain. Using default strain. Warning: gnlti136479592 has no strain. Using default strain. Warning: gnlti136479593 has no strain. Using default strain. Warning: gnlti136479594 has no strain. Using default strain. Warning: gnlti136479595 has no strain. Using default strain. Warning: gnlti136479596 has no strain. Using default strain. Warning: gnlti136479597 has no strain. Using default strain. Warning: gnlti136479598 has no strain. Using default strain. Warning: gnlti136479599 has no strain. Using default strain. Warning: gnlti136479600 has no strain. Using default strain. Warning: gnlti136479601 has no strain. Using default strain. Warning: gnlti136479602 has no strain. Using default strain. Warning: gnlti136479603 has no strain. Using default strain. Warning: gnlti136479604 has no strain. Using default strain. Warning: gnlti136479605 has no strain. Using default strain. Warning: gnlti136479606 has no strain. Using default strain. Warning: gnlti136479607 has no strain. Using default strain. Warning: gnlti136479608 has no strain. Using default strain. Warning: gnlti136479609 has no strain. Using default strain. Warning: gnlti136479610 has no strain. Using default strain. Warning: gnlti136479611 has no strain. Using default strain. Warning: gnlti136479612 has no strain. Using default strain. Warning: gnlti136479613 has no strain. Using default strain. Warning: gnlti136479614 has no strain. Using default strain. Warning: gnlti136479615 has no strain. Using default strain. Warning: gnlti136479616 has no strain. Using default strain. Warning: gnlti136479617 has no strain. Using default strain. Warning: gnlti136479618 has no strain. Using default strain. Warning: gnlti136479619 has no strain. Using default strain. Warning: gnlti136479620 has no strain. Using default strain. Warning: gnlti136479621 has no strain. Using default strain. Warning: gnlti136479622 has no strain. Using default strain. Warning: gnlti136479623 has no strain. Using default strain. Warning: gnlti136479624 has no strain. Using default strain. Warning: gnlti136479625 has no strain. Using default strain. Warning: gnlti136479626 has no strain. Using default strain. Warning: gnlti136479627 has no strain. Using default strain. Warning: gnlti136479628 has no strain. Using default strain. Warning: gnlti136479629 has no strain. Using default strain. Warning: gnlti136479630 has no strain. Using default strain. Warning: gnlti136479631 has no strain. Using default strain. Warning: gnlti136479632 has no strain. Using default strain. Warning: gnlti136479633 has no strain. Using default strain. Warning: gnlti136479634 has no strain. Using default strain. Warning: gnlti136479635 has no strain. Using default strain. Warning: gnlti136479636 has no strain. Using default strain. Warning: gnlti136479637 has no strain. Using default strain. Warning: gnlti136479638 has no strain. Using default strain. Warning: gnlti136479639 has no strain. Using default strain. Warning: gnlti136479640 has no strain. Using default strain. Warning: gnlti136479641 has no strain. Using default strain. Warning: gnlti136479642 has no strain. Using default strain. Warning: gnlti136479643 has no strain. Using default strain. Warning: gnlti136479644 has no strain. Using default strain. Warning: gnlti136479645 has no strain. Using default strain. Warning: gnlti136479646 has no strain. Using default strain. Warning: gnlti136479647 has no strain. Using default strain. Warning: gnlti136479648 has no strain. Using default strain. Warning: gnlti136479649 has no strain. Using default strain. Warning: gnlti136479650 has no strain. Using default strain. Warning: gnlti136479651 has no strain. Using default strain. Warning: gnlti136479652 has no strain. Using default strain. Warning: gnlti136479653 has no strain. Using default strain. Warning: gnlti136479654 has no strain. Using default strain. Warning: gnlti136479655 has no strain. Using default strain. Warning: gnlti136479656 has no strain. Using default strain. Warning: gnlti136479657 has no strain. Using default strain. Warning: gnlti136479658 has no strain. Using default strain. Warning: gnlti136479659 has no strain. Using default strain. Warning: gnlti136479660 has no strain. Using default strain. Warning: gnlti136479661 has no strain. Using default strain. Warning: gnlti136479662 has no strain. Using default strain. Warning: gnlti136479663 has no strain. Using default strain. Warning: gnlti136479664 has no strain. Using default strain. Warning: gnlti136479665 has no strain. Using default strain. Warning: gnlti136479666 has no strain. Using default strain. Warning: gnlti136479667 has no strain. Using default strain. Warning: gnlti136479668 has no strain. Using default strain. Warning: gnlti136479669 has no strain. Using default strain. Warning: gnlti136479670 has no strain. Using default strain. Warning: gnlti136479671 has no strain. Using default strain. Warning: gnlti136479672 has no strain. Using default strain. Warning: gnlti136479673 has no strain. Using default strain. Warning: gnlti136479674 has no strain. Using default strain. Warning: gnlti136479675 has no strain. Using default strain. Warning: gnlti136479676 has no strain. Using default strain. Warning: gnlti136479677 has no strain. Using default strain. Warning: gnlti136479678 has no strain. Using default strain. Warning: gnlti136479679 has no strain. Using default strain. Warning: gnlti136479680 has no strain. Using default strain. Warning: gnlti136479681 has no strain. Using default strain. Warning: gnlti136479682 has no strain. Using default strain. Warning: gnlti136479683 has no strain. Using default strain. Warning: gnlti136479684 has no strain. Using default strain. Warning: gnlti136479685 has no strain. Using default strain. Warning: gnlti136479686 has no strain. Using default strain. Warning: gnlti136479687 has no strain. Using default strain. Warning: gnlti136479688 has no strain. Using default strain. Warning: gnlti136479689 has no strain. Using default strain. Warning: gnlti136479690 has no strain. Using default strain. Warning: gnlti136479691 has no strain. Using default strain. Warning: gnlti136479692 has no strain. Using default strain. Warning: gnlti136479693 has no strain. Using default strain. Warning: gnlti136479694 has no strain. Using default strain. Warning: gnlti136479695 has no strain. Using default strain. Warning: gnlti136479696 has no strain. Using default strain. Warning: gnlti136479697 has no strain. Using default strain. Warning: gnlti136479698 has no strain. Using default strain. Warning: gnlti136479699 has no strain. Using default strain. Warning: gnlti136479700 has no strain. Using default strain. Warning: gnlti136479701 has no strain. Using default strain. Warning: gnlti136479702 has no strain. Using default strain. Warning: gnlti136479703 has no strain. Using default strain. Warning: gnlti136479704 has no strain. Using default strain. Warning: gnlti136479705 has no strain. Using default strain. Warning: gnlti136479706 has no strain. Using default strain. Warning: gnlti136479707 has no strain. Using default strain. Warning: gnlti136479708 has no strain. Using default strain. Warning: gnlti136479709 has no strain. Using default strain. Warning: gnlti136479710 has no strain. Using default strain. Warning: gnlti136479711 has no strain. Using default strain. Warning: gnlti136479712 has no strain. Using default strain. Warning: gnlti136479713 has no strain. Using default strain. Warning: gnlti136479714 has no strain. Using default strain. Warning: gnlti136479715 has no strain. Using default strain. Warning: gnlti136479716 has no strain. Using default strain. Warning: gnlti136479717 has no strain. Using default strain. Warning: gnlti136479718 has no strain. Using default strain. Warning: gnlti136479719 has no strain. Using default strain. Warning: gnlti136479720 has no strain. Using default strain. Warning: gnlti136479721 has no strain. Using default strain. Warning: gnlti136479722 has no strain. Using default strain. Warning: gnlti136479723 has no strain. Using default strain. Warning: gnlti136479724 has no strain. Using default strain. Warning: gnlti136479725 has no strain. Using default strain. Warning: gnlti136479726 has no strain. Using default strain. Warning: gnlti136479727 has no strain. Using default strain. Warning: gnlti136479728 has no strain. Using default strain. Warning: gnlti136479729 has no strain. Using default strain. Warning: gnlti136479730 has no strain. Using default strain. Warning: gnlti136479731 has no strain. Using default strain. Warning: gnlti136479732 has no strain. Using default strain. Warning: gnlti136479733 has no strain. Using default strain. Warning: gnlti136479734 has no strain. Using default strain. Warning: gnlti136479735 has no strain. Using default strain. Warning: gnlti136479736 has no strain. Using default strain. Warning: gnlti136479737 has no strain. Using default strain. Warning: gnlti136479738 has no strain. Using default strain. Warning: gnlti136479739 has no strain. Using default strain. Warning: gnlti136479740 has no strain. Using default strain. Warning: gnlti136479741 has no strain. Using default strain. Warning: gnlti136479742 has no strain. Using default strain. Warning: gnlti136479743 has no strain. Using default strain. Warning: gnlti136479744 has no strain. Using default strain. Warning: gnlti136479745 has no strain. Using default strain. Warning: gnlti136479746 has no strain. Using default strain. Warning: gnlti136479747 has no strain. Using default strain. Warning: gnlti136479748 has no strain. Using default strain. Warning: gnlti136479749 has no strain. Using default strain. Warning: gnlti136479750 has no strain. Using default strain. Warning: gnlti136479751 has no strain. Using default strain. Warning: gnlti136479752 has no strain. Using default strain. Warning: gnlti136479753 has no strain. Using default strain. Warning: gnlti136479754 has no strain. Using default strain. Warning: gnlti136479755 has no strain. Using default strain. Warning: gnlti136479756 has no strain. Using default strain. Warning: gnlti136479757 has no strain. Using default strain. Warning: gnlti136479758 has no strain. Using default strain. Warning: gnlti136479759 has no strain. Using default strain. Warning: gnlti136479760 has no strain. Using default strain. Warning: gnlti136479761 has no strain. Using default strain. Warning: gnlti136479762 has no strain. Using default strain. Warning: gnlti136479763 has no strain. Using default strain. Warning: gnlti136479764 has no strain. Using default strain. Warning: gnlti136479765 has no strain. Using default strain. Warning: gnlti136479766 has no strain. Using default strain. Warning: gnlti136479767 has no strain. Using default strain. Warning: gnlti136479768 has no strain. Using default strain. Warning: gnlti136479769 has no strain. Using default strain. Warning: gnlti136479770 has no strain. Using default strain. Warning: gnlti136479771 has no strain. Using default strain. Warning: gnlti136479772 has no strain. Using default strain. Warning: gnlti136479773 has no strain. Using default strain. Warning: gnlti136479774 has no strain. Using default strain. Warning: gnlti136479775 has no strain. Using default strain. Warning: gnlti136479776 has no strain. Using default strain. Warning: gnlti136479777 has no strain. Using default strain. Warning: gnlti136479778 has no strain. Using default strain. Warning: gnlti136479779 has no strain. Using default strain. Warning: gnlti136479780 has no strain. Using default strain. Warning: gnlti136479781 has no strain. Using default strain. Warning: gnlti136479782 has no strain. Using default strain. Warning: gnlti136479783 has no strain. Using default strain. Warning: gnlti136479784 has no strain. Using default strain. Warning: gnlti136479785 has no strain. Using default strain. Warning: gnlti136479786 has no strain. Using default strain. Warning: gnlti136479787 has no strain. Using default strain. Warning: gnlti136479788 has no strain. Using default strain. Warning: gnlti136479789 has no strain. Using default strain. Warning: gnlti136479790 has no strain. Using default strain. Warning: gnlti136479791 has no strain. Using default strain. Warning: gnlti136479792 has no strain. Using default strain. Warning: gnlti136479793 has no strain. Using default strain. Warning: gnlti136479794 has no strain. Using default strain. Warning: gnlti136479795 has no strain. Using default strain. Warning: gnlti136479796 has no strain. Using default strain. Warning: gnlti136479797 has no strain. Using default strain. Warning: gnlti136479798 has no strain. Using default strain. Warning: gnlti136479799 has no strain. Using default strain. Warning: gnlti136479800 has no strain. Using default strain. Warning: gnlti136479801 has no strain. Using default strain. Warning: gnlti136479802 has no strain. Using default strain. Warning: gnlti136479803 has no strain. Using default strain. Warning: gnlti136479804 has no strain. Using default strain. Warning: gnlti136479805 has no strain. Using default strain. Warning: gnlti136479806 has no strain. Using default strain. Warning: gnlti136479807 has no strain. Using default strain. Warning: gnlti136479808 has no strain. Using default strain. Warning: gnlti136479809 has no strain. Using default strain. Warning: gnlti136479810 has no strain. Using default strain. Warning: gnlti136479811 has no strain. Using default strain. Warning: gnlti136479812 has no strain. Using default strain. Warning: gnlti136479813 has no strain. Using default strain. Warning: gnlti136479814 has no strain. Using default strain. Warning: gnlti136479815 has no strain. Using default strain. Warning: gnlti136479816 has no strain. Using default strain. Warning: gnlti136479817 has no strain. Using default strain. Warning: gnlti136479818 has no strain. Using default strain. Warning: gnlti136479819 has no strain. Using default strain. Warning: gnlti136479820 has no strain. Using default strain. Warning: gnlti136479821 has no strain. Using default strain. Warning: gnlti136479822 has no strain. Using default strain. Warning: gnlti136479823 has no strain. Using default strain. Warning: gnlti136479824 has no strain. Using default strain. Warning: gnlti136479825 has no strain. Using default strain. Warning: gnlti136479826 has no strain. Using default strain. Warning: gnlti136479827 has no strain. Using default strain. Warning: gnlti136479828 has no strain. Using default strain. Warning: gnlti136479829 has no strain. Using default strain. Warning: gnlti136479830 has no strain. Using default strain. Warning: gnlti136479831 has no strain. Using default strain. Warning: gnlti136479832 has no strain. Using default strain. Warning: gnlti136479833 has no strain. Using default strain. Warning: gnlti136479834 has no strain. Using default strain. Warning: gnlti136479835 has no strain. Using default strain. Warning: gnlti136479836 has no strain. Using default strain. Warning: gnlti136479837 has no strain. Using default strain. Warning: gnlti136479838 has no strain. Using default strain. Warning: gnlti136479839 has no strain. Using default strain. Warning: gnlti136479840 has no strain. Using default strain. Warning: gnlti136479841 has no strain. Using default strain. Warning: gnlti136479842 has no strain. Using default strain. Warning: gnlti136479843 has no strain. Using default strain. Warning: gnlti136479844 has no strain. Using default strain. Warning: gnlti136479845 has no strain. Using default strain. Warning: gnlti136479846 has no strain. Using default strain. Warning: gnlti136479847 has no strain. Using default strain. Warning: gnlti136479848 has no strain. Using default strain. Warning: gnlti136479849 has no strain. Using default strain. Warning: gnlti136479850 has no strain. Using default strain. Warning: gnlti136479851 has no strain. Using default strain. Warning: gnlti136479852 has no strain. Using default strain. Warning: gnlti136479853 has no strain. Using default strain. Warning: gnlti136479854 has no strain. Using default strain. Warning: gnlti136479855 has no strain. Using default strain. Warning: gnlti136479856 has no strain. Using default strain. Warning: gnlti136479857 has no strain. Using default strain. Warning: gnlti136479858 has no strain. Using default strain. Warning: gnlti136479859 has no strain. Using default strain. Warning: gnlti136479860 has no strain. Using default strain. Warning: gnlti136479861 has no strain. Using default strain. Warning: gnlti136479862 has no strain. Using default strain. Warning: gnlti136479863 has no strain. Using default strain. Warning: gnlti136479864 has no strain. Using default strain. Warning: gnlti136479865 has no strain. Using default strain. Warning: gnlti136479866 has no strain. Using default strain. Warning: gnlti136479867 has no strain. Using default strain. Warning: gnlti136479868 has no strain. Using default strain. Warning: gnlti136479869 has no strain. Using default strain. Warning: gnlti136479870 has no strain. Using default strain. Warning: gnlti136479871 has no strain. Using default strain. Warning: gnlti136479872 has no strain. Using default strain. Warning: gnlti136479873 has no strain. Using default strain. Warning: gnlti136479874 has no strain. Using default strain. Warning: gnlti136479875 has no strain. Using default strain. Warning: gnlti136479876 has no strain. Using default strain. Warning: gnlti136479877 has no strain. Using default strain. Warning: gnlti136479878 has no strain. Using default strain. Warning: gnlti136479879 has no strain. Using default strain. Warning: gnlti136479880 has no strain. Using default strain. Warning: gnlti136479881 has no strain. Using default strain. Warning: gnlti136479882 has no strain. Using default strain. Warning: gnlti136479883 has no strain. Using default strain. Warning: gnlti136479884 has no strain. Using default strain. Warning: gnlti136479885 has no strain. Using default strain. Warning: gnlti136479886 has no strain. Using default strain. Warning: gnlti136479887 has no strain. Using default strain. Warning: gnlti136479888 has no strain. Using default strain. Warning: gnlti136479889 has no strain. Using default strain. Starting minimum left vector clip ... done. Pool has 2396 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 2396 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 547 reads have not enough good bases for assembly. - 1849 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 396 Localtime: Thu Jul 15 12:00:00 2010 Generated 2396 unique template ids for 2396 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 2396 reads. Tagging poly A/T stretches at ends of reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 4792 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 2395 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 4515 possible: 554148 permbans: 0 Hits chosen: 3209 Localtime: Thu Jul 15 12:00:00 2010 Pre-assembly alignment search for read extension and / or vector clipping: Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Pre-assembly vector clipping Performing vector clipping ... done. Pool has 2396 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 2396 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 550 reads have not enough good bases for assembly. - 1846 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 395 Localtime: Thu Jul 15 12:00:00 2010 Generated 2396 unique template ids for 2396 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 2396 reads. Tagging poly A/T stretches at ends of reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 4792 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 2395 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 3421 possible: 552590 permbans: 0 Hits chosen: 2507 Localtime: Thu Jul 15 12:00:00 2010 Pass: 1 Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1846 +[1] +++++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1 Contig length: 496 Avg. contig coverage: 4.63 Consensus contains: A: 93 C: 139 G: 109 T: 125 N: 0 IUPAC: 29 Funny: 0 *: 1 Num reads: 6 Avg. read length: 383 Reads contain 2286 bases, 1 Ns and 14 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 3 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 1 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1846 +[1] ppp++ppaaa RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1 Contig length: 509 Avg. contig coverage: 2.55 Consensus contains: A: 91 C: 147 G: 115 T: 133 N: 0 IUPAC: 23 Funny: 0 *: 0 Num reads: 3 Avg. read length: 434 Reads contain 1299 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 2 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1843 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 2 Contig length: 494 Avg. contig coverage: 4.44 Consensus contains: A: 134 C: 125 G: 114 T: 106 N: 0 IUPAC: 11 Funny: 0 *: 4 Num reads: 5 Avg. read length: 438 Reads contain 2181 bases, 2 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 1 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 2 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1843 +[1] ppp+ppp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 2 Contig length: 437 Avg. contig coverage: 1.89 Consensus contains: A: 126 C: 112 G: 94 T: 98 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 414 Reads contain 823 bases, 2 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 3 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1841 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 3 Contig length: 611 Avg. contig coverage: 3.53 Consensus contains: A: 145 C: 129 G: 156 T: 158 N: 0 IUPAC: 21 Funny: 0 *: 2 Num reads: 5 Avg. read length: 432 Reads contain 2153 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 4 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1836 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 4 Contig length: 912 Avg. contig coverage: 2.7 Consensus contains: A: 255 C: 243 G: 180 T: 220 N: 0 IUPAC: 11 Funny: 0 *: 3 Num reads: 5 Avg. read length: 493 Reads contain 2456 bases, 2 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 4 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 4 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1836 +[1] +pp+p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 4 Contig length: 842 Avg. contig coverage: 1.68 Consensus contains: A: 222 C: 235 G: 178 T: 205 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 3 Avg. read length: 471 Reads contain 1412 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 5 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1833 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 5 Contig length: 544 Avg. contig coverage: 1.92 Consensus contains: A: 177 C: 134 G: 100 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 522 Reads contain 1044 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 6 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1831 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 6 Contig length: 382 Avg. contig coverage: 3.77 Consensus contains: A: 125 C: 75 G: 114 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 4 Avg. read length: 360 Reads contain 1442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 7 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1827 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 7 Contig length: 563 Avg. contig coverage: 2.94 Consensus contains: A: 168 C: 112 G: 146 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 553 Reads contain 1653 bases, 5 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 8 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1824 +[1] ++a+ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 8 Contig length: 509 Avg. contig coverage: 3.62 Consensus contains: A: 132 C: 128 G: 116 T: 119 N: 0 IUPAC: 7 Funny: 0 *: 7 Num reads: 4 Avg. read length: 461 Reads contain 1822 bases, 1 Ns and 22 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 9 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1820 +[1] +a+++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 9 Contig length: 701 Avg. contig coverage: 3.29 Consensus contains: A: 153 C: 151 G: 193 T: 163 N: 0 IUPAC: 38 Funny: 0 *: 3 Num reads: 5 Avg. read length: 461 Reads contain 2292 bases, 0 Ns and 17 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 10 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1815 +[1] +++++++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 10 Contig length: 682 Avg. contig coverage: 5.05 Consensus contains: A: 171 C: 154 G: 188 T: 147 N: 0 IUPAC: 17 Funny: 0 *: 5 Num reads: 8 Avg. read length: 431 Reads contain 3424 bases, 3 Ns and 22 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 11 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1807 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 11 Contig length: 638 Avg. contig coverage: 2.57 Consensus contains: A: 169 C: 179 G: 122 T: 163 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 4 Avg. read length: 410 Reads contain 1641 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 12 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1803 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 12 Contig length: 589 Avg. contig coverage: 2.68 Consensus contains: A: 128 C: 189 G: 110 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 526 Reads contain 1579 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 13 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1800 +[1] ++r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 13 Contig length: 580 Avg. contig coverage: 2.61 Consensus contains: A: 134 C: 144 G: 158 T: 117 N: 0 IUPAC: 25 Funny: 0 *: 2 Num reads: 3 Avg. read length: 506 Reads contain 1512 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 14 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1797 +[1] +++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 14 Contig length: 559 Avg. contig coverage: 4.16 Consensus contains: A: 124 C: 131 G: 130 T: 144 N: 0 IUPAC: 13 Funny: 0 *: 17 Num reads: 6 Avg. read length: 387 Reads contain 2254 bases, 1 Ns and 72 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 2 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 14 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1797 +[1] +pp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 14 Contig length: 423 Avg. contig coverage: 1.89 Consensus contains: A: 105 C: 96 G: 98 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 401 Reads contain 800 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 15 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1795 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 15 Contig length: 422 Avg. contig coverage: 3.53 Consensus contains: A: 113 C: 73 G: 91 T: 129 N: 0 IUPAC: 15 Funny: 0 *: 1 Num reads: 4 Avg. read length: 372 Reads contain 1485 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 16 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1791 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 16 Contig length: 602 Avg. contig coverage: 2.57 Consensus contains: A: 155 C: 151 G: 135 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 517 Reads contain 1551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 17 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1788 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 17 Contig length: 542 Avg. contig coverage: 2.52 Consensus contains: A: 143 C: 133 G: 137 T: 125 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 456 Reads contain 1360 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 18 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1785 +[1] +++a+++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 18 Contig length: 1008 Avg. contig coverage: 3.1 Consensus contains: A: 220 C: 200 G: 239 T: 274 N: 0 IUPAC: 70 Funny: 0 *: 5 Num reads: 7 Avg. read length: 446 Reads contain 3107 bases, 0 Ns and 18 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 1 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 18 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1785 +[1] pp+++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 18 Contig length: 631 Avg. contig coverage: 2.89 Consensus contains: A: 127 C: 149 G: 165 T: 150 N: 0 IUPAC: 35 Funny: 0 *: 5 Num reads: 4 Avg. read length: 456 Reads contain 1812 bases, 0 Ns and 12 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 19 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1781 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 19 Contig length: 412 Avg. contig coverage: 3.59 Consensus contains: A: 107 C: 91 G: 86 T: 114 N: 0 IUPAC: 12 Funny: 0 *: 2 Num reads: 4 Avg. read length: 370 Reads contain 1473 bases, 0 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 20 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1777 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 20 Contig length: 625 Avg. contig coverage: 2.49 Consensus contains: A: 155 C: 122 G: 175 T: 171 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 520 Reads contain 1554 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 21 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1774 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 21 Contig length: 512 Avg. contig coverage: 2.66 Consensus contains: A: 126 C: 117 G: 103 T: 164 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 4 Avg. read length: 340 Reads contain 1362 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 1 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 21 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1774 +[1] pp+pp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 21 Contig length: 359 Avg. contig coverage: 1.54 Consensus contains: A: 89 C: 81 G: 73 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 276 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 22 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1772 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 22 Contig length: 512 Avg. contig coverage: 1.58 Consensus contains: A: 126 C: 117 G: 104 T: 164 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 405 Reads contain 809 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 23 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1770 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 23 Contig length: 462 Avg. contig coverage: 2.78 Consensus contains: A: 106 C: 89 G: 113 T: 153 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 429 Reads contain 1285 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 24 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1767 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 24 Contig length: 680 Avg. contig coverage: 2.53 Consensus contains: A: 174 C: 134 G: 187 T: 181 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 574 Reads contain 1718 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 25 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1764 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 25 Contig length: 695 Avg. contig coverage: 2.1 Consensus contains: A: 198 C: 173 G: 138 T: 185 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 488 Reads contain 1464 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 26 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1761 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 26 Contig length: 440 Avg. contig coverage: 2.87 Consensus contains: A: 109 C: 102 G: 105 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 422 Reads contain 1265 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 27 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1758 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 27 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 123 C: 125 G: 138 T: 123 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 509 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 28 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1757 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 28 Contig length: 552 Avg. contig coverage: 2.93 Consensus contains: A: 151 C: 132 G: 127 T: 121 N: 0 IUPAC: 16 Funny: 0 *: 5 Num reads: 3 Avg. read length: 539 Reads contain 1605 bases, 2 Ns and 12 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 29 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1754 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 29 Contig length: 585 Avg. contig coverage: 2.21 Consensus contains: A: 180 C: 139 G: 109 T: 143 N: 0 IUPAC: 13 Funny: 0 *: 1 Num reads: 3 Avg. read length: 432 Reads contain 1295 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 30 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1751 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 30 Contig length: 467 Avg. contig coverage: 2.81 Consensus contains: A: 114 C: 78 G: 151 T: 118 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 3 Avg. read length: 438 Reads contain 1315 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 31 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1748 +[1] +++ara RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 31 Contig length: 415 Avg. contig coverage: 3.59 Consensus contains: A: 71 C: 109 G: 91 T: 94 N: 0 IUPAC: 45 Funny: 0 *: 5 Num reads: 4 Avg. read length: 372 Reads contain 1478 bases, 0 Ns and 13 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 32 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1744 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 32 Contig length: 490 Avg. contig coverage: 2.6 Consensus contains: A: 131 C: 93 G: 126 T: 136 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 424 Reads contain 1270 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 33 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1741 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 33 Contig length: 519 Avg. contig coverage: 2.75 Consensus contains: A: 143 C: 129 G: 78 T: 150 N: 0 IUPAC: 18 Funny: 0 *: 1 Num reads: 3 Avg. read length: 476 Reads contain 1428 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 34 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1738 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 34 Contig length: 570 Avg. contig coverage: 3.37 Consensus contains: A: 153 C: 116 G: 145 T: 120 N: 0 IUPAC: 34 Funny: 0 *: 2 Num reads: 5 Avg. read length: 384 Reads contain 1915 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 6 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 34 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1738 +[1] ppp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 34 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 134 C: 92 G: 131 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 35 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1737 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 35 Contig length: 538 Avg. contig coverage: 2.48 Consensus contains: A: 133 C: 147 G: 100 T: 153 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 3 Avg. read length: 446 Reads contain 1337 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 36 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1734 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 36 Contig length: 540 Avg. contig coverage: 2.73 Consensus contains: A: 152 C: 128 G: 91 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 3 Avg. read length: 492 Reads contain 1472 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 37 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1731 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 37 Contig length: 557 Avg. contig coverage: 2.66 Consensus contains: A: 123 C: 131 G: 131 T: 146 N: 0 IUPAC: 14 Funny: 0 *: 12 Num reads: 4 Avg. read length: 371 Reads contain 1454 bases, 0 Ns and 32 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 38 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1727 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 38 Contig length: 377 Avg. contig coverage: 2.93 Consensus contains: A: 86 C: 104 G: 85 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 3 Avg. read length: 368 Reads contain 1101 bases, 3 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 39 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1724 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 39 Contig length: 464 Avg. contig coverage: 3.61 Consensus contains: A: 125 C: 121 G: 92 T: 109 N: 0 IUPAC: 9 Funny: 0 *: 8 Num reads: 4 Avg. read length: 419 Reads contain 1653 bases, 0 Ns and 24 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 40 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1720 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 40 Contig length: 589 Avg. contig coverage: 2.17 Consensus contains: A: 185 C: 139 G: 113 T: 151 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 427 Reads contain 1281 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 41 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1717 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 41 Contig length: 511 Avg. contig coverage: 2.68 Consensus contains: A: 138 C: 148 G: 102 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 457 Reads contain 1373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 42 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1714 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 42 Contig length: 517 Avg. contig coverage: 1.98 Consensus contains: A: 111 C: 135 G: 110 T: 154 N: 0 IUPAC: 5 Funny: 0 *: 2 Num reads: 2 Avg. read length: 512 Reads contain 1020 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 43 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1712 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 43 Contig length: 548 Avg. contig coverage: 2.2 Consensus contains: A: 109 C: 114 G: 116 T: 209 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 402 Reads contain 1207 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 44 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1709 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 44 Contig length: 530 Avg. contig coverage: 2.41 Consensus contains: A: 160 C: 119 G: 125 T: 117 N: 0 IUPAC: 5 Funny: 0 *: 4 Num reads: 3 Avg. read length: 426 Reads contain 1273 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 45 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1706 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 45 Contig length: 523 Avg. contig coverage: 2.43 Consensus contains: A: 136 C: 126 G: 126 T: 127 N: 0 IUPAC: 6 Funny: 0 *: 2 Num reads: 3 Avg. read length: 424 Reads contain 1267 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 46 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1703 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 46 Contig length: 382 Avg. contig coverage: 2.72 Consensus contains: A: 84 C: 96 G: 86 T: 115 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 346 Reads contain 1040 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 47 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1700 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 47 Contig length: 576 Avg. contig coverage: 2.3 Consensus contains: A: 178 C: 145 G: 103 T: 136 N: 0 IUPAC: 12 Funny: 0 *: 2 Num reads: 3 Avg. read length: 442 Reads contain 1323 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 48 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1697 +[1] ++r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 48 Contig length: 495 Avg. contig coverage: 2.42 Consensus contains: A: 123 C: 136 G: 93 T: 134 N: 0 IUPAC: 7 Funny: 0 *: 2 Num reads: 3 Avg. read length: 400 Reads contain 1192 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 49 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1694 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 49 Contig length: 415 Avg. contig coverage: 2.86 Consensus contains: A: 95 C: 127 G: 87 T: 104 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 396 Reads contain 1183 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 50 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1691 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 50 Contig length: 577 Avg. contig coverage: 2.22 Consensus contains: A: 194 C: 113 G: 109 T: 154 N: 2 IUPAC: 0 Funny: 0 *: 5 Num reads: 3 Avg. read length: 427 Reads contain 1271 bases, 2 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 51 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1688 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 51 Contig length: 621 Avg. contig coverage: 2.08 Consensus contains: A: 164 C: 163 G: 128 T: 158 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 3 Avg. read length: 431 Reads contain 1295 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 52 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1685 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 52 Contig length: 694 Avg. contig coverage: 1.98 Consensus contains: A: 225 C: 180 G: 119 T: 168 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 459 Reads contain 1376 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 53 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1682 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 53 Contig length: 451 Avg. contig coverage: 2.42 Consensus contains: A: 100 C: 132 G: 115 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 365 Reads contain 1093 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 54 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1679 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 54 Contig length: 608 Avg. contig coverage: 1.96 Consensus contains: A: 184 C: 118 G: 156 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 597 Reads contain 1195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 55 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1677 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 55 Contig length: 929 Avg. contig coverage: 1.67 Consensus contains: A: 277 C: 179 G: 187 T: 283 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 3 Avg. read length: 520 Reads contain 1554 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 56 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1674 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 56 Contig length: 492 Avg. contig coverage: 2.79 Consensus contains: A: 135 C: 130 G: 74 T: 128 N: 0 IUPAC: 22 Funny: 0 *: 3 Num reads: 4 Avg. read length: 344 Reads contain 1365 bases, 0 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 1 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 56 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1674 +[1] +pp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 56 Contig length: 357 Avg. contig coverage: 1.81 Consensus contains: A: 114 C: 97 G: 53 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 57 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1672 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 57 Contig length: 938 Avg. contig coverage: 1.65 Consensus contains: A: 253 C: 280 G: 185 T: 218 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 517 Reads contain 1549 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 58 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1669 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 58 Contig length: 549 Avg. contig coverage: 2.53 Consensus contains: A: 131 C: 124 G: 172 T: 117 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 3 Avg. read length: 463 Reads contain 1384 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 59 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1666 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 59 Contig length: 602 Avg. contig coverage: 2.2 Consensus contains: A: 156 C: 131 G: 133 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 5 Num reads: 3 Avg. read length: 442 Reads contain 1319 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 60 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1663 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 60 Contig length: 637 Avg. contig coverage: 1.91 Consensus contains: A: 107 C: 187 G: 104 T: 239 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 610 Reads contain 1218 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 61 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1661 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 61 Contig length: 523 Avg. contig coverage: 3.47 Consensus contains: A: 140 C: 112 G: 127 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 3 Num reads: 5 Avg. read length: 363 Reads contain 1808 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 62 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1656 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 62 Contig length: 425 Avg. contig coverage: 2.35 Consensus contains: A: 91 C: 93 G: 151 T: 89 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 333 Reads contain 1001 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 63 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1653 +[1] ++++r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 63 Contig length: 914 Avg. contig coverage: 2.64 Consensus contains: A: 274 C: 201 G: 173 T: 218 N: 0 IUPAC: 42 Funny: 0 *: 6 Num reads: 5 Avg. read length: 483 Reads contain 2401 bases, 0 Ns and 18 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 5 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 63 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1653 +[1] ++ppr RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 63 Contig length: 908 Avg. contig coverage: 1.82 Consensus contains: A: 282 C: 204 G: 174 T: 224 N: 0 IUPAC: 24 Funny: 0 *: 0 Num reads: 3 Avg. read length: 553 Reads contain 1657 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 64 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1650 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 64 Contig length: 448 Avg. contig coverage: 2.26 Consensus contains: A: 100 C: 106 G: 137 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 338 Reads contain 1014 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 65 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1647 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 65 Contig length: 372 Avg. contig coverage: 3.08 Consensus contains: A: 65 C: 78 G: 119 T: 80 N: 0 IUPAC: 29 Funny: 0 *: 1 Num reads: 4 Avg. read length: 286 Reads contain 1141 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 66 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1643 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 66 Contig length: 378 Avg. contig coverage: 2.47 Consensus contains: A: 138 C: 100 G: 54 T: 84 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 3 Avg. read length: 311 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 67 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1640 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 67 Contig length: 1030 Avg. contig coverage: 1.54 Consensus contains: A: 246 C: 212 G: 296 T: 275 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 531 Reads contain 1594 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 68 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1637 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 68 Contig length: 527 Avg. contig coverage: 1.97 Consensus contains: A: 164 C: 125 G: 100 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 520 Reads contain 1040 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 69 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1635 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 69 Contig length: 667 Avg. contig coverage: 2.07 Consensus contains: A: 178 C: 137 G: 166 T: 182 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 460 Reads contain 1373 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 70 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1632 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 70 Contig length: 537 Avg. contig coverage: 1.96 Consensus contains: A: 159 C: 141 G: 119 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 528 Reads contain 1057 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 71 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1630 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 71 Contig length: 502 Avg. contig coverage: 2 Consensus contains: A: 165 C: 112 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 502 Reads contain 1004 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 72 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1628 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 72 Contig length: 369 Avg. contig coverage: 2.61 Consensus contains: A: 95 C: 89 G: 69 T: 110 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 3 Avg. read length: 322 Reads contain 962 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 73 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1625 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 73 Contig length: 333 Avg. contig coverage: 2.61 Consensus contains: A: 88 C: 71 G: 75 T: 95 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 3 Avg. read length: 290 Reads contain 868 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 74 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1622 +[1] +a++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 74 Contig length: 773 Avg. contig coverage: 3.56 Consensus contains: A: 165 C: 190 G: 172 T: 194 N: 0 IUPAC: 46 Funny: 0 *: 6 Num reads: 6 Avg. read length: 459 Reads contain 2726 bases, 5 Ns and 23 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 12 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 74 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1622 +[1] +a+pp+ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 74 Contig length: 770 Avg. contig coverage: 2.31 Consensus contains: A: 175 C: 196 G: 184 T: 205 N: 0 IUPAC: 7 Funny: 0 *: 3 Num reads: 4 Avg. read length: 446 Reads contain 1775 bases, 4 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 75 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1618 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 75 Contig length: 769 Avg. contig coverage: 2.26 Consensus contains: A: 227 C: 170 G: 146 T: 210 N: 0 IUPAC: 8 Funny: 0 *: 8 Num reads: 4 Avg. read length: 436 Reads contain 1734 bases, 0 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 76 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1614 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 76 Contig length: 564 Avg. contig coverage: 1.93 Consensus contains: A: 154 C: 112 G: 126 T: 169 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 544 Reads contain 1088 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 77 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1612 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 77 Contig length: 569 Avg. contig coverage: 2.44 Consensus contains: A: 124 C: 144 G: 142 T: 130 N: 0 IUPAC: 29 Funny: 0 *: 0 Num reads: 3 Avg. read length: 464 Reads contain 1391 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 78 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1609 +[1] +r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 78 Contig length: 482 Avg. contig coverage: 1.81 Consensus contains: A: 119 C: 106 G: 129 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 438 Reads contain 876 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 79 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1607 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 79 Contig length: 519 Avg. contig coverage: 2.23 Consensus contains: A: 158 C: 82 G: 122 T: 137 N: 0 IUPAC: 17 Funny: 0 *: 3 Num reads: 3 Avg. read length: 386 Reads contain 1150 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 80 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1604 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 80 Contig length: 530 Avg. contig coverage: 1.93 Consensus contains: A: 132 C: 126 G: 141 T: 130 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 341 Reads contain 1024 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 81 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1601 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 81 Contig length: 491 Avg. contig coverage: 1.98 Consensus contains: A: 143 C: 84 G: 106 T: 154 N: 1 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 488 Reads contain 972 bases, 4 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 82 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1599 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 82 Contig length: 472 Avg. contig coverage: 1.99 Consensus contains: A: 114 C: 144 G: 84 T: 129 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 470 Reads contain 940 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 83 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1597 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 83 Contig length: 562 Avg. contig coverage: 1.9 Consensus contains: A: 119 C: 138 G: 142 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 536 Reads contain 1069 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 84 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1595 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 84 Contig length: 896 Avg. contig coverage: 1.6 Consensus contains: A: 247 C: 191 G: 210 T: 238 N: 0 IUPAC: 8 Funny: 0 *: 2 Num reads: 3 Avg. read length: 480 Reads contain 1435 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 85 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1592 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 85 Contig length: 568 Avg. contig coverage: 2.51 Consensus contains: A: 136 C: 107 G: 147 T: 150 N: 0 IUPAC: 16 Funny: 0 *: 12 Num reads: 3 Avg. read length: 475 Reads contain 1401 bases, 0 Ns and 25 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 86 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1589 +[1] +++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 86 Contig length: 705 Avg. contig coverage: 2.26 Consensus contains: A: 184 C: 159 G: 175 T: 143 N: 1 IUPAC: 42 Funny: 0 *: 1 Num reads: 4 Avg. read length: 399 Reads contain 1589 bases, 1 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 4 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 86 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1589 +[1] ppp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 86 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 91 C: 100 G: 86 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 87 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1588 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 87 Contig length: 867 Avg. contig coverage: 1.67 Consensus contains: A: 235 C: 162 G: 193 T: 274 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 3 Avg. read length: 482 Reads contain 1445 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 88 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1585 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 88 Contig length: 589 Avg. contig coverage: 2.57 Consensus contains: A: 144 C: 175 G: 114 T: 114 N: 0 IUPAC: 38 Funny: 0 *: 4 Num reads: 4 Avg. read length: 378 Reads contain 1499 bases, 0 Ns and 15 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 2 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 88 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1585 +[1] p+p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 88 Contig length: 454 Avg. contig coverage: 1.42 Consensus contains: A: 131 C: 126 G: 93 T: 102 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 89 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1583 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 89 Contig length: 552 Avg. contig coverage: 1.82 Consensus contains: A: 167 C: 109 G: 142 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 90 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1581 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 90 Contig length: 523 Avg. contig coverage: 1.86 Consensus contains: A: 141 C: 138 G: 115 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 486 Reads contain 972 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 91 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1579 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 91 Contig length: 389 Avg. contig coverage: 2.53 Consensus contains: A: 120 C: 84 G: 93 T: 69 N: 0 IUPAC: 22 Funny: 0 *: 1 Num reads: 3 Avg. read length: 328 Reads contain 980 bases, 3 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 92 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1576 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 92 Contig length: 469 Avg. contig coverage: 1.94 Consensus contains: A: 164 C: 124 G: 75 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 456 Reads contain 913 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 93 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1574 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 93 Contig length: 539 Avg. contig coverage: 1.84 Consensus contains: A: 146 C: 92 G: 133 T: 167 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 496 Reads contain 993 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 94 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1572 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 94 Contig length: 490 Avg. contig coverage: 2 Consensus contains: A: 116 C: 125 G: 90 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 490 Reads contain 979 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 95 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1570 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 95 Contig length: 377 Avg. contig coverage: 2.15 Consensus contains: A: 62 C: 85 G: 116 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 270 Reads contain 811 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 96 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1567 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 96 Contig length: 504 Avg. contig coverage: 1.85 Consensus contains: A: 128 C: 126 G: 91 T: 158 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 467 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 97 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1565 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 97 Contig length: 494 Avg. contig coverage: 1.95 Consensus contains: A: 109 C: 118 G: 127 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 483 Reads contain 965 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 98 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1563 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 98 Contig length: 465 Avg. contig coverage: 1.92 Consensus contains: A: 134 C: 90 G: 118 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 447 Reads contain 895 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 99 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1561 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 99 Contig length: 508 Avg. contig coverage: 1.84 Consensus contains: A: 159 C: 97 G: 128 T: 123 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 467 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1559 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 100 Contig length: 592 Avg. contig coverage: 1.85 Consensus contains: A: 142 C: 121 G: 180 T: 145 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 550 Reads contain 1100 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1557 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 101 Contig length: 505 Avg. contig coverage: 1.88 Consensus contains: A: 139 C: 103 G: 128 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 475 Reads contain 950 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1555 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 102 Contig length: 456 Avg. contig coverage: 1.58 Consensus contains: A: 122 C: 128 G: 73 T: 123 N: 0 IUPAC: 5 Funny: 0 *: 5 Num reads: 2 Avg. read length: 362 Reads contain 718 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1553 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 103 Contig length: 548 Avg. contig coverage: 1.83 Consensus contains: A: 149 C: 119 G: 138 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1551 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 104 Contig length: 492 Avg. contig coverage: 1.94 Consensus contains: A: 132 C: 121 G: 95 T: 140 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 479 Reads contain 957 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1549 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 105 Contig length: 541 Avg. contig coverage: 1.8 Consensus contains: A: 153 C: 126 G: 111 T: 150 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 489 Reads contain 977 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1547 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 106 Contig length: 468 Avg. contig coverage: 1.87 Consensus contains: A: 146 C: 92 G: 82 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 438 Reads contain 876 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1545 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 107 Contig length: 611 Avg. contig coverage: 1.68 Consensus contains: A: 132 C: 203 G: 81 T: 195 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 513 Reads contain 1027 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1543 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 108 Contig length: 457 Avg. contig coverage: 1.93 Consensus contains: A: 113 C: 122 G: 105 T: 115 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 441 Reads contain 883 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1541 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 109 Contig length: 401 Avg. contig coverage: 2 Consensus contains: A: 77 C: 125 G: 102 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 401 Reads contain 802 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1539 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 110 Contig length: 438 Avg. contig coverage: 1.94 Consensus contains: A: 97 C: 114 G: 124 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 425 Reads contain 851 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1537 +[1] +++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 111 Contig length: 735 Avg. contig coverage: 2.4 Consensus contains: A: 176 C: 134 G: 183 T: 201 N: 0 IUPAC: 36 Funny: 0 *: 5 Num reads: 4 Avg. read length: 441 Reads contain 1749 bases, 0 Ns and 16 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1533 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 112 Contig length: 402 Avg. contig coverage: 1.85 Consensus contains: A: 133 C: 91 G: 76 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 372 Reads contain 745 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1531 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 113 Contig length: 437 Avg. contig coverage: 1.96 Consensus contains: A: 101 C: 75 G: 94 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 857 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1529 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 114 Contig length: 589 Avg. contig coverage: 1.91 Consensus contains: A: 143 C: 131 G: 168 T: 132 N: 0 IUPAC: 13 Funny: 0 *: 2 Num reads: 3 Avg. read length: 375 Reads contain 1115 bases, 7 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1526 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 115 Contig length: 446 Avg. contig coverage: 2.41 Consensus contains: A: 122 C: 114 G: 100 T: 108 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 359 Reads contain 1074 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1523 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 116 Contig length: 428 Avg. contig coverage: 1.91 Consensus contains: A: 124 C: 115 G: 88 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 410 Reads contain 820 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1521 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 117 Contig length: 513 Avg. contig coverage: 1.76 Consensus contains: A: 119 C: 129 G: 132 T: 132 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 453 Reads contain 906 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1519 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 118 Contig length: 489 Avg. contig coverage: 1.78 Consensus contains: A: 135 C: 128 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 436 Reads contain 872 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1517 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 119 Contig length: 509 Avg. contig coverage: 1.93 Consensus contains: A: 125 C: 99 G: 140 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 493 Reads contain 983 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1515 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 120 Contig length: 550 Avg. contig coverage: 1.73 Consensus contains: A: 138 C: 176 G: 114 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 477 Reads contain 955 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1513 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 121 Contig length: 540 Avg. contig coverage: 1.72 Consensus contains: A: 124 C: 150 G: 108 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 466 Reads contain 932 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1511 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 122 Contig length: 1056 Avg. contig coverage: 1.43 Consensus contains: A: 309 C: 194 G: 265 T: 284 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 3 Avg. read length: 506 Reads contain 1519 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1508 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 123 Contig length: 502 Avg. contig coverage: 1.82 Consensus contains: A: 123 C: 105 G: 130 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 458 Reads contain 916 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1506 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 124 Contig length: 545 Avg. contig coverage: 1.81 Consensus contains: A: 150 C: 108 G: 132 T: 144 N: 1 IUPAC: 10 Funny: 0 *: 0 Num reads: 2 Avg. read length: 493 Reads contain 984 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1504 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 125 Contig length: 423 Avg. contig coverage: 1.88 Consensus contains: A: 94 C: 97 G: 117 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 399 Reads contain 798 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1502 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 126 Contig length: 429 Avg. contig coverage: 1.89 Consensus contains: A: 139 C: 93 G: 104 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 407 Reads contain 815 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1500 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 127 Contig length: 397 Avg. contig coverage: 2 Consensus contains: A: 142 C: 92 G: 64 T: 98 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 397 Reads contain 794 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1498 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 128 Contig length: 587 Avg. contig coverage: 1.8 Consensus contains: A: 152 C: 135 G: 113 T: 178 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 531 Reads contain 1062 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1496 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 129 Contig length: 379 Avg. contig coverage: 1.99 Consensus contains: A: 64 C: 120 G: 99 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 377 Reads contain 754 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1494 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 130 Contig length: 421 Avg. contig coverage: 1.88 Consensus contains: A: 114 C: 119 G: 67 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 397 Reads contain 793 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1492 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 131 Contig length: 435 Avg. contig coverage: 1.88 Consensus contains: A: 125 C: 93 G: 98 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 409 Reads contain 819 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1490 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 132 Contig length: 508 Avg. contig coverage: 1.72 Consensus contains: A: 159 C: 145 G: 88 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 438 Reads contain 875 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1488 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 133 Contig length: 929 Avg. contig coverage: 2.07 Consensus contains: A: 213 C: 208 G: 292 T: 189 N: 0 IUPAC: 16 Funny: 0 *: 11 Num reads: 5 Avg. read length: 385 Reads contain 1894 bases, 0 Ns and 34 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1483 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 134 Contig length: 607 Avg. contig coverage: 1.58 Consensus contains: A: 132 C: 155 G: 162 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 480 Reads contain 961 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1481 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 135 Contig length: 599 Avg. contig coverage: 1.79 Consensus contains: A: 118 C: 145 G: 173 T: 150 N: 0 IUPAC: 12 Funny: 0 *: 1 Num reads: 3 Avg. read length: 358 Reads contain 1074 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1478 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 136 Contig length: 379 Avg. contig coverage: 2.05 Consensus contains: A: 98 C: 102 G: 71 T: 96 N: 0 IUPAC: 9 Funny: 0 *: 3 Num reads: 3 Avg. read length: 259 Reads contain 772 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1475 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 137 Contig length: 474 Avg. contig coverage: 1.8 Consensus contains: A: 98 C: 96 G: 152 T: 119 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 852 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1473 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 138 Contig length: 668 Avg. contig coverage: 1.76 Consensus contains: A: 172 C: 128 G: 156 T: 188 N: 0 IUPAC: 22 Funny: 0 *: 2 Num reads: 3 Avg. read length: 392 Reads contain 1167 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1470 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 139 Contig length: 360 Avg. contig coverage: 1.96 Consensus contains: A: 67 C: 88 G: 82 T: 121 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 354 Reads contain 708 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1468 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 140 Contig length: 386 Avg. contig coverage: 1.9 Consensus contains: A: 93 C: 86 G: 119 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 368 Reads contain 735 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1466 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 141 Contig length: 466 Avg. contig coverage: 1.93 Consensus contains: A: 131 C: 105 G: 119 T: 109 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 452 Reads contain 900 bases, 1 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1464 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 142 Contig length: 471 Avg. contig coverage: 1.71 Consensus contains: A: 159 C: 122 G: 56 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 404 Reads contain 809 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1462 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 143 Contig length: 337 Avg. contig coverage: 2 Consensus contains: A: 78 C: 83 G: 68 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 337 Reads contain 674 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1460 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 144 Contig length: 418 Avg. contig coverage: 1.89 Consensus contains: A: 123 C: 95 G: 108 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 397 Reads contain 791 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1458 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 145 Contig length: 571 Avg. contig coverage: 1.61 Consensus contains: A: 161 C: 143 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 462 Reads contain 921 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1456 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 146 Contig length: 471 Avg. contig coverage: 1.81 Consensus contains: A: 120 C: 110 G: 111 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 855 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1454 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 147 Contig length: 351 Avg. contig coverage: 1.96 Consensus contains: A: 111 C: 86 G: 45 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 344 Reads contain 689 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1452 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 148 Contig length: 368 Avg. contig coverage: 1.97 Consensus contains: A: 90 C: 54 G: 86 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 364 Reads contain 725 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1450 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 149 Contig length: 670 Avg. contig coverage: 1.82 Consensus contains: A: 195 C: 130 G: 164 T: 157 N: 0 IUPAC: 22 Funny: 0 *: 2 Num reads: 3 Avg. read length: 408 Reads contain 1220 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1447 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 150 Contig length: 386 Avg. contig coverage: 1.9 Consensus contains: A: 90 C: 84 G: 106 T: 102 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 367 Reads contain 731 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1445 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 151 Contig length: 592 Avg. contig coverage: 1.58 Consensus contains: A: 146 C: 96 G: 166 T: 183 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 468 Reads contain 937 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1443 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 152 Contig length: 324 Avg. contig coverage: 2 Consensus contains: A: 119 C: 74 G: 48 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 324 Reads contain 648 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1441 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 153 Contig length: 334 Avg. contig coverage: 1.99 Consensus contains: A: 106 C: 87 G: 60 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 333 Reads contain 665 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1439 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 154 Contig length: 338 Avg. contig coverage: 1.98 Consensus contains: A: 87 C: 83 G: 79 T: 88 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 335 Reads contain 670 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1437 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 155 Contig length: 456 Avg. contig coverage: 1.94 Consensus contains: A: 118 C: 87 G: 104 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 443 Reads contain 880 bases, 3 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1435 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 156 Contig length: 356 Avg. contig coverage: 1.89 Consensus contains: A: 87 C: 77 G: 124 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 337 Reads contain 675 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1433 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 157 Contig length: 624 Avg. contig coverage: 1.53 Consensus contains: A: 133 C: 152 G: 132 T: 206 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 479 Reads contain 959 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1431 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 158 Contig length: 395 Avg. contig coverage: 1.93 Consensus contains: A: 105 C: 99 G: 97 T: 93 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 382 Reads contain 765 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1429 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 159 Contig length: 418 Avg. contig coverage: 1.82 Consensus contains: A: 109 C: 95 G: 91 T: 119 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 2 Avg. read length: 381 Reads contain 763 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1427 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 160 Contig length: 698 Avg. contig coverage: 1.91 Consensus contains: A: 208 C: 178 G: 121 T: 142 N: 0 IUPAC: 45 Funny: 0 *: 4 Num reads: 3 Avg. read length: 445 Reads contain 1324 bases, 1 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1424 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 161 Contig length: 524 Avg. contig coverage: 1.79 Consensus contains: A: 117 C: 148 G: 122 T: 126 N: 0 IUPAC: 10 Funny: 0 *: 1 Num reads: 2 Avg. read length: 470 Reads contain 938 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1422 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 162 Contig length: 547 Avg. contig coverage: 1.57 Consensus contains: A: 150 C: 145 G: 104 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 430 Reads contain 860 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1420 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 163 Contig length: 384 Avg. contig coverage: 1.94 Consensus contains: A: 118 C: 54 G: 74 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 374 Reads contain 747 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1418 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 164 Contig length: 334 Avg. contig coverage: 1.99 Consensus contains: A: 145 C: 47 G: 69 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 333 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1416 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 165 Contig length: 655 Avg. contig coverage: 1.5 Consensus contains: A: 216 C: 144 G: 124 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 493 Reads contain 983 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1414 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 166 Contig length: 521 Avg. contig coverage: 1.81 Consensus contains: A: 128 C: 123 G: 134 T: 132 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 316 Reads contain 944 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1411 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 167 Contig length: 307 Avg. contig coverage: 2 Consensus contains: A: 68 C: 90 G: 62 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 307 Reads contain 614 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1409 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 168 Contig length: 577 Avg. contig coverage: 1.7 Consensus contains: A: 158 C: 116 G: 140 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 492 Reads contain 984 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1407 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 169 Contig length: 281 Avg. contig coverage: 1.96 Consensus contains: A: 70 C: 58 G: 79 T: 70 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 276 Reads contain 551 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1405 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 170 Contig length: 668 Avg. contig coverage: 1.66 Consensus contains: A: 169 C: 167 G: 145 T: 183 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 556 Reads contain 1107 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1403 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 171 Contig length: 636 Avg. contig coverage: 1.58 Consensus contains: A: 179 C: 157 G: 106 T: 188 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1401 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 172 Contig length: 530 Avg. contig coverage: 1.59 Consensus contains: A: 161 C: 119 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 422 Reads contain 843 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1399 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 173 Contig length: 444 Avg. contig coverage: 1.9 Consensus contains: A: 153 C: 101 G: 73 T: 114 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 424 Reads contain 845 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1397 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 174 Contig length: 423 Avg. contig coverage: 1.76 Consensus contains: A: 135 C: 96 G: 102 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 372 Reads contain 744 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1395 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 175 Contig length: 520 Avg. contig coverage: 2.1 Consensus contains: A: 104 C: 113 G: 122 T: 149 N: 0 IUPAC: 27 Funny: 0 *: 5 Num reads: 3 Avg. read length: 365 Reads contain 1086 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1392 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 176 Contig length: 596 Avg. contig coverage: 1.6 Consensus contains: A: 160 C: 155 G: 108 T: 170 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 479 Reads contain 957 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1390 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 177 Contig length: 712 Avg. contig coverage: 1.81 Consensus contains: A: 247 C: 175 G: 104 T: 174 N: 0 IUPAC: 8 Funny: 0 *: 4 Num reads: 3 Avg. read length: 430 Reads contain 1277 bases, 4 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1387 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 178 Contig length: 441 Avg. contig coverage: 1.71 Consensus contains: A: 108 C: 77 G: 132 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 379 Reads contain 758 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1385 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 179 Contig length: 395 Avg. contig coverage: 2.47 Consensus contains: A: 124 C: 110 G: 41 T: 115 N: 1 IUPAC: 0 Funny: 0 *: 4 Num reads: 3 Avg. read length: 326 Reads contain 969 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1382 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 180 Contig length: 330 Avg. contig coverage: 2 Consensus contains: A: 82 C: 65 G: 103 T: 78 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 330 Reads contain 659 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1380 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 181 Contig length: 362 Avg. contig coverage: 1.8 Consensus contains: A: 117 C: 99 G: 48 T: 97 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 327 Reads contain 654 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1378 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 182 Contig length: 480 Avg. contig coverage: 1.62 Consensus contains: A: 119 C: 108 G: 111 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 389 Reads contain 778 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1376 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 183 Contig length: 395 Avg. contig coverage: 1.77 Consensus contains: A: 117 C: 103 G: 76 T: 96 N: 1 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 351 Reads contain 699 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1374 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 184 Contig length: 353 Avg. contig coverage: 1.86 Consensus contains: A: 91 C: 66 G: 94 T: 98 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 329 Reads contain 657 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1372 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 185 Contig length: 524 Avg. contig coverage: 1.58 Consensus contains: A: 116 C: 84 G: 179 T: 143 N: 1 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 415 Reads contain 827 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1370 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 186 Contig length: 765 Avg. contig coverage: 1.65 Consensus contains: A: 198 C: 175 G: 180 T: 186 N: 2 IUPAC: 23 Funny: 0 *: 1 Num reads: 3 Avg. read length: 421 Reads contain 1256 bases, 2 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1367 +[1] p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 187 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 86 C: 110 G: 70 T: 46 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1366 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 188 Contig length: 368 Avg. contig coverage: 1.85 Consensus contains: A: 84 C: 89 G: 84 T: 110 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 340 Reads contain 679 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1364 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 189 Contig length: 421 Avg. contig coverage: 1.65 Consensus contains: A: 112 C: 119 G: 82 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 348 Reads contain 697 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1362 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 190 Contig length: 399 Avg. contig coverage: 1.97 Consensus contains: A: 89 C: 83 G: 112 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 4 Num reads: 2 Avg. read length: 394 Reads contain 780 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1360 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 191 Contig length: 301 Avg. contig coverage: 2 Consensus contains: A: 91 C: 68 G: 52 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 301 Reads contain 601 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1358 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 192 Contig length: 596 Avg. contig coverage: 1.64 Consensus contains: A: 101 C: 206 G: 160 T: 119 N: 0 IUPAC: 10 Funny: 0 *: 0 Num reads: 2 Avg. read length: 490 Reads contain 979 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1356 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 193 Contig length: 861 Avg. contig coverage: 1.4 Consensus contains: A: 273 C: 192 G: 176 T: 214 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 3 Avg. read length: 403 Reads contain 1208 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1353 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 194 Contig length: 439 Avg. contig coverage: 1.83 Consensus contains: A: 123 C: 131 G: 77 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 403 Reads contain 806 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1351 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 195 Contig length: 676 Avg. contig coverage: 1.86 Consensus contains: A: 172 C: 152 G: 159 T: 170 N: 0 IUPAC: 20 Funny: 0 *: 3 Num reads: 2 Avg. read length: 632 Reads contain 1247 bases, 7 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1349 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 196 Contig length: 275 Avg. contig coverage: 2 Consensus contains: A: 81 C: 53 G: 77 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 275 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1347 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 197 Contig length: 595 Avg. contig coverage: 1.76 Consensus contains: A: 158 C: 155 G: 111 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 1 Num reads: 2 Avg. read length: 525 Reads contain 1048 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1345 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 198 Contig length: 402 Avg. contig coverage: 1.7 Consensus contains: A: 93 C: 81 G: 97 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 342 Reads contain 682 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1343 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 199 Contig length: 751 Avg. contig coverage: 1.34 Consensus contains: A: 203 C: 147 G: 179 T: 222 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1007 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1341 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 200 Contig length: 402 Avg. contig coverage: 1.96 Consensus contains: A: 94 C: 98 G: 80 T: 126 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 2 Avg. read length: 395 Reads contain 790 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1339 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 201 Contig length: 418 Avg. contig coverage: 1.96 Consensus contains: A: 90 C: 74 G: 143 T: 106 N: 0 IUPAC: 4 Funny: 0 *: 1 Num reads: 2 Avg. read length: 411 Reads contain 819 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1337 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 202 Contig length: 422 Avg. contig coverage: 1.67 Consensus contains: A: 132 C: 134 G: 55 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 352 Reads contain 704 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1335 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 203 Contig length: 664 Avg. contig coverage: 1.46 Consensus contains: A: 181 C: 179 G: 141 T: 161 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 487 Reads contain 975 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1333 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 204 Contig length: 502 Avg. contig coverage: 1.57 Consensus contains: A: 132 C: 115 G: 95 T: 157 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 395 Reads contain 789 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1331 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 205 Contig length: 438 Avg. contig coverage: 1.59 Consensus contains: A: 123 C: 127 G: 92 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 349 Reads contain 698 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1329 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 206 Contig length: 544 Avg. contig coverage: 1.53 Consensus contains: A: 179 C: 125 G: 100 T: 139 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 418 Reads contain 836 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1327 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 207 Contig length: 462 Avg. contig coverage: 1.53 Consensus contains: A: 124 C: 114 G: 102 T: 120 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 355 Reads contain 709 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1325 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 208 Contig length: 503 Avg. contig coverage: 1.9 Consensus contains: A: 138 C: 144 G: 98 T: 119 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 478 Reads contain 953 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1323 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 209 Contig length: 511 Avg. contig coverage: 1.49 Consensus contains: A: 132 C: 128 G: 108 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 383 Reads contain 765 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1321 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 210 Contig length: 450 Avg. contig coverage: 1.56 Consensus contains: A: 128 C: 119 G: 98 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 352 Reads contain 704 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1319 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 211 Contig length: 550 Avg. contig coverage: 1.43 Consensus contains: A: 204 C: 138 G: 81 T: 125 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 395 Reads contain 788 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1317 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 212 Contig length: 380 Avg. contig coverage: 1.66 Consensus contains: A: 103 C: 92 G: 81 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 316 Reads contain 632 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1315 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 213 Contig length: 467 Avg. contig coverage: 2.01 Consensus contains: A: 110 C: 123 G: 94 T: 114 N: 0 IUPAC: 25 Funny: 0 *: 1 Num reads: 3 Avg. read length: 314 Reads contain 939 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1312 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 214 Contig length: 505 Avg. contig coverage: 1.82 Consensus contains: A: 165 C: 91 G: 91 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 460 Reads contain 919 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1310 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 215 Contig length: 605 Avg. contig coverage: 1.56 Consensus contains: A: 185 C: 132 G: 117 T: 167 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 3 Avg. read length: 315 Reads contain 941 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1307 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 216 Contig length: 602 Avg. contig coverage: 1.63 Consensus contains: A: 158 C: 147 G: 123 T: 164 N: 1 IUPAC: 6 Funny: 0 *: 3 Num reads: 2 Avg. read length: 492 Reads contain 981 bases, 1 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1305 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 217 Contig length: 476 Avg. contig coverage: 1.85 Consensus contains: A: 111 C: 119 G: 113 T: 129 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 442 Reads contain 881 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1303 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 218 Contig length: 315 Avg. contig coverage: 1.86 Consensus contains: A: 74 C: 79 G: 94 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 294 Reads contain 585 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1301 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 219 Contig length: 475 Avg. contig coverage: 1.76 Consensus contains: A: 125 C: 101 G: 140 T: 106 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 2 Avg. read length: 419 Reads contain 836 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1299 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 220 Contig length: 612 Avg. contig coverage: 1.37 Consensus contains: A: 154 C: 168 G: 130 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 281 Reads contain 844 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1296 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 221 Contig length: 619 Avg. contig coverage: 1.62 Consensus contains: A: 146 C: 142 G: 161 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 2 Avg. read length: 504 Reads contain 1007 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1294 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 222 Contig length: 538 Avg. contig coverage: 1.77 Consensus contains: A: 153 C: 112 G: 132 T: 120 N: 0 IUPAC: 18 Funny: 0 *: 3 Num reads: 2 Avg. read length: 477 Reads contain 949 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1292 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 223 Contig length: 491 Avg. contig coverage: 1.51 Consensus contains: A: 135 C: 144 G: 108 T: 98 N: 3 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 371 Reads contain 737 bases, 4 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1290 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 224 Contig length: 842 Avg. contig coverage: 1.27 Consensus contains: A: 260 C: 172 G: 170 T: 240 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 537 Reads contain 1074 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1288 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 225 Contig length: 385 Avg. contig coverage: 1.74 Consensus contains: A: 114 C: 103 G: 76 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 336 Reads contain 671 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1286 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 226 Contig length: 275 Avg. contig coverage: 1.83 Consensus contains: A: 101 C: 60 G: 57 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 252 Reads contain 504 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1284 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 227 Contig length: 354 Avg. contig coverage: 1.62 Consensus contains: A: 91 C: 69 G: 85 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 287 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1282 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 228 Contig length: 522 Avg. contig coverage: 1.41 Consensus contains: A: 141 C: 106 G: 120 T: 155 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 370 Reads contain 741 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1280 +[1] a+ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 229 Contig length: 393 Avg. contig coverage: 1.26 Consensus contains: A: 132 C: 88 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 249 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1278 +[1] p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 230 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 62 C: 52 G: 75 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1277 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 231 Contig length: 523 Avg. contig coverage: 1.97 Consensus contains: A: 157 C: 61 G: 124 T: 166 N: 0 IUPAC: 11 Funny: 0 *: 4 Num reads: 2 Avg. read length: 517 Reads contain 1026 bases, 0 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1275 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 232 Contig length: 393 Avg. contig coverage: 1.57 Consensus contains: A: 113 C: 103 G: 82 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 309 Reads contain 617 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1273 +[1] +++++rrr RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 233 Contig length: 626 Avg. contig coverage: 2.96 Consensus contains: A: 138 C: 166 G: 160 T: 137 N: 0 IUPAC: 21 Funny: 0 *: 4 Num reads: 6 Avg. read length: 309 Reads contain 1836 bases, 0 Ns and 18 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1267 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 234 Contig length: 299 Avg. contig coverage: 1.69 Consensus contains: A: 102 C: 82 G: 36 T: 78 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 254 Reads contain 507 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1265 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 235 Contig length: 443 Avg. contig coverage: 1.73 Consensus contains: A: 131 C: 111 G: 89 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 384 Reads contain 766 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1263 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 236 Contig length: 731 Avg. contig coverage: 1.36 Consensus contains: A: 186 C: 164 G: 176 T: 200 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 2 Avg. read length: 500 Reads contain 996 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1261 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 237 Contig length: 373 Avg. contig coverage: 1.53 Consensus contains: A: 150 C: 86 G: 37 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 286 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1259 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 238 Contig length: 461 Avg. contig coverage: 1.93 Consensus contains: A: 145 C: 93 G: 102 T: 103 N: 0 IUPAC: 14 Funny: 0 *: 4 Num reads: 2 Avg. read length: 446 Reads contain 888 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1257 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 239 Contig length: 486 Avg. contig coverage: 1.42 Consensus contains: A: 146 C: 91 G: 129 T: 116 N: 3 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 346 Reads contain 690 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1255 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 240 Contig length: 448 Avg. contig coverage: 1.42 Consensus contains: A: 136 C: 82 G: 77 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 318 Reads contain 637 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1253 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 241 Contig length: 518 Avg. contig coverage: 1.81 Consensus contains: A: 164 C: 86 G: 131 T: 118 N: 0 IUPAC: 15 Funny: 0 *: 4 Num reads: 2 Avg. read length: 470 Reads contain 934 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1251 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 242 Contig length: 307 Avg. contig coverage: 1.93 Consensus contains: A: 91 C: 95 G: 54 T: 64 N: 1 IUPAC: 0 Funny: 0 *: 2 Num reads: 3 Avg. read length: 197 Reads contain 588 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1248 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 243 Contig length: 451 Avg. contig coverage: 1.64 Consensus contains: A: 122 C: 115 G: 111 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 370 Reads contain 740 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1246 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 244 Contig length: 390 Avg. contig coverage: 1.49 Consensus contains: A: 76 C: 106 G: 109 T: 97 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 291 Reads contain 582 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1244 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 245 Contig length: 435 Avg. contig coverage: 1.98 Consensus contains: A: 104 C: 94 G: 123 T: 91 N: 0 IUPAC: 23 Funny: 0 *: 0 Num reads: 3 Avg. read length: 288 Reads contain 861 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1241 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 246 Contig length: 496 Avg. contig coverage: 1.43 Consensus contains: A: 158 C: 121 G: 106 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 356 Reads contain 709 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1239 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 247 Contig length: 388 Avg. contig coverage: 2.15 Consensus contains: A: 99 C: 111 G: 93 T: 77 N: 0 IUPAC: 5 Funny: 0 *: 3 Num reads: 3 Avg. read length: 278 Reads contain 826 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1236 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 248 Contig length: 507 Avg. contig coverage: 1.42 Consensus contains: A: 149 C: 119 G: 102 T: 132 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 2 Avg. read length: 360 Reads contain 716 bases, 2 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1234 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 249 Contig length: 642 Avg. contig coverage: 1.42 Consensus contains: A: 176 C: 144 G: 154 T: 159 N: 3 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 457 Reads contain 908 bases, 3 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1232 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 250 Contig length: 303 Avg. contig coverage: 1.98 Consensus contains: A: 85 C: 37 G: 105 T: 74 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 300 Reads contain 597 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1230 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 251 Contig length: 486 Avg. contig coverage: 1.61 Consensus contains: A: 117 C: 133 G: 105 T: 122 N: 0 IUPAC: 3 Funny: 0 *: 6 Num reads: 2 Avg. read length: 392 Reads contain 778 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1228 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 252 Contig length: 564 Avg. contig coverage: 1.74 Consensus contains: A: 112 C: 150 G: 120 T: 151 N: 2 IUPAC: 29 Funny: 0 *: 0 Num reads: 2 Avg. read length: 492 Reads contain 978 bases, 4 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1226 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 253 Contig length: 816 Avg. contig coverage: 1.33 Consensus contains: A: 195 C: 189 G: 234 T: 192 N: 0 IUPAC: 2 Funny: 0 *: 4 Num reads: 2 Avg. read length: 545 Reads contain 1086 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1224 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 254 Contig length: 764 Avg. contig coverage: 1.21 Consensus contains: A: 209 C: 158 G: 184 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 465 Reads contain 931 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1222 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 255 Contig length: 519 Avg. contig coverage: 1.31 Consensus contains: A: 125 C: 133 G: 131 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 342 Reads contain 685 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1220 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 256 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 129 C: 107 G: 113 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1219 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 257 Contig length: 479 Avg. contig coverage: 1.46 Consensus contains: A: 94 C: 91 G: 142 T: 149 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 2 Avg. read length: 352 Reads contain 703 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1217 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 258 Contig length: 430 Avg. contig coverage: 1.92 Consensus contains: A: 82 C: 106 G: 120 T: 119 N: 1 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 414 Reads contain 824 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1215 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 259 Contig length: 708 Avg. contig coverage: 1.24 Consensus contains: A: 167 C: 119 G: 211 T: 211 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 439 Reads contain 879 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1213 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 260 Contig length: 238 Avg. contig coverage: 1.88 Consensus contains: A: 69 C: 80 G: 38 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 224 Reads contain 449 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1211 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 261 Contig length: 375 Avg. contig coverage: 1.48 Consensus contains: A: 102 C: 74 G: 91 T: 106 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 277 Reads contain 554 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1209 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 262 Contig length: 412 Avg. contig coverage: 1.51 Consensus contains: A: 97 C: 85 G: 117 T: 111 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 312 Reads contain 622 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1207 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 263 Contig length: 561 Avg. contig coverage: 1.31 Consensus contains: A: 175 C: 132 G: 90 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 367 Reads contain 735 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1205 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 264 Contig length: 223 Avg. contig coverage: 1.73 Consensus contains: A: 56 C: 35 G: 73 T: 58 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 193 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1203 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 265 Contig length: 275 Avg. contig coverage: 1.78 Consensus contains: A: 76 C: 63 G: 53 T: 80 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 245 Reads contain 489 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1201 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 266 Contig length: 847 Avg. contig coverage: 1.39 Consensus contains: A: 225 C: 187 G: 178 T: 244 N: 0 IUPAC: 11 Funny: 0 *: 2 Num reads: 3 Avg. read length: 393 Reads contain 1174 bases, 2 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1198 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 267 Contig length: 429 Avg. contig coverage: 1.36 Consensus contains: A: 145 C: 89 G: 74 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 292 Reads contain 585 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1196 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 268 Contig length: 473 Avg. contig coverage: 1.51 Consensus contains: A: 115 C: 117 G: 115 T: 120 N: 0 IUPAC: 3 Funny: 0 *: 3 Num reads: 2 Avg. read length: 357 Reads contain 712 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1194 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 269 Contig length: 379 Avg. contig coverage: 1.92 Consensus contains: A: 94 C: 88 G: 89 T: 94 N: 0 IUPAC: 12 Funny: 0 *: 2 Num reads: 2 Avg. read length: 365 Reads contain 723 bases, 1 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1192 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 270 Contig length: 322 Avg. contig coverage: 1.9 Consensus contains: A: 67 C: 79 G: 85 T: 51 N: 0 IUPAC: 38 Funny: 0 *: 2 Num reads: 2 Avg. read length: 307 Reads contain 610 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1190 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 271 Contig length: 531 Avg. contig coverage: 1.4 Consensus contains: A: 142 C: 103 G: 106 T: 173 N: 0 IUPAC: 6 Funny: 0 *: 1 Num reads: 2 Avg. read length: 373 Reads contain 745 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1188 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 272 Contig length: 539 Avg. contig coverage: 1.31 Consensus contains: A: 131 C: 157 G: 138 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 355 Reads contain 710 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1186 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 273 Contig length: 448 Avg. contig coverage: 1.51 Consensus contains: A: 118 C: 84 G: 110 T: 121 N: 0 IUPAC: 14 Funny: 0 *: 1 Num reads: 2 Avg. read length: 339 Reads contain 678 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1184 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 274 Contig length: 510 Avg. contig coverage: 1.53 Consensus contains: A: 158 C: 97 G: 115 T: 138 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 391 Reads contain 782 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1182 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 275 Contig length: 501 Avg. contig coverage: 1.83 Consensus contains: A: 140 C: 129 G: 78 T: 128 N: 0 IUPAC: 22 Funny: 0 *: 4 Num reads: 2 Avg. read length: 460 Reads contain 913 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1180 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 276 Contig length: 396 Avg. contig coverage: 1.42 Consensus contains: A: 87 C: 84 G: 123 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 283 Reads contain 566 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1178 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 277 Contig length: 254 Avg. contig coverage: 1.56 Consensus contains: A: 49 C: 42 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 198 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1176 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 278 Contig length: 623 Avg. contig coverage: 1.67 Consensus contains: A: 179 C: 150 G: 127 T: 150 N: 0 IUPAC: 12 Funny: 0 *: 5 Num reads: 2 Avg. read length: 520 Reads contain 1031 bases, 1 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1174 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 279 Contig length: 269 Avg. contig coverage: 1.78 Consensus contains: A: 103 C: 59 G: 47 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 240 Reads contain 479 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1172 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 280 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 49 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1171 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 281 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 98 C: 37 G: 13 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1170 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 282 Contig length: 509 Avg. contig coverage: 1.3 Consensus contains: A: 139 C: 114 G: 119 T: 136 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 333 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1168 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 283 Contig length: 313 Avg. contig coverage: 1.47 Consensus contains: A: 111 C: 56 G: 66 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 231 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1166 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 284 Contig length: 344 Avg. contig coverage: 1.54 Consensus contains: A: 106 C: 83 G: 74 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 266 Reads contain 531 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1164 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 285 Contig length: 319 Avg. contig coverage: 1.66 Consensus contains: A: 115 C: 64 G: 55 T: 72 N: 0 IUPAC: 13 Funny: 0 *: 0 Num reads: 2 Avg. read length: 266 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1162 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 286 Contig length: 562 Avg. contig coverage: 1.59 Consensus contains: A: 144 C: 119 G: 148 T: 144 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 447 Reads contain 891 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1160 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 287 Contig length: 850 Avg. contig coverage: 1.19 Consensus contains: A: 230 C: 153 G: 219 T: 248 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 509 Reads contain 1017 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1158 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 288 Contig length: 276 Avg. contig coverage: 1.27 Consensus contains: A: 73 C: 58 G: 86 T: 56 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 2 Avg. read length: 176 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1156 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 289 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 164 C: 91 G: 71 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1155 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 290 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 113 C: 84 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1154 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 291 Contig length: 460 Avg. contig coverage: 1.4 Consensus contains: A: 107 C: 91 G: 139 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1152 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 292 Contig length: 341 Avg. contig coverage: 1.95 Consensus contains: A: 91 C: 94 G: 58 T: 88 N: 0 IUPAC: 3 Funny: 0 *: 7 Num reads: 2 Avg. read length: 332 Reads contain 656 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1150 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 293 Contig length: 433 Avg. contig coverage: 1.66 Consensus contains: A: 113 C: 56 G: 115 T: 134 N: 0 IUPAC: 5 Funny: 0 *: 10 Num reads: 2 Avg. read length: 360 Reads contain 708 bases, 2 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1148 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 294 Contig length: 560 Avg. contig coverage: 1.4 Consensus contains: A: 181 C: 135 G: 112 T: 119 N: 1 IUPAC: 11 Funny: 0 *: 1 Num reads: 2 Avg. read length: 392 Reads contain 780 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1146 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 295 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 120 C: 130 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1145 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 296 Contig length: 182 Avg. contig coverage: 1 Consensus contains: A: 44 C: 35 G: 60 T: 43 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 182 Reads contain 182 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1144 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 297 Contig length: 331 Avg. contig coverage: 1 Consensus contains: A: 87 C: 64 G: 88 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 331 Reads contain 331 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1143 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 298 Contig length: 334 Avg. contig coverage: 1.45 Consensus contains: A: 77 C: 49 G: 120 T: 87 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 243 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1141 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 299 Contig length: 213 Avg. contig coverage: 1.55 Consensus contains: A: 59 C: 98 G: 24 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 165 Reads contain 331 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1139 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 300 Contig length: 328 Avg. contig coverage: 1.34 Consensus contains: A: 97 C: 74 G: 67 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 221 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1137 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 301 Contig length: 578 Avg. contig coverage: 1 Consensus contains: A: 169 C: 135 G: 101 T: 170 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 578 Reads contain 575 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1136 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 302 Contig length: 733 Avg. contig coverage: 1.29 Consensus contains: A: 230 C: 211 G: 138 T: 142 N: 1 IUPAC: 7 Funny: 0 *: 4 Num reads: 3 Avg. read length: 316 Reads contain 943 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1133 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 303 Contig length: 274 Avg. contig coverage: 1.5 Consensus contains: A: 38 C: 90 G: 69 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 206 Reads contain 410 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1131 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 304 Contig length: 587 Avg. contig coverage: 1.44 Consensus contains: A: 150 C: 147 G: 115 T: 166 N: 0 IUPAC: 6 Funny: 0 *: 3 Num reads: 2 Avg. read length: 425 Reads contain 844 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1129 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 305 Contig length: 632 Avg. contig coverage: 1.43 Consensus contains: A: 164 C: 154 G: 120 T: 169 N: 1 IUPAC: 22 Funny: 0 *: 2 Num reads: 2 Avg. read length: 452 Reads contain 898 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1127 +[1] +p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 306 Contig length: 439 Avg. contig coverage: 1.67 Consensus contains: A: 93 C: 106 G: 101 T: 111 N: 0 IUPAC: 28 Funny: 0 *: 0 Num reads: 2 Avg. read length: 367 Reads contain 734 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1125 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 307 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 149 C: 104 G: 80 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1124 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 308 Contig length: 481 Avg. contig coverage: 1.64 Consensus contains: A: 106 C: 121 G: 126 T: 115 N: 0 IUPAC: 7 Funny: 0 *: 6 Num reads: 3 Avg. read length: 263 Reads contain 779 bases, 1 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1121 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 309 Contig length: 541 Avg. contig coverage: 1.36 Consensus contains: A: 131 C: 121 G: 142 T: 140 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 370 Reads contain 737 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1119 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 310 Contig length: 700 Avg. contig coverage: 1.14 Consensus contains: A: 202 C: 170 G: 117 T: 211 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 400 Reads contain 800 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1117 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 311 Contig length: 985 Avg. contig coverage: 1.11 Consensus contains: A: 252 C: 249 G: 248 T: 236 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 551 Reads contain 1101 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1115 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 312 Contig length: 695 Avg. contig coverage: 1.22 Consensus contains: A: 158 C: 164 G: 170 T: 201 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 424 Reads contain 846 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1113 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 313 Contig length: 199 Avg. contig coverage: 1.87 Consensus contains: A: 46 C: 50 G: 52 T: 49 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 186 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1111 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 314 Contig length: 442 Avg. contig coverage: 1.26 Consensus contains: A: 125 C: 62 G: 86 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 278 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1109 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 315 Contig length: 446 Avg. contig coverage: 1.21 Consensus contains: A: 114 C: 100 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 272 Reads contain 542 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1107 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 316 Contig length: 625 Avg. contig coverage: 1.3 Consensus contains: A: 166 C: 126 G: 156 T: 167 N: 1 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 408 Reads contain 816 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1105 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 317 Contig length: 354 Avg. contig coverage: 1.37 Consensus contains: A: 119 C: 67 G: 70 T: 94 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 243 Reads contain 484 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1103 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 318 Contig length: 821 Avg. contig coverage: 1.3 Consensus contains: A: 226 C: 175 G: 175 T: 226 N: 1 IUPAC: 15 Funny: 0 *: 3 Num reads: 2 Avg. read length: 535 Reads contain 1067 bases, 1 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1101 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 319 Contig length: 623 Avg. contig coverage: 1.13 Consensus contains: A: 208 C: 147 G: 134 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 353 Reads contain 707 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1099 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 320 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 56 C: 53 G: 57 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1098 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 321 Contig length: 394 Avg. contig coverage: 1.56 Consensus contains: A: 101 C: 58 G: 136 T: 95 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 309 Reads contain 614 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1096 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 322 Contig length: 645 Avg. contig coverage: 1.35 Consensus contains: A: 164 C: 173 G: 136 T: 153 N: 0 IUPAC: 18 Funny: 0 *: 1 Num reads: 2 Avg. read length: 435 Reads contain 867 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1094 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 323 Contig length: 504 Avg. contig coverage: 1.36 Consensus contains: A: 113 C: 117 G: 132 T: 132 N: 0 IUPAC: 10 Funny: 0 *: 0 Num reads: 2 Avg. read length: 344 Reads contain 687 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1092 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 324 Contig length: 309 Avg. contig coverage: 1.37 Consensus contains: A: 90 C: 64 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 212 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1090 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 325 Contig length: 384 Avg. contig coverage: 1.39 Consensus contains: A: 136 C: 90 G: 66 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 268 Reads contain 534 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1088 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 326 Contig length: 471 Avg. contig coverage: 1.5 Consensus contains: A: 149 C: 88 G: 117 T: 102 N: 0 IUPAC: 10 Funny: 0 *: 5 Num reads: 2 Avg. read length: 354 Reads contain 702 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1086 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 327 Contig length: 503 Avg. contig coverage: 1.27 Consensus contains: A: 145 C: 101 G: 114 T: 137 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 321 Reads contain 640 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1084 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 328 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 102 C: 64 G: 35 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1083 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 329 Contig length: 249 Avg. contig coverage: 1.62 Consensus contains: A: 78 C: 59 G: 71 T: 31 N: 0 IUPAC: 7 Funny: 0 *: 3 Num reads: 2 Avg. read length: 202 Reads contain 402 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1081 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 330 Contig length: 492 Avg. contig coverage: 1.38 Consensus contains: A: 118 C: 134 G: 96 T: 129 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 2 Avg. read length: 341 Reads contain 680 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1079 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 331 Contig length: 215 Avg. contig coverage: 1 Consensus contains: A: 48 C: 65 G: 51 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 215 Reads contain 215 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1078 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 332 Contig length: 287 Avg. contig coverage: 1.3 Consensus contains: A: 54 C: 75 G: 62 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 187 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1076 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 333 Contig length: 396 Avg. contig coverage: 1.34 Consensus contains: A: 102 C: 98 G: 84 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 266 Reads contain 531 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1074 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 334 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 141 C: 80 G: 63 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1073 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 335 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 68 C: 70 G: 67 T: 77 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 282 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1072 +[1] +++rrr+++++r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 336 Contig length: 739 Avg. contig coverage: 4.97 Consensus contains: A: 163 C: 178 G: 169 T: 169 N: 0 IUPAC: 53 Funny: 0 *: 7 Num reads: 9 Avg. read length: 408 Reads contain 3650 bases, 1 Ns and 29 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 30 Strong RMB - 1 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 336 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1072 +[1] ppppppp+pppppp+p RL1 [3] pThat's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 336 Contig length: 729 Avg. contig coverage: 1.72 Consensus contains: A: 163 C: 176 G: 176 T: 168 N: 1 IUPAC: 42 Funny: 0 *: 3 Num reads: 3 Avg. read length: 419 Reads contain 1253 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1069 +[1] +ppppp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 337 Contig length: 607 Avg. contig coverage: 1.62 Consensus contains: A: 150 C: 143 G: 160 T: 153 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 493 Reads contain 986 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1067 +[1] ++p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 338 Contig length: 401 Avg. contig coverage: 2.66 Consensus contains: A: 102 C: 109 G: 100 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 355 Reads contain 1064 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1064 +[1] +a++ara++ra RL1 [6] aThat's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 339 Contig length: 615 Avg. contig coverage: 3.71 Consensus contains: A: 128 C: 124 G: 162 T: 152 N: 0 IUPAC: 44 Funny: 0 *: 5 Num reads: 6 Avg. read length: 380 Reads contain 2256 bases, 6 Ns and 23 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 2 Strong RMB - 0 Weak RMB - 0 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering tags to readpool. The previously assembled contig had grave misassemblies, rebuilding contig 339 now. Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1064 +[1] +apap+pp+raa RL1 [4] ppThat's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 339 Contig length: 613 Avg. contig coverage: 2.75 Consensus contains: A: 131 C: 129 G: 164 T: 159 N: 0 IUPAC: 27 Funny: 0 *: 3 Num reads: 4 Avg. read length: 422 Reads contain 1670 bases, 4 Ns and 15 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1060 +[1] pp+pp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 340 Contig length: 492 Avg. contig coverage: 1.33 Consensus contains: A: 96 C: 142 G: 116 T: 137 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 328 Reads contain 657 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1058 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 341 Contig length: 493 Avg. contig coverage: 1.51 Consensus contains: A: 97 C: 145 G: 115 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 374 Reads contain 746 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1056 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 342 Contig length: 462 Avg. contig coverage: 2.94 Consensus contains: A: 101 C: 104 G: 120 T: 134 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 3 Avg. read length: 453 Reads contain 1358 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1053 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 343 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 96 C: 100 G: 107 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 410 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1052 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 344 Contig length: 622 Avg. contig coverage: 3.07 Consensus contains: A: 165 C: 162 G: 128 T: 131 N: 0 IUPAC: 31 Funny: 0 *: 5 Num reads: 5 Avg. read length: 382 Reads contain 1890 bases, 3 Ns and 18 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1047 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 345 Contig length: 407 Avg. contig coverage: 1.92 Consensus contains: A: 103 C: 103 G: 88 T: 107 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 392 Reads contain 783 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1045 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 346 Contig length: 616 Avg. contig coverage: 1 Consensus contains: A: 178 C: 144 G: 155 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 616 Reads contain 615 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1044 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 347 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 87 C: 83 G: 96 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1043 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 348 Contig length: 482 Avg. contig coverage: 2.37 Consensus contains: A: 99 C: 131 G: 103 T: 148 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 381 Reads contain 1143 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1040 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 349 Contig length: 485 Avg. contig coverage: 2.24 Consensus contains: A: 146 C: 100 G: 109 T: 124 N: 0 IUPAC: 4 Funny: 0 *: 2 Num reads: 3 Avg. read length: 362 Reads contain 1083 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1037 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 350 Contig length: 384 Avg. contig coverage: 2.87 Consensus contains: A: 96 C: 90 G: 90 T: 88 N: 0 IUPAC: 19 Funny: 0 *: 1 Num reads: 3 Avg. read length: 367 Reads contain 1094 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1034 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 351 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 100 C: 116 G: 96 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1033 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 352 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 136 C: 116 G: 124 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 492 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1032 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 353 Contig length: 392 Avg. contig coverage: 1.98 Consensus contains: A: 118 C: 65 G: 87 T: 121 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 389 Reads contain 775 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1030 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 354 Contig length: 248 Avg. contig coverage: 1 Consensus contains: A: 77 C: 51 G: 70 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 248 Reads contain 248 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1029 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 355 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 114 C: 98 G: 118 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1028 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 356 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 139 C: 123 G: 146 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1027 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 357 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 135 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 444 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1026 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 358 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 75 T: 106 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 370 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1025 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 359 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 148 C: 96 G: 59 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1024 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 360 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 130 C: 119 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1023 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 361 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 67 C: 90 G: 80 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1022 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 362 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 94 G: 66 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 339 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1021 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 363 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 132 C: 108 G: 140 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 530 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1020 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 364 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 129 C: 71 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1019 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 365 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 37 C: 24 G: 32 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1018 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 366 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 99 C: 139 G: 95 T: 176 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 509 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1017 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 367 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 101 C: 127 G: 129 T: 113 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 470 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1016 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 368 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 156 C: 118 G: 136 T: 134 N: 7 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 544 bases, 7 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1015 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 369 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 103 C: 100 G: 66 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 393 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1014 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 370 Contig length: 362 Avg. contig coverage: 1 Consensus contains: A: 92 C: 88 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 362 Reads contain 362 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1013 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 371 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 106 C: 140 G: 97 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 464 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1012 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 372 Contig length: 265 Avg. contig coverage: 1 Consensus contains: A: 81 C: 46 G: 64 T: 73 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 265 Reads contain 264 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1011 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 373 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 122 C: 116 G: 114 T: 148 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 500 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1010 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 374 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 152 C: 98 G: 70 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1009 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 375 Contig length: 275 Avg. contig coverage: 1 Consensus contains: A: 61 C: 60 G: 53 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 275 Reads contain 275 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1008 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 376 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 79 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1007 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 377 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 161 C: 138 G: 126 T: 162 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 587 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1006 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 378 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 122 C: 55 G: 35 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 309 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1005 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 379 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 155 C: 139 G: 101 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 558 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1004 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 380 Contig length: 508 Avg. contig coverage: 1 Consensus contains: A: 140 C: 109 G: 134 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 508 Reads contain 507 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1003 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 381 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 167 C: 162 G: 94 T: 159 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 582 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 382 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1002 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 382 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 95 C: 92 G: 67 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 383 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1001 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 383 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 56 C: 67 G: 50 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 298 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 384 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1000 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 384 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 124 C: 100 G: 120 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 452 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 385 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 999 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 385 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 128 C: 124 G: 160 T: 116 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 528 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 386 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 998 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 386 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 140 C: 137 G: 99 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 387 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 997 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 387 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 159 C: 159 G: 127 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 576 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 388 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 996 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 388 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 141 C: 89 G: 85 T: 128 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 443 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 389 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 995 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 389 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 59 C: 65 G: 67 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 390 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 994 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 390 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 148 C: 100 G: 128 T: 153 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 391 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 993 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 391 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 138 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 427 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 392 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 992 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 392 Contig length: 555 Avg. contig coverage: 1 Consensus contains: A: 131 C: 160 G: 95 T: 161 N: 8 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 555 Reads contain 547 bases, 8 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 393 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 991 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 393 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 129 C: 103 G: 123 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 394 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 990 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 394 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 123 C: 86 G: 64 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 395 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 989 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 395 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 116 C: 108 G: 56 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 396 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 988 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 396 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 165 C: 137 G: 116 T: 155 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 573 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 397 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 987 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 397 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 119 C: 113 G: 96 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 398 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 986 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 398 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 105 C: 77 G: 74 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 399 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 985 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 399 Contig length: 621 Avg. contig coverage: 1 Consensus contains: A: 162 C: 140 G: 167 T: 148 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 621 Reads contain 617 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 400 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 984 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 400 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 137 C: 121 G: 147 T: 128 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 533 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 401 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 983 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 401 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 108 C: 104 G: 134 T: 103 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 449 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 402 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 982 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 402 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 119 C: 66 G: 53 T: 82 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 320 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 403 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 981 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 403 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 87 C: 87 G: 131 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 404 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 980 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 404 Contig length: 589 Avg. contig coverage: 1 Consensus contains: A: 157 C: 127 G: 164 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 589 Reads contain 589 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 405 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 979 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 405 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 119 C: 120 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 406 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 978 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 406 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 67 C: 58 G: 85 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 407 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 977 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 407 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 76 C: 57 G: 25 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 408 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 976 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 408 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 52 C: 52 G: 35 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 409 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 975 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 409 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 62 C: 26 G: 29 T: 38 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 410 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 974 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 410 Contig length: 166 Avg. contig coverage: 1 Consensus contains: A: 23 C: 38 G: 47 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 166 Reads contain 166 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 411 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 973 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 411 Contig length: 217 Avg. contig coverage: 1 Consensus contains: A: 57 C: 44 G: 54 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 217 Reads contain 217 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 412 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 972 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 412 Contig length: 163 Avg. contig coverage: 1 Consensus contains: A: 68 C: 27 G: 23 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 163 Reads contain 163 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 413 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 971 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 413 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 83 C: 41 G: 36 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 414 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 970 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 414 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 102 C: 59 G: 99 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 415 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 969 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 415 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 70 C: 51 G: 42 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 416 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 968 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 416 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 30 C: 40 G: 53 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 417 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 967 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 417 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 56 C: 18 G: 17 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 418 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 966 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 418 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 86 C: 43 G: 27 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 419 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 965 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 419 Contig length: 120 Avg. contig coverage: 1 Consensus contains: A: 47 C: 22 G: 11 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 120 Reads contain 120 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 420 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 964 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 420 Contig length: 199 Avg. contig coverage: 1 Consensus contains: A: 81 C: 38 G: 26 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 199 Reads contain 199 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 421 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 963 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 421 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 151 C: 117 G: 135 T: 162 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 565 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 422 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 962 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 422 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 104 C: 76 G: 102 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 423 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 961 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 423 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 67 G: 101 T: 87 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 346 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 424 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 960 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 424 Contig length: 139 Avg. contig coverage: 1 Consensus contains: A: 29 C: 36 G: 34 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 139 Reads contain 139 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 425 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 959 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 425 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 48 C: 45 G: 6 T: 58 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 157 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 426 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 958 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 426 Contig length: 129 Avg. contig coverage: 1 Consensus contains: A: 39 C: 34 G: 19 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 129 Reads contain 129 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 427 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 957 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 427 Contig length: 226 Avg. contig coverage: 1 Consensus contains: A: 61 C: 48 G: 64 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 226 Reads contain 226 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 428 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 956 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 428 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 90 C: 66 G: 103 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 429 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 955 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 429 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 131 C: 99 G: 51 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 430 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 954 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 430 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 91 T: 96 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 431 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 953 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 431 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 58 C: 43 G: 57 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 432 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 952 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 432 Contig length: 146 Avg. contig coverage: 1 Consensus contains: A: 51 C: 24 G: 32 T: 39 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 146 Reads contain 146 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 433 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 951 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 433 Contig length: 209 Avg. contig coverage: 1 Consensus contains: A: 49 C: 47 G: 47 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 209 Reads contain 208 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 434 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 950 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 434 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 147 C: 94 G: 66 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 435 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 949 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 435 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 157 C: 83 G: 71 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 436 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 948 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 436 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 132 C: 97 G: 110 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 446 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 437 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 947 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 437 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 118 G: 85 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 438 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 946 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 438 Contig length: 308 Avg. contig coverage: 1 Consensus contains: A: 122 C: 67 G: 49 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 308 Reads contain 308 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 439 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 945 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 439 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 22 C: 40 G: 45 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 440 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 944 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 440 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 18 T: 17 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 441 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 943 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 441 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 130 C: 71 G: 99 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 442 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 942 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 442 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 124 C: 76 G: 121 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 443 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 941 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 443 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 119 C: 105 G: 123 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 444 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 940 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 444 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 78 C: 98 G: 86 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 445 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 939 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 445 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 79 C: 76 G: 75 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 446 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 938 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 446 Contig length: 286 Avg. contig coverage: 1 Consensus contains: A: 107 C: 61 G: 38 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 286 Reads contain 286 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 447 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 937 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 447 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 50 C: 34 G: 34 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 448 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 936 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 448 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 132 C: 128 G: 124 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 522 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 449 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 935 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 449 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 111 C: 97 G: 121 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 450 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 934 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 450 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 99 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 451 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 933 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 451 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 53 G: 68 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 452 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 932 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 452 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 165 C: 105 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 453 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 931 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 453 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 67 C: 55 G: 53 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 454 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 930 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 454 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 91 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 455 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 929 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 455 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 45 C: 50 G: 59 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 456 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 928 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 456 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 109 C: 120 G: 90 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 457 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 927 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 457 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 82 C: 79 G: 72 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 458 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 926 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 458 Contig length: 248 Avg. contig coverage: 1 Consensus contains: A: 54 C: 83 G: 53 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 248 Reads contain 248 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 459 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 925 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 459 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 127 C: 94 G: 95 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 460 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 924 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 460 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 143 C: 85 G: 55 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 461 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 923 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 461 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 94 C: 88 G: 78 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 462 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 922 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 462 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 62 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 463 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 921 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 463 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 114 C: 151 G: 92 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 464 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 920 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 464 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 94 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 465 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 919 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 465 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 111 C: 125 G: 104 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 466 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 918 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 466 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 143 C: 113 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 467 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 917 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 467 Contig length: 572 Avg. contig coverage: 1 Consensus contains: A: 152 C: 134 G: 115 T: 171 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 572 Reads contain 572 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 468 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 916 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 468 Contig length: 571 Avg. contig coverage: 1 Consensus contains: A: 149 C: 126 G: 139 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 571 Reads contain 571 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 469 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 915 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 469 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 64 C: 59 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 470 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 914 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 470 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 164 C: 158 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 471 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 913 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 471 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 62 C: 106 G: 68 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 472 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 912 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 472 Contig length: 145 Avg. contig coverage: 1 Consensus contains: A: 33 C: 24 G: 48 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 145 Reads contain 145 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 473 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 911 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 473 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 139 C: 126 G: 108 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 474 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 910 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 474 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 124 C: 58 G: 57 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 475 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 909 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 475 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 75 C: 65 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 476 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 908 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 476 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 29 G: 27 T: 34 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 477 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 907 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 477 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 139 C: 115 G: 101 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 478 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 906 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 478 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 151 C: 121 G: 132 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 479 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 905 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 479 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 99 C: 131 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 480 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 904 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 480 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 140 C: 84 G: 75 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 481 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 903 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 481 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 146 C: 116 G: 119 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 482 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 902 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 482 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 95 C: 124 G: 70 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 483 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 901 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 483 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 102 C: 31 G: 35 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 484 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 900 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 484 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 106 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 485 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 899 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 485 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 163 C: 108 G: 66 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 486 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 898 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 486 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 159 C: 111 G: 128 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 533 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 487 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 897 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 487 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 139 C: 97 G: 59 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 488 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 896 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 488 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 77 C: 83 G: 67 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 489 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 895 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 489 Contig length: 97 Avg. contig coverage: 1 Consensus contains: A: 22 C: 17 G: 37 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 97 Reads contain 97 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 490 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 894 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 490 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 135 C: 97 G: 140 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 491 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 893 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 491 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 131 C: 86 G: 48 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 492 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 892 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 492 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 97 C: 77 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 493 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 891 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 493 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 76 C: 97 G: 106 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 494 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 890 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 494 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 157 C: 138 G: 114 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 495 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 889 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 495 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 113 C: 100 G: 118 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 496 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 888 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 496 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 98 C: 115 G: 82 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 497 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 887 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 497 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 34 C: 17 G: 16 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 498 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 886 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 498 Contig length: 112 Avg. contig coverage: 1 Consensus contains: A: 20 C: 18 G: 43 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 112 Reads contain 112 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 499 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 885 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 499 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 38 C: 79 G: 77 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 500 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 884 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 500 Contig length: 221 Avg. contig coverage: 1 Consensus contains: A: 62 C: 57 G: 62 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 221 Reads contain 221 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 501 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 883 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 501 Contig length: 204 Avg. contig coverage: 1 Consensus contains: A: 36 C: 64 G: 62 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 204 Reads contain 204 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 502 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 882 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 502 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 98 G: 65 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 503 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 881 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 503 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 87 C: 65 G: 57 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 504 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 880 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 504 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 58 C: 39 G: 80 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 505 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 879 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 505 Contig length: 276 Avg. contig coverage: 1 Consensus contains: A: 66 C: 56 G: 76 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 276 Reads contain 276 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 506 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 878 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 506 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 169 C: 110 G: 79 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 507 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 877 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 507 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 114 C: 168 G: 101 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 508 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 876 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 508 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 145 C: 118 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 509 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 875 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 509 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 144 C: 133 G: 104 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 510 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 874 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 510 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 152 C: 76 G: 129 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 511 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 873 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 511 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 151 C: 129 G: 179 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 512 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 872 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 512 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 146 C: 92 G: 117 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 513 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 871 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 513 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 84 C: 36 G: 19 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 514 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 870 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 514 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 167 C: 102 G: 137 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 515 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 869 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 515 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 107 C: 80 G: 99 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 516 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 868 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 516 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 160 C: 110 G: 89 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 517 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 867 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 517 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 146 C: 85 G: 95 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 518 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 866 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 518 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 177 C: 120 G: 121 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 568 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 519 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 865 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 519 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 117 C: 135 G: 97 T: 152 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 520 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 864 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 520 Contig length: 470 Avg. contig coverage: 1 Consensus contains: A: 134 C: 92 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 470 Reads contain 470 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 521 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 863 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 521 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 82 C: 70 G: 92 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 522 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 862 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 522 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 153 C: 125 G: 123 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 523 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 861 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 523 Contig length: 657 Avg. contig coverage: 1 Consensus contains: A: 171 C: 161 G: 107 T: 218 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 657 Reads contain 657 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 524 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 860 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 524 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 145 C: 131 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 525 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 859 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 525 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 155 C: 131 G: 156 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 526 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 858 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 526 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 110 C: 104 G: 125 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 527 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 857 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 527 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 170 C: 116 G: 91 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 528 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 856 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 528 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 146 C: 99 G: 114 T: 192 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 529 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 855 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 529 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 106 T: 146 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 488 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 530 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 854 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 530 Contig length: 254 Avg. contig coverage: 1 Consensus contains: A: 104 C: 44 G: 35 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 254 Reads contain 254 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 531 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 853 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 531 Contig length: 612 Avg. contig coverage: 1 Consensus contains: A: 147 C: 129 G: 155 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 612 Reads contain 610 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 532 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 852 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 532 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 47 C: 27 G: 54 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 533 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 851 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 533 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 132 C: 91 G: 108 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 534 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 850 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 534 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 121 C: 133 G: 119 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 535 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 849 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 535 Contig length: 579 Avg. contig coverage: 1 Consensus contains: A: 124 C: 141 G: 124 T: 190 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 579 Reads contain 579 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 536 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 848 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 536 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 120 C: 81 G: 43 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 537 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 847 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 537 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 117 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 538 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 846 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 538 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 111 C: 109 G: 110 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 539 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 845 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 539 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 155 C: 143 G: 69 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 540 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 844 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 540 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 151 C: 120 G: 118 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 541 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 843 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 541 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 147 C: 115 G: 131 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 542 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 842 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 542 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 197 C: 120 G: 84 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 543 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 841 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 543 Contig length: 600 Avg. contig coverage: 1 Consensus contains: A: 200 C: 113 G: 143 T: 141 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 600 Reads contain 597 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 544 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 840 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 544 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 101 C: 100 G: 107 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 545 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 839 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 545 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 81 C: 58 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 546 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 838 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 546 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 142 C: 105 G: 121 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 547 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 837 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 547 Contig length: 450 Avg. contig coverage: 1 Consensus contains: A: 114 C: 103 G: 120 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 450 Reads contain 450 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 548 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 836 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 548 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 147 G: 102 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 549 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 835 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 549 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 135 C: 109 G: 132 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 550 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 834 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 550 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 91 C: 40 G: 35 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 551 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 833 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 551 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 159 C: 118 G: 87 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 510 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 552 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 832 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 552 Contig length: 581 Avg. contig coverage: 1 Consensus contains: A: 147 C: 170 G: 113 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 581 Reads contain 581 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 553 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 831 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 553 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 127 C: 121 G: 96 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 554 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 830 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 554 Contig length: 290 Avg. contig coverage: 1 Consensus contains: A: 99 C: 73 G: 32 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 290 Reads contain 290 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 555 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 829 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 555 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 76 C: 167 G: 35 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 556 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 828 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 556 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 160 C: 114 G: 127 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 557 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 827 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 557 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 83 C: 76 G: 107 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 558 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 826 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 558 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 109 C: 74 G: 124 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 559 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 825 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 559 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 154 C: 140 G: 122 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 566 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 560 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 824 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 560 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 100 C: 78 G: 48 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 561 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 823 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 561 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 187 C: 147 G: 71 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 562 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 822 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 562 Contig length: 567 Avg. contig coverage: 1 Consensus contains: A: 150 C: 104 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 567 Reads contain 567 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 563 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 821 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 563 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 150 C: 116 G: 111 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 564 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 820 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 564 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 143 C: 88 G: 75 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 565 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 819 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 565 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 133 C: 116 G: 141 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 566 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 818 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 566 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 82 C: 82 G: 100 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 567 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 817 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 567 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 157 C: 111 G: 66 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 568 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 816 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 568 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 155 C: 100 G: 88 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 569 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 815 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 569 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 66 C: 81 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 570 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 814 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 570 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 128 C: 121 G: 115 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 571 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 813 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 571 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 139 C: 122 G: 107 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 572 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 812 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 572 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 163 C: 100 G: 118 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 573 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 811 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 573 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 109 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 574 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 810 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 574 Contig length: 542 Avg. contig coverage: 1 Consensus contains: A: 128 C: 154 G: 149 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 542 Reads contain 541 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 575 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 809 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 575 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 133 C: 108 G: 101 T: 201 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 543 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 576 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 808 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 576 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 123 C: 128 G: 118 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 577 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 807 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 577 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 117 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 578 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 806 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 578 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 98 C: 62 G: 128 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 579 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 805 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 579 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 54 C: 21 G: 47 T: 20 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 580 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 804 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 580 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 67 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 581 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 803 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 581 Contig length: 464 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 61 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 464 Reads contain 464 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 582 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 802 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 582 Contig length: 487 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 106 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 487 Reads contain 487 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 583 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 801 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 583 Contig length: 361 Avg. contig coverage: 1 Consensus contains: A: 83 C: 69 G: 105 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 361 Reads contain 361 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 584 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 800 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 584 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 135 C: 117 G: 129 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 585 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 799 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 585 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 78 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 586 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 798 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 586 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 63 C: 90 G: 86 T: 86 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 325 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 587 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 797 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 587 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 111 C: 124 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 588 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 796 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 588 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 84 C: 178 G: 108 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 589 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 795 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 589 Contig length: 656 Avg. contig coverage: 1 Consensus contains: A: 184 C: 144 G: 162 T: 164 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 656 Reads contain 654 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 590 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 794 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 590 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 79 C: 85 G: 95 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 591 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 793 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 591 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 171 C: 120 G: 172 T: 158 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 621 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 592 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 792 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 592 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 117 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 593 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 791 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 593 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 153 C: 131 G: 112 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 594 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 790 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 594 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 97 C: 102 G: 88 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 595 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 789 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 595 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 191 C: 121 G: 109 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 596 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 788 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 596 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 170 C: 148 G: 168 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 597 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 787 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 597 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 120 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 598 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 786 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 598 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 599 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 785 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 599 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 117 C: 133 G: 93 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 600 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 784 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 600 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 152 C: 107 G: 147 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 585 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 601 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 783 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 601 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 131 C: 123 G: 105 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 602 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 782 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 602 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 140 C: 113 G: 96 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 603 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 781 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 603 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 122 C: 104 G: 104 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 604 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 780 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 604 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 159 C: 150 G: 114 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 605 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 779 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 605 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 182 C: 107 G: 147 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 606 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 778 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 606 Contig length: 615 Avg. contig coverage: 1 Consensus contains: A: 141 C: 148 G: 171 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 615 Reads contain 614 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 607 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 777 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 607 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 162 C: 127 G: 96 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 608 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 776 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 608 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 148 C: 130 G: 102 T: 179 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 609 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 775 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 609 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 135 C: 133 G: 142 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 552 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 610 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 774 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 610 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 176 C: 134 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 611 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 773 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 611 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 128 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 612 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 772 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 612 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 137 C: 95 G: 96 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 613 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 771 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 613 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 138 C: 110 G: 124 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 614 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 770 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 614 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 159 C: 94 G: 104 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 615 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 769 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 615 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 160 C: 111 G: 72 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 616 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 768 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 616 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 134 C: 111 G: 101 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 617 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 767 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 617 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 156 C: 141 G: 150 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 592 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 618 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 766 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 618 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 91 C: 54 G: 76 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 619 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 765 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 619 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 131 C: 78 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 620 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 764 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 620 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 99 C: 96 G: 141 T: 186 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 621 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 763 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 621 Contig length: 590 Avg. contig coverage: 1 Consensus contains: A: 154 C: 124 G: 146 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 590 Reads contain 590 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 622 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 762 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 622 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 138 C: 142 G: 107 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 623 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 761 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 623 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 154 C: 117 G: 107 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 624 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 760 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 624 Contig length: 159 Avg. contig coverage: 1 Consensus contains: A: 59 C: 36 G: 23 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 159 Reads contain 159 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 625 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 759 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 625 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 82 C: 104 G: 83 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 626 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 758 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 626 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 94 C: 35 G: 32 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 627 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 757 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 627 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 77 C: 113 G: 128 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 628 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 756 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 628 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 96 C: 74 G: 87 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 629 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 755 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 629 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 129 C: 73 G: 61 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 630 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 754 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 630 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 127 C: 106 G: 112 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 631 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 753 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 631 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 92 C: 74 G: 120 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 632 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 752 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 632 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 106 C: 54 G: 133 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 633 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 751 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 633 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 141 C: 114 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 634 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 750 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 634 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 79 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 635 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 749 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 635 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 125 C: 103 G: 67 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 636 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 748 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 636 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 60 C: 76 G: 82 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 637 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 747 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 637 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 96 G: 127 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 638 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 746 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 638 Contig length: 675 Avg. contig coverage: 1 Consensus contains: A: 194 C: 136 G: 156 T: 187 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 675 Reads contain 673 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 639 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 745 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 639 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 101 C: 111 G: 108 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 640 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 744 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 640 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 131 C: 94 G: 159 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 641 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 743 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 641 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 156 C: 107 G: 84 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 642 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 742 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 642 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 94 C: 104 G: 93 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 643 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 741 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 643 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 169 C: 96 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 644 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 740 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 644 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 126 C: 78 G: 47 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 645 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 739 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 645 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 121 C: 93 G: 83 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 646 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 738 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 646 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 139 C: 77 G: 130 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 647 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 737 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 647 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 82 C: 23 G: 28 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 648 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 736 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 648 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 142 C: 100 G: 84 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 649 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 735 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 649 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 131 C: 117 G: 102 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 650 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 734 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 650 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 122 C: 106 G: 146 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 490 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 651 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 733 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 651 Contig length: 132 Avg. contig coverage: 1 Consensus contains: A: 73 C: 0 G: 30 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 132 Reads contain 132 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 652 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 732 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 652 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 107 C: 75 G: 75 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 653 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 731 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 653 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 85 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 654 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 730 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 654 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 177 C: 130 G: 180 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 655 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 729 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 655 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 128 C: 120 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 656 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 728 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 656 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 126 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 657 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 727 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 657 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 150 C: 107 G: 66 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 658 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 726 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 658 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 83 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 430 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 659 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 725 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 659 Contig length: 640 Avg. contig coverage: 1 Consensus contains: A: 152 C: 176 G: 123 T: 189 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 640 Reads contain 640 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 660 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 724 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 660 Contig length: 637 Avg. contig coverage: 1 Consensus contains: A: 164 C: 151 G: 139 T: 182 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 637 Reads contain 636 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 661 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 723 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 661 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 134 C: 113 G: 112 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 662 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 722 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 662 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 109 C: 89 G: 77 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 663 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 721 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 663 Contig length: 664 Avg. contig coverage: 1 Consensus contains: A: 188 C: 119 G: 177 T: 178 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 664 Reads contain 662 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 664 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 720 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 664 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 150 C: 112 G: 139 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 665 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 719 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 665 Contig length: 613 Avg. contig coverage: 1 Consensus contains: A: 178 C: 117 G: 156 T: 161 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 613 Reads contain 612 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 666 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 718 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 666 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 127 C: 147 G: 109 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 667 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 717 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 667 Contig length: 625 Avg. contig coverage: 1 Consensus contains: A: 162 C: 145 G: 162 T: 155 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 625 Reads contain 624 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 668 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 716 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 668 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 169 C: 131 G: 128 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 577 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 669 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 715 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 669 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 171 C: 141 G: 109 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 670 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 714 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 670 Contig length: 611 Avg. contig coverage: 1 Consensus contains: A: 204 C: 139 G: 95 T: 171 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 611 Reads contain 609 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 671 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 713 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 671 Contig length: 652 Avg. contig coverage: 1 Consensus contains: A: 160 C: 140 G: 160 T: 191 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 652 Reads contain 651 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 672 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 712 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 672 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 144 C: 102 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 673 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 711 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 673 Contig length: 570 Avg. contig coverage: 1 Consensus contains: A: 142 C: 136 G: 151 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 570 Reads contain 570 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 674 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 710 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 674 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 124 C: 117 G: 125 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 497 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 675 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 709 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 675 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 141 C: 140 G: 110 T: 183 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 676 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 708 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 676 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 130 C: 117 G: 165 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 677 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 707 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 677 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 176 C: 131 G: 78 T: 184 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 678 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 706 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 678 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 191 C: 117 G: 63 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 679 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 705 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 679 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 167 C: 144 G: 122 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 680 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 704 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 680 Contig length: 588 Avg. contig coverage: 1 Consensus contains: A: 198 C: 119 G: 105 T: 165 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 588 Reads contain 587 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 681 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 703 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 681 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 155 C: 102 G: 141 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 682 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 702 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 682 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 130 C: 137 G: 109 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 683 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 701 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 683 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 157 C: 104 G: 149 T: 174 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 584 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 684 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 700 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 684 Contig length: 596 Avg. contig coverage: 1 Consensus contains: A: 137 C: 146 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 596 Reads contain 596 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 685 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 699 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 685 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 194 C: 102 G: 127 T: 127 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 550 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 686 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 698 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 686 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 112 C: 86 G: 83 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 687 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 697 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 687 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 58 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 688 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 696 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 688 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 137 C: 115 G: 83 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 689 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 695 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 689 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 107 C: 107 G: 107 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 690 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 694 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 690 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 127 C: 83 G: 42 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 691 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 693 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 691 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 172 C: 111 G: 83 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 692 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 692 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 692 Contig length: 397 Avg. contig coverage: 1 Consensus contains: A: 119 C: 133 G: 56 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 397 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 693 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 691 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 693 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 166 C: 116 G: 166 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 694 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 690 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 694 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 131 C: 130 G: 109 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 511 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 695 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 689 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 695 Contig length: 344 Avg. contig coverage: 1 Consensus contains: A: 84 C: 80 G: 78 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 344 Reads contain 344 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 696 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 688 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 696 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 128 C: 111 G: 108 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 697 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 687 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 697 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 82 C: 61 G: 74 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 698 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 686 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 698 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 71 C: 78 G: 89 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 699 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 685 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 699 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 55 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 700 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 684 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 700 Contig length: 298 Avg. contig coverage: 1 Consensus contains: A: 101 C: 64 G: 47 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 298 Reads contain 298 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 701 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 683 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 701 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 139 T: 147 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 557 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 702 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 682 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 702 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 137 C: 116 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 703 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 681 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 703 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 130 C: 141 G: 109 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 704 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 680 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 704 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 99 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 705 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 679 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 705 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 127 C: 124 G: 109 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 706 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 678 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 706 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 114 C: 120 G: 87 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 707 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 677 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 707 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 180 C: 147 G: 80 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 708 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 676 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 708 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 132 C: 154 G: 95 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 709 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 675 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 709 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 194 C: 139 G: 71 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 710 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 674 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 710 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 145 C: 116 G: 91 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 490 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 711 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 673 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 711 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 169 C: 80 G: 130 T: 122 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 501 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 712 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 672 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 712 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 113 C: 124 G: 101 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 713 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 671 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 713 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 145 C: 112 G: 150 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 714 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 670 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 714 Contig length: 605 Avg. contig coverage: 1 Consensus contains: A: 176 C: 111 G: 158 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 605 Reads contain 605 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 715 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 669 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 715 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 135 C: 136 G: 91 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 472 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 716 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 668 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 716 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 189 C: 113 G: 110 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 717 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 667 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 717 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 123 C: 155 G: 71 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 718 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 666 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 718 Contig length: 504 Avg. contig coverage: 1 Consensus contains: A: 125 C: 144 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 504 Reads contain 504 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 719 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 665 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 719 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 145 C: 92 G: 86 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 720 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 664 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 720 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 129 C: 122 G: 113 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 721 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 663 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 721 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 141 C: 105 G: 59 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 722 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 662 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 722 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 107 C: 116 G: 90 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 723 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 661 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 723 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 149 C: 158 G: 123 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 724 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 660 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 724 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 103 C: 75 G: 91 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 725 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 659 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 725 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 121 C: 116 G: 83 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 437 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 726 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 658 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 726 Contig length: 302 Avg. contig coverage: 1 Consensus contains: A: 70 C: 79 G: 72 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 302 Reads contain 302 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 727 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 657 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 727 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 102 C: 82 G: 116 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 728 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 656 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 728 Contig length: 594 Avg. contig coverage: 1 Consensus contains: A: 168 C: 111 G: 165 T: 149 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 594 Reads contain 593 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 729 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 655 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 729 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 122 C: 95 G: 94 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 730 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 654 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 730 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 114 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 731 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 653 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 731 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 164 C: 112 G: 155 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 732 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 652 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 732 Contig length: 499 Avg. contig coverage: 1 Consensus contains: A: 164 C: 120 G: 79 T: 134 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 499 Reads contain 497 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 733 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 651 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 733 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 142 C: 132 G: 94 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 734 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 650 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 734 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 133 C: 127 G: 109 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 735 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 649 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 735 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 108 C: 139 G: 129 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 736 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 648 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 736 Contig length: 582 Avg. contig coverage: 1 Consensus contains: A: 135 C: 119 G: 152 T: 174 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 582 Reads contain 580 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 737 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 647 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 737 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 131 C: 95 G: 57 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 738 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 646 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 738 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 71 G: 91 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 739 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 645 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 739 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 120 C: 86 G: 106 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 740 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 644 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 740 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 177 C: 128 G: 79 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 741 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 643 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 741 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 80 C: 80 G: 92 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 742 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 642 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 742 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 164 C: 136 G: 116 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 743 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 641 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 743 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 130 C: 128 G: 89 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 744 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 640 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 744 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 123 C: 132 G: 138 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 745 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 639 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 745 Contig length: 516 Avg. contig coverage: 1 Consensus contains: A: 178 C: 122 G: 80 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 516 Reads contain 516 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 746 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 638 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 746 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 143 C: 130 G: 112 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 747 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 637 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 747 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 189 C: 124 G: 167 T: 181 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 748 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 636 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 748 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 115 C: 122 G: 148 T: 178 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 749 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 635 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 749 Contig length: 586 Avg. contig coverage: 1 Consensus contains: A: 186 C: 135 G: 132 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 586 Reads contain 586 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 750 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 634 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 750 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 114 C: 73 G: 121 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 751 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 633 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 751 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 108 C: 66 G: 70 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 752 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 632 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 752 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 142 C: 110 G: 139 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 753 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 631 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 753 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 132 C: 117 G: 154 T: 148 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 551 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 754 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 630 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 754 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 80 C: 100 G: 74 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 755 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 629 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 755 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 98 C: 68 G: 69 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 756 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 628 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 756 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 83 C: 54 G: 84 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 757 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 627 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 757 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 23 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 758 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 626 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 758 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 89 C: 66 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 759 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 625 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 759 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 115 C: 170 G: 114 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 760 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 624 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 760 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 88 C: 90 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 761 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 623 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 761 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 93 C: 151 G: 93 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 762 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 622 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 762 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 92 C: 87 G: 65 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 763 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 621 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 763 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 108 C: 194 G: 31 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 764 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 620 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 764 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 133 C: 114 G: 85 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 765 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 619 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 765 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 146 C: 130 G: 113 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 766 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 618 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 766 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 70 C: 28 G: 38 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 767 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 617 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 767 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 66 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 768 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 616 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 768 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 162 C: 106 G: 135 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 769 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 615 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 769 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 138 C: 86 G: 117 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 770 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 614 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 770 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 76 C: 82 G: 84 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 771 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 613 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 771 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 129 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 772 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 612 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 772 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 172 C: 118 G: 141 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 773 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 611 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 773 Contig length: 599 Avg. contig coverage: 1 Consensus contains: A: 162 C: 146 G: 137 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 599 Reads contain 599 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 774 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 610 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 774 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 109 C: 80 G: 107 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 775 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 609 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 775 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 138 C: 111 G: 169 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 776 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 608 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 776 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 147 C: 106 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 777 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 607 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 777 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 123 C: 145 G: 141 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 778 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 606 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 778 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 124 C: 115 G: 131 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 779 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 605 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 779 Contig length: 561 Avg. contig coverage: 1 Consensus contains: A: 169 C: 127 G: 138 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 561 Reads contain 561 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 780 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 604 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 780 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 115 C: 83 G: 82 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 781 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 603 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 781 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 160 C: 125 G: 133 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 782 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 602 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 782 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 104 C: 137 G: 49 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 783 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 601 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 783 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 143 C: 110 G: 124 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 784 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 600 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 784 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 150 C: 82 G: 64 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 785 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 599 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 785 Contig length: 297 Avg. contig coverage: 1 Consensus contains: A: 101 C: 71 G: 52 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 297 Reads contain 297 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 786 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 598 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 786 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 91 C: 87 G: 68 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 787 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 597 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 787 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 76 C: 66 G: 54 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 788 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 596 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 788 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 64 C: 41 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 789 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 595 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 789 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 141 C: 115 G: 96 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 790 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 594 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 790 Contig length: 641 Avg. contig coverage: 1 Consensus contains: A: 181 C: 170 G: 127 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 641 Reads contain 641 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 791 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 593 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 791 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 95 C: 59 G: 62 T: 136 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 352 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 792 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 592 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 792 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 124 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 545 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 793 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 591 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 793 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 60 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 794 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 590 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 794 Contig length: 607 Avg. contig coverage: 1 Consensus contains: A: 171 C: 121 G: 153 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 607 Reads contain 607 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 795 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 589 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 795 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 149 C: 136 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 796 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 588 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 796 Contig length: 170 Avg. contig coverage: 1 Consensus contains: A: 54 C: 27 G: 5 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 170 Reads contain 170 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 797 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 587 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 797 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 168 C: 108 G: 118 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 798 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 586 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 798 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 107 C: 51 G: 71 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 799 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 585 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 799 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 72 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 800 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 584 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 800 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 122 C: 91 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 452 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 801 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 583 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 801 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 126 C: 91 G: 73 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 802 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 582 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 802 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 127 C: 70 G: 51 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 803 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 581 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 803 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 144 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 804 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 580 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 804 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 119 C: 103 G: 129 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 805 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 579 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 805 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 158 C: 123 G: 122 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 806 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 578 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 806 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 136 C: 110 G: 102 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 807 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 577 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 807 Contig length: 283 Avg. contig coverage: 1 Consensus contains: A: 74 C: 58 G: 76 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 283 Reads contain 283 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 808 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 576 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 808 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 154 C: 120 G: 101 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 809 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 575 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 809 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 161 C: 164 G: 141 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 623 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 810 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 574 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 810 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 172 C: 120 G: 123 T: 188 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 811 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 573 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 811 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 137 C: 80 G: 45 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 812 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 572 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 812 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 88 C: 103 G: 68 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 813 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 571 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 813 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 126 C: 114 G: 100 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 814 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 570 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 814 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 105 C: 110 G: 74 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 815 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 569 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 815 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 90 C: 101 G: 94 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 816 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 568 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 816 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 65 C: 56 G: 57 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 817 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 567 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 817 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 98 C: 87 G: 87 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 818 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 566 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 818 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 80 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 819 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 565 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 819 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 124 C: 79 G: 152 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 820 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 564 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 820 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 102 C: 42 G: 43 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 821 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 563 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 821 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 62 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 822 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 562 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 822 Contig length: 111 Avg. contig coverage: 1 Consensus contains: A: 28 C: 16 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 111 Reads contain 111 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 823 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 561 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 823 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 127 C: 66 G: 102 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 824 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 560 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 824 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 73 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 825 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 559 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 825 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 67 C: 91 G: 82 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 826 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 558 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 826 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 62 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 827 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 557 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 827 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 81 C: 80 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 828 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 556 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 828 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 105 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 454 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 829 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 555 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 829 Contig length: 279 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 45 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 279 Reads contain 279 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 830 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 554 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 830 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 49 C: 79 G: 44 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 831 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 553 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 831 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 67 C: 110 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 832 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 552 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 832 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 122 C: 89 G: 59 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 833 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 551 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 833 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 122 C: 97 G: 90 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 834 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 550 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 834 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 86 C: 123 G: 113 T: 99 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 835 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 549 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 835 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 96 C: 70 G: 72 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 836 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 548 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 836 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 104 C: 59 G: 45 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 284 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 837 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 547 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 837 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 121 C: 102 G: 84 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 838 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 546 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 838 Contig length: 314 Avg. contig coverage: 1 Consensus contains: A: 80 C: 86 G: 59 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 314 Reads contain 314 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 839 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 545 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 839 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 64 C: 51 G: 49 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 840 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 544 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 840 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 102 G: 80 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 841 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 543 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 841 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 84 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 842 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 542 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 842 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 107 C: 39 G: 26 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 843 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 541 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 843 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 84 C: 71 G: 90 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 844 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 540 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 844 Contig length: 218 Avg. contig coverage: 1 Consensus contains: A: 69 C: 54 G: 25 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 218 Reads contain 218 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 845 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 539 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 845 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 113 C: 112 G: 75 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 846 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 538 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 846 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 73 C: 53 G: 86 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 847 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 537 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 847 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 71 C: 58 G: 57 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 848 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 536 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 848 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 110 C: 62 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 849 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 535 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 849 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 104 C: 73 G: 51 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 850 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 534 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 850 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 29 C: 31 G: 31 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 851 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 533 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 851 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 125 C: 95 G: 86 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 852 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 532 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 852 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 62 C: 41 G: 50 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 853 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 531 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 853 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 69 C: 65 G: 59 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 854 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 530 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 854 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 113 C: 87 G: 115 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 855 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 529 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 855 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 82 C: 109 G: 118 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 856 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 528 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 856 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 139 C: 108 G: 119 T: 112 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 478 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 857 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 527 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 857 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 97 C: 78 G: 58 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 858 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 526 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 858 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 106 C: 173 G: 113 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 859 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 525 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 859 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 111 C: 99 G: 110 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 860 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 524 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 860 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 144 C: 132 G: 133 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 544 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 861 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 523 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 861 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 155 C: 114 G: 114 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 862 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 522 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 862 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 114 C: 123 G: 125 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 863 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 521 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 863 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 60 C: 47 G: 38 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 864 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 520 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 864 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 98 C: 90 G: 82 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 371 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 865 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 519 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 865 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 125 C: 88 G: 130 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 866 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 518 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 866 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 154 C: 137 G: 126 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 867 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 517 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 867 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 129 C: 149 G: 122 T: 144 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 868 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 516 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 868 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 164 C: 148 G: 102 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 869 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 515 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 869 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 73 C: 87 G: 86 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 870 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 514 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 870 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 123 C: 137 G: 78 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 871 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 513 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 871 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 43 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 872 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 512 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 872 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 107 C: 126 G: 89 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 873 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 511 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 873 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 82 C: 34 G: 27 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 874 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 510 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 874 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 117 C: 98 G: 136 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 875 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 509 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 875 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 88 C: 70 G: 83 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 876 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 508 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 876 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 158 C: 103 G: 107 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 877 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 507 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 877 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 137 C: 101 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 878 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 506 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 878 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 137 C: 127 G: 146 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 879 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 505 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 879 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 88 C: 122 G: 85 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 880 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 504 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 880 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 90 C: 60 G: 56 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 881 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 503 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 881 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 112 C: 64 G: 29 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 882 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 502 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 882 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 122 C: 109 G: 90 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 883 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 501 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 883 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 81 C: 95 G: 108 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 884 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 500 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 884 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 135 C: 132 G: 91 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 885 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 499 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 885 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 114 C: 75 G: 55 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 886 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 498 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 886 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 137 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 887 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 497 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 887 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 130 C: 103 G: 137 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 888 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 496 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 888 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 118 C: 104 G: 106 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 889 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 495 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 889 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 106 C: 63 G: 127 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 890 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 494 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 890 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 146 C: 124 G: 169 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 891 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 493 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 891 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 93 C: 66 G: 94 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 892 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 492 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 892 Contig length: 273 Avg. contig coverage: 1 Consensus contains: A: 63 C: 55 G: 79 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 273 Reads contain 273 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 893 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 491 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 893 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 136 C: 81 G: 118 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 894 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 490 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 894 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 106 C: 78 G: 114 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 895 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 489 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 895 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 42 C: 52 G: 44 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 896 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 488 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 896 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 98 C: 81 G: 72 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 897 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 487 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 897 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 139 C: 107 G: 103 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 898 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 486 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 898 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 86 C: 96 G: 103 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 899 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 485 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 899 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 111 C: 81 G: 96 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 900 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 484 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 900 Contig length: 125 Avg. contig coverage: 1 Consensus contains: A: 36 C: 29 G: 23 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 125 Reads contain 125 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 901 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 483 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 901 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 108 C: 75 G: 97 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 902 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 482 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 902 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 130 C: 90 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 903 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 481 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 903 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 101 C: 85 G: 107 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 904 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 480 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 904 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 156 C: 88 G: 35 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 905 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 479 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 905 Contig length: 439 Avg. contig coverage: 1 Consensus contains: A: 105 C: 112 G: 97 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 439 Reads contain 439 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 906 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 478 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 906 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 138 C: 117 G: 97 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 907 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 477 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 907 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 125 C: 124 G: 132 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 908 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 476 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 908 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 909 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 475 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 909 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 128 C: 105 G: 76 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 910 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 474 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 910 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 93 C: 79 G: 118 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 911 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 473 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 911 Contig length: 294 Avg. contig coverage: 1 Consensus contains: A: 102 C: 61 G: 47 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 294 Reads contain 294 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 912 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 472 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 912 Contig length: 414 Avg. contig coverage: 1 Consensus contains: A: 132 C: 110 G: 66 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 414 Reads contain 414 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 913 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 471 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 913 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 124 C: 84 G: 109 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 914 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 470 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 914 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 121 C: 100 G: 133 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 915 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 469 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 915 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 116 C: 128 G: 87 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 916 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 468 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 916 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 114 C: 111 G: 89 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 917 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 467 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 917 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 47 C: 72 G: 41 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 918 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 466 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 918 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 112 C: 107 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 919 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 465 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 919 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 95 C: 107 G: 120 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 920 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 464 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 920 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 144 C: 98 G: 89 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 921 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 463 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 921 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 88 C: 37 G: 17 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 922 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 462 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 922 Contig length: 130 Avg. contig coverage: 1 Consensus contains: A: 30 C: 27 G: 40 T: 33 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 130 Reads contain 130 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 923 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 461 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 923 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 95 G: 94 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 924 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 460 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 924 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 130 C: 112 G: 91 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 925 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 459 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 925 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 71 C: 115 G: 74 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 926 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 458 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 926 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 66 C: 52 G: 45 T: 43 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 927 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 457 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 927 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 107 C: 85 G: 87 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 399 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 928 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 456 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 928 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 152 C: 87 G: 95 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 929 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 455 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 929 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 128 C: 70 G: 96 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 930 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 454 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 930 Contig length: 492 Avg. contig coverage: 1 Consensus contains: A: 156 C: 82 G: 112 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 492 Reads contain 492 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 931 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 453 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 931 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 94 C: 57 G: 116 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 932 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 452 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 932 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 127 C: 100 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 933 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 451 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 933 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 72 C: 94 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 934 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 450 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 934 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 46 C: 57 G: 55 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 935 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 449 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 935 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 101 T: 140 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 470 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 936 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 448 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 936 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 133 C: 126 G: 145 T: 145 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 549 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 937 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 447 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 937 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 137 C: 155 G: 115 T: 140 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 547 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 938 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 446 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 938 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 93 C: 102 G: 92 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 939 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 445 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 939 Contig length: 197 Avg. contig coverage: 1 Consensus contains: A: 76 C: 46 G: 17 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 197 Reads contain 197 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 940 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 444 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 940 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 99 C: 86 G: 74 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 941 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 443 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 941 Contig length: 184 Avg. contig coverage: 1 Consensus contains: A: 47 C: 46 G: 50 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 184 Reads contain 184 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 942 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 442 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 942 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 45 C: 21 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 943 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 441 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 943 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 96 C: 81 G: 90 T: 96 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 363 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 944 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 440 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 944 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 103 G: 83 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 945 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 439 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 945 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 134 C: 98 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 946 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 438 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 946 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 82 C: 98 G: 74 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 375 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 947 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 437 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 947 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 115 C: 75 G: 57 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 948 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 436 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 948 Contig length: 99 Avg. contig coverage: 1 Consensus contains: A: 40 C: 15 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 99 Reads contain 99 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 949 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 435 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 949 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 64 G: 46 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 950 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 434 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 950 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 45 C: 54 G: 52 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 951 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 433 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 951 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 106 C: 79 G: 101 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 952 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 432 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 952 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 78 C: 80 G: 53 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 953 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 431 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 953 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 121 C: 85 G: 105 T: 117 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 428 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 954 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 430 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 954 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 107 C: 95 G: 82 T: 114 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 398 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 955 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 429 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 955 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 118 C: 105 G: 101 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 956 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 428 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 956 Contig length: 178 Avg. contig coverage: 1 Consensus contains: A: 61 C: 39 G: 31 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 178 Reads contain 178 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 957 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 427 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 957 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 19 G: 40 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 958 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 426 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 958 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 94 C: 69 G: 101 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 959 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 425 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 959 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 98 C: 63 G: 75 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 960 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 424 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 960 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 120 C: 104 G: 87 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 961 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 423 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 961 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 117 C: 113 G: 107 T: 149 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 486 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 962 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 422 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 962 Contig length: 228 Avg. contig coverage: 1 Consensus contains: A: 61 C: 49 G: 52 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 228 Reads contain 228 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 963 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 421 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 963 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 102 G: 109 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 964 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 420 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 964 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 80 C: 102 G: 104 T: 105 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 391 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 965 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 419 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 965 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 99 C: 72 G: 85 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 375 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 966 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 418 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 966 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 69 C: 67 G: 129 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 967 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 417 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 967 Contig length: 124 Avg. contig coverage: 1 Consensus contains: A: 50 C: 22 G: 24 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 124 Reads contain 124 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 968 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 416 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 968 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 75 C: 63 G: 94 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 969 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 415 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 969 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 49 C: 44 G: 54 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 970 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 414 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 970 Contig length: 123 Avg. contig coverage: 1 Consensus contains: A: 23 C: 43 G: 29 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 123 Reads contain 123 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 971 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 413 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 971 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 118 C: 90 G: 81 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 398 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 972 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 412 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 972 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 110 C: 122 G: 92 T: 163 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 487 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 973 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 411 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 973 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 118 C: 144 G: 110 T: 133 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 505 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 974 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 410 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 974 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 53 C: 36 G: 81 T: 46 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 975 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 409 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 975 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 125 G: 77 T: 126 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 440 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 976 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 408 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 976 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 57 C: 58 G: 64 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 977 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 407 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 977 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 107 C: 119 G: 88 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 978 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 406 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 978 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 93 C: 82 G: 74 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 979 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 405 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 979 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 90 C: 99 G: 99 T: 102 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 390 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 980 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 404 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 980 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 124 C: 88 G: 89 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 981 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 403 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 981 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 81 C: 89 G: 101 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 366 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 982 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 402 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 982 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 103 C: 109 G: 91 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 441 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 983 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 401 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 983 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 115 C: 58 G: 27 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 984 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 400 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 984 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 57 C: 56 G: 42 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 985 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 399 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 985 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 110 C: 119 G: 106 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 451 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 986 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 398 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 986 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 109 C: 94 G: 96 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 987 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 397 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 987 Contig length: 304 Avg. contig coverage: 1 Consensus contains: A: 105 C: 58 G: 52 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 304 Reads contain 304 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 988 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 396 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 988 Contig length: 383 Avg. contig coverage: 1 Consensus contains: A: 105 C: 94 G: 96 T: 86 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 383 Reads contain 381 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 989 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 395 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 989 Contig length: 186 Avg. contig coverage: 1 Consensus contains: A: 84 C: 40 G: 21 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 186 Reads contain 186 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 990 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 394 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 990 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 156 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 474 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 991 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 393 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 991 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 29 C: 37 G: 32 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 992 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 392 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 992 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 146 C: 96 G: 124 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 504 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 993 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 391 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 993 Contig length: 528 Avg. contig coverage: 1 Consensus contains: A: 138 C: 144 G: 78 T: 166 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 528 Reads contain 526 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 994 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 390 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 994 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 54 C: 72 G: 57 T: 88 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 271 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 995 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 389 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 995 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 73 C: 97 G: 56 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 996 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 388 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 996 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 55 C: 57 G: 51 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 997 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 387 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 997 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 51 C: 56 G: 50 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 998 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 386 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 998 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 107 C: 102 G: 80 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 999 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 385 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 999 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 67 T: 57 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1000 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 384 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1000 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 167 C: 100 G: 49 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1001 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 383 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1001 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 103 C: 78 G: 110 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1002 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 382 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1002 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 55 C: 60 G: 43 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1003 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 381 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1003 Contig length: 213 Avg. contig coverage: 1 Consensus contains: A: 50 C: 88 G: 26 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 213 Reads contain 213 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1004 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 380 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1004 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 107 C: 113 G: 90 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1005 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 379 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1005 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 93 C: 58 G: 92 T: 79 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1006 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 378 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1006 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 108 C: 108 G: 111 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1007 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 377 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1007 Contig length: 287 Avg. contig coverage: 1 Consensus contains: A: 79 C: 74 G: 68 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 287 Reads contain 286 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1008 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 376 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1008 Contig length: 191 Avg. contig coverage: 1 Consensus contains: A: 52 C: 46 G: 39 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 191 Reads contain 191 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1009 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 375 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1009 Contig length: 115 Avg. contig coverage: 1 Consensus contains: A: 33 C: 38 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 115 Reads contain 115 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1010 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 374 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1010 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 84 C: 56 G: 85 T: 119 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 344 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1011 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 373 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1011 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 141 C: 116 G: 81 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1012 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 372 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1012 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 104 C: 74 G: 44 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1013 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 371 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1013 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 71 C: 82 G: 76 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1014 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 370 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1014 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 56 C: 61 G: 33 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1015 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 369 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1015 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 81 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1016 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 368 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1016 Contig length: 203 Avg. contig coverage: 1 Consensus contains: A: 57 C: 50 G: 43 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 203 Reads contain 203 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1017 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 367 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1017 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 55 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1018 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 366 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1018 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 113 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1019 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 365 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1019 Contig length: 101 Avg. contig coverage: 1 Consensus contains: A: 24 C: 41 G: 14 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 101 Reads contain 101 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1020 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 364 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1020 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 55 C: 47 G: 39 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1021 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 363 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1021 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 100 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1022 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 362 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1022 Contig length: 250 Avg. contig coverage: 1 Consensus contains: A: 62 C: 65 G: 56 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 250 Reads contain 250 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1023 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 361 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1023 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 50 C: 45 G: 66 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1024 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 360 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1024 Contig length: 152 Avg. contig coverage: 1 Consensus contains: A: 37 C: 41 G: 39 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 152 Reads contain 152 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1025 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 359 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1025 Contig length: 257 Avg. contig coverage: 1 Consensus contains: A: 89 C: 53 G: 43 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 257 Reads contain 257 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1026 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 358 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1026 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 126 C: 75 G: 127 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 445 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1027 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 357 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1027 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 64 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1028 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 356 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1028 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 96 G: 77 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1029 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 355 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1029 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 150 C: 142 G: 123 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1030 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 354 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1030 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 118 C: 93 G: 74 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1031 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 353 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1031 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 156 C: 125 G: 82 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1032 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 352 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1032 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 92 C: 109 G: 86 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 403 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1033 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 351 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1033 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 131 C: 128 G: 115 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1034 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 350 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1034 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 143 C: 79 G: 122 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1035 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 349 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1035 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 115 C: 104 G: 100 T: 134 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 453 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1036 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 348 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1036 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 122 C: 78 G: 45 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1037 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 347 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1037 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 105 C: 69 G: 108 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 389 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1038 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 346 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1038 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 61 C: 86 G: 82 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1039 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 345 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1039 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 146 C: 89 G: 135 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1040 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 344 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1040 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 107 C: 88 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1041 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 343 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1041 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 63 C: 79 G: 101 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1042 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 342 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1042 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 141 C: 87 G: 94 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1043 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 341 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1043 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 118 C: 92 G: 120 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1044 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 340 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1044 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 80 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1045 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 339 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1045 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 77 C: 77 G: 73 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1046 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 338 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1046 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 94 C: 110 G: 91 T: 74 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 369 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1047 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 337 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1047 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 154 C: 103 G: 99 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 510 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1048 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 336 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1048 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 125 C: 120 G: 120 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 484 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1049 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 335 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1049 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 117 C: 97 G: 127 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1050 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 334 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1050 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 104 C: 154 G: 89 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1051 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 333 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1051 Contig length: 363 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 76 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 363 Reads contain 363 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1052 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 332 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1052 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 47 C: 55 G: 52 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1053 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 331 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1053 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 93 C: 131 G: 119 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1054 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 330 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1054 Contig length: 86 Avg. contig coverage: 1 Consensus contains: A: 36 C: 17 G: 12 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 86 Reads contain 86 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1055 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 329 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1055 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 111 C: 100 G: 71 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1056 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 328 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1056 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 76 C: 81 G: 92 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1057 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 327 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1057 Contig length: 96 Avg. contig coverage: 1 Consensus contains: A: 24 C: 16 G: 25 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 96 Reads contain 96 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1058 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 326 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1058 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 126 C: 117 G: 114 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1059 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 325 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1059 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 117 C: 65 G: 93 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1060 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 324 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1060 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 106 C: 87 G: 69 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1061 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 323 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1061 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 110 C: 142 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1062 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 322 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1062 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 116 C: 83 G: 84 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1063 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 321 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1063 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 171 C: 107 G: 72 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1064 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 320 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1064 Contig length: 313 Avg. contig coverage: 1 Consensus contains: A: 94 C: 56 G: 81 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 313 Reads contain 313 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1065 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 319 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1065 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 57 C: 40 G: 58 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1066 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 318 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1066 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 121 C: 77 G: 51 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1067 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 317 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1067 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 135 C: 73 G: 84 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1068 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 316 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1068 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 135 C: 98 G: 104 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1069 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 315 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1069 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 107 C: 96 G: 140 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1070 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 314 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1070 Contig length: 108 Avg. contig coverage: 1 Consensus contains: A: 35 C: 2 G: 45 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 108 Reads contain 108 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1071 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 313 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1071 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 89 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1072 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 312 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1072 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 141 C: 122 G: 122 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1073 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 311 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1073 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 91 C: 80 G: 75 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1074 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 310 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1074 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 130 C: 106 G: 104 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1075 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 309 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1075 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 95 C: 68 G: 143 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1076 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 308 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1076 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 139 C: 101 G: 142 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1077 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 307 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1077 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 114 C: 82 G: 109 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1078 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 306 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1078 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 103 C: 103 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 399 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1079 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 305 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1079 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 190 C: 98 G: 137 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1080 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 304 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1080 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 65 C: 95 G: 93 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1081 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 303 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1081 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 133 C: 123 G: 90 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1082 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 302 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1082 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 120 C: 100 G: 88 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1083 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 301 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1083 Contig length: 424 Avg. contig coverage: 1 Consensus contains: A: 121 C: 74 G: 93 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 424 Reads contain 424 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1084 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 300 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1084 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 107 C: 43 G: 47 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1085 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 299 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1085 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 143 C: 125 G: 121 T: 113 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 502 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1086 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 298 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1086 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 120 C: 160 G: 92 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1087 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 297 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1087 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 156 C: 89 G: 130 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1088 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 296 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1088 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 87 C: 91 G: 122 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1089 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 295 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1089 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 102 C: 81 G: 151 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1090 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 294 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1090 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 149 C: 116 G: 116 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1091 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 293 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1091 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 32 C: 39 G: 40 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1092 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 292 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1092 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 124 C: 63 G: 88 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1093 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 291 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1093 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 84 G: 98 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1094 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 290 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1094 Contig length: 482 Avg. contig coverage: 1 Consensus contains: A: 119 C: 97 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 482 Reads contain 482 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1095 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 289 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1095 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 152 C: 93 G: 115 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1096 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 288 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1096 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 74 C: 88 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1097 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 287 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1097 Contig length: 462 Avg. contig coverage: 1 Consensus contains: A: 161 C: 110 G: 70 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 462 Reads contain 462 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1098 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 286 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1098 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 53 G: 126 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1099 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 285 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1099 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 132 C: 94 G: 114 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 284 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1100 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 124 C: 152 G: 95 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 283 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1101 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 165 C: 112 G: 148 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 282 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1102 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 95 C: 72 G: 92 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 281 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1103 Contig length: 341 Avg. contig coverage: 1 Consensus contains: A: 103 C: 52 G: 62 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 341 Reads contain 341 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 280 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1104 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 72 C: 88 G: 81 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 279 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1105 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 119 C: 55 G: 97 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 278 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1106 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 106 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 277 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1107 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 97 C: 98 G: 111 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 276 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1108 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 131 C: 107 G: 96 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 426 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 275 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1109 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 74 C: 75 G: 64 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 274 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1110 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 83 C: 77 G: 97 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 273 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1111 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 109 C: 61 G: 77 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 272 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1112 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 51 C: 32 G: 72 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 271 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1113 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 52 T: 59 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 248 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 270 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1114 Contig length: 380 Avg. contig coverage: 1 Consensus contains: A: 133 C: 74 G: 82 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 380 Reads contain 380 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 269 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1115 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 99 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 268 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1116 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 105 C: 97 G: 70 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 267 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1117 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 54 C: 49 G: 55 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 266 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1118 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 116 C: 80 G: 77 T: 110 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 383 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 265 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1119 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 79 C: 62 G: 75 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 264 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1120 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 131 C: 81 G: 53 T: 90 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 355 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 263 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1121 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 164 C: 108 G: 146 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 262 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1122 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 138 C: 75 G: 65 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 261 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1123 Contig length: 181 Avg. contig coverage: 1 Consensus contains: A: 42 C: 28 G: 49 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 181 Reads contain 181 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 260 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1124 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 102 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 259 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1125 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 66 G: 80 T: 93 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 333 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 258 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1126 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 52 G: 88 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 257 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1127 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 112 C: 92 G: 60 T: 94 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 358 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 256 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1128 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 40 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 255 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1129 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 90 C: 58 G: 80 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 254 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1130 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 104 C: 64 G: 89 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 253 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1131 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 96 C: 91 G: 59 T: 76 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 252 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1132 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 116 C: 61 G: 80 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 251 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1133 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 96 C: 77 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 250 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1134 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 65 C: 64 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 249 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1135 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 46 C: 69 G: 109 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 248 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1136 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 69 C: 81 G: 81 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 247 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1137 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 135 C: 87 G: 120 T: 144 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 486 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 246 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1138 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 92 C: 57 G: 69 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 310 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 245 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1139 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 98 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 244 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1140 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 100 C: 97 G: 75 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 243 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1141 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 106 C: 71 G: 130 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 242 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1142 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 125 C: 74 G: 110 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 241 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1143 Contig length: 180 Avg. contig coverage: 1 Consensus contains: A: 42 C: 36 G: 70 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 180 Reads contain 180 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 240 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1144 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 108 C: 78 G: 100 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 239 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1145 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 78 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 238 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1146 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 110 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 237 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1147 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 135 C: 82 G: 85 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 236 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1148 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 100 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 484 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 235 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1149 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 103 C: 73 G: 118 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 408 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 234 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1150 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 85 C: 86 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 233 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1151 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 53 C: 70 G: 111 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 232 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1152 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 73 C: 65 G: 68 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 231 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1153 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 81 C: 93 G: 129 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 230 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1154 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 70 C: 103 G: 76 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 229 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1155 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 147 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 228 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1156 Contig length: 157 Avg. contig coverage: 1 Consensus contains: A: 31 C: 55 G: 39 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 157 Reads contain 157 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 227 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1157 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 116 C: 92 G: 121 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 226 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1158 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 67 C: 53 G: 82 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 225 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1159 Contig length: 117 Avg. contig coverage: 1 Consensus contains: A: 42 C: 21 G: 12 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 117 Reads contain 117 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 224 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1160 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 75 C: 48 G: 93 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 223 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1161 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 101 C: 74 G: 90 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 373 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 222 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1162 Contig length: 309 Avg. contig coverage: 1 Consensus contains: A: 74 C: 67 G: 82 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 309 Reads contain 309 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 221 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1163 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 102 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 220 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1164 Contig length: 210 Avg. contig coverage: 1 Consensus contains: A: 79 C: 39 G: 42 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 210 Reads contain 210 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 219 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1165 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 98 C: 82 G: 75 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 218 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1166 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 131 C: 82 G: 88 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 217 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1167 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 47 C: 30 G: 40 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 216 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1168 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 121 C: 109 G: 108 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 215 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1169 Contig length: 270 Avg. contig coverage: 1 Consensus contains: A: 71 C: 75 G: 72 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 270 Reads contain 270 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 214 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1170 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 58 C: 47 G: 65 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 213 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1171 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 141 C: 88 G: 69 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 212 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1172 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 65 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 211 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1173 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 79 G: 76 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 210 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1174 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 98 C: 138 G: 110 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 209 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1175 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 139 C: 160 G: 99 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 208 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1176 Contig length: 264 Avg. contig coverage: 1 Consensus contains: A: 86 C: 33 G: 51 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 264 Reads contain 264 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 207 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1177 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 69 C: 95 G: 68 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 206 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1178 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 85 C: 58 G: 93 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 205 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1179 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 118 C: 122 G: 88 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 204 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1180 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 95 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 395 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 203 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1181 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 84 C: 83 G: 66 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 202 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1182 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 160 C: 66 G: 64 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 201 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1183 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 111 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 479 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 200 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1184 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 75 G: 66 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 199 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1185 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 94 C: 70 G: 93 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 198 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1186 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 122 G: 98 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 197 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1187 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 43 C: 54 G: 69 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 196 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1188 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 54 C: 53 G: 58 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 195 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1189 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 93 G: 84 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 194 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1190 Contig length: 303 Avg. contig coverage: 1 Consensus contains: A: 75 C: 71 G: 69 T: 82 N: 6 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 303 Reads contain 297 bases, 6 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 193 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1191 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 85 C: 95 G: 68 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 338 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 192 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1192 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 79 C: 90 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 191 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1193 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 61 C: 153 G: 63 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 190 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1194 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 99 C: 81 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 189 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1195 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 120 C: 99 G: 78 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 188 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1196 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 134 C: 126 G: 107 T: 155 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 522 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 187 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1197 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 105 G: 109 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 186 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1198 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 77 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 185 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1199 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 97 C: 85 G: 69 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 365 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 184 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1200 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 116 C: 60 G: 104 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 183 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1201 Contig length: 147 Avg. contig coverage: 1 Consensus contains: A: 31 C: 30 G: 49 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 147 Reads contain 147 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 182 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1202 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 181 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1203 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 50 G: 74 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 180 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1204 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 81 G: 67 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 179 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1205 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 87 C: 93 G: 102 T: 89 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 371 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 178 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1206 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 92 C: 54 G: 124 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 177 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1207 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 88 C: 87 G: 81 T: 75 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 331 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 176 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1208 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 83 C: 88 G: 55 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 175 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1209 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 156 C: 87 G: 95 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 174 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1210 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 80 C: 87 G: 84 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 173 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1211 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 97 C: 95 G: 77 T: 85 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 354 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 172 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1212 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 74 C: 29 G: 27 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 171 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1213 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 106 C: 109 G: 84 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 409 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 170 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1214 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 103 C: 90 G: 100 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 169 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1215 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 113 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 168 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1216 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 137 C: 98 G: 81 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 167 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1217 Contig length: 177 Avg. contig coverage: 1 Consensus contains: A: 53 C: 29 G: 51 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 177 Reads contain 177 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 166 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1218 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 162 C: 82 G: 56 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 165 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1219 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 81 C: 65 G: 57 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 164 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1220 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 117 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 526 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 163 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1221 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 110 C: 140 G: 123 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 162 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1222 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 120 C: 84 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 161 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1223 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 19 C: 15 G: 58 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 160 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1224 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 74 C: 51 G: 71 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 159 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1225 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 137 C: 122 G: 94 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 158 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1226 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 74 C: 98 G: 90 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 157 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1227 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 98 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 156 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1228 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 116 C: 106 G: 72 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 155 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1229 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 134 C: 90 G: 107 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 154 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1230 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 105 C: 109 G: 123 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 153 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1231 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 111 C: 103 G: 130 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 152 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1232 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 87 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 151 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1233 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 105 C: 118 G: 88 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 150 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1234 Contig length: 261 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 74 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 261 Reads contain 261 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 149 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1235 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 148 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1236 Contig length: 315 Avg. contig coverage: 1 Consensus contains: A: 73 C: 81 G: 72 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 315 Reads contain 315 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 147 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1237 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 123 C: 92 G: 106 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 146 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1238 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 83 C: 121 G: 41 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 145 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1239 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 104 C: 46 G: 53 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 144 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1240 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 55 C: 25 G: 33 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 143 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1241 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 112 C: 73 G: 85 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 142 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1242 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 28 C: 43 G: 30 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 141 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1243 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 86 G: 84 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 140 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1244 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 91 C: 163 G: 57 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 139 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1245 Contig length: 350 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 82 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 350 Reads contain 350 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 138 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1246 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 86 G: 81 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 137 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1247 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 145 C: 123 G: 75 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 136 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1248 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 82 G: 66 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 135 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1249 Contig length: 232 Avg. contig coverage: 1 Consensus contains: A: 70 C: 45 G: 59 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 232 Reads contain 232 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 134 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1250 Contig length: 526 Avg. contig coverage: 1 Consensus contains: A: 149 C: 98 G: 141 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 526 Reads contain 526 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 133 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1251 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 64 C: 27 G: 37 T: 48 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 132 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1252 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 125 C: 141 G: 76 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 131 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1253 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 67 C: 100 G: 87 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 130 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1254 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 82 C: 49 G: 117 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 129 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1255 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 88 C: 88 G: 121 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 128 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1256 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 70 C: 36 G: 60 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 127 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1257 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 118 C: 106 G: 82 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 126 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1258 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 88 C: 143 G: 69 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 125 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1259 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 88 C: 83 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 124 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1260 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 119 C: 109 G: 80 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 123 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1261 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 128 C: 97 G: 105 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 439 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 122 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1262 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 146 C: 65 G: 58 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 121 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1263 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 165 C: 75 G: 68 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 120 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1264 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 71 C: 86 G: 91 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 119 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1265 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 114 C: 121 G: 100 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 118 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1266 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 94 C: 117 G: 122 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 117 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1267 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 111 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 116 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1268 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 40 C: 27 G: 31 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 115 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1269 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 117 G: 87 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 114 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1270 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 100 C: 77 G: 74 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 113 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1271 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 67 C: 63 G: 111 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 112 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1272 Contig length: 547 Avg. contig coverage: 1 Consensus contains: A: 119 C: 151 G: 112 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 547 Reads contain 547 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 111 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1273 Contig length: 242 Avg. contig coverage: 1 Consensus contains: A: 56 C: 36 G: 81 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 242 Reads contain 242 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 110 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1274 Contig length: 116 Avg. contig coverage: 1 Consensus contains: A: 37 C: 27 G: 31 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 116 Reads contain 116 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 109 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1275 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 48 C: 144 G: 79 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 108 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1276 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 109 C: 101 G: 123 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 107 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1277 Contig length: 149 Avg. contig coverage: 1 Consensus contains: A: 46 C: 22 G: 40 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 149 Reads contain 149 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 106 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1278 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 86 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 105 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1279 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 69 C: 79 G: 86 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 104 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1280 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 60 C: 29 G: 9 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 103 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1281 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 51 C: 62 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 102 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1282 Contig length: 219 Avg. contig coverage: 1 Consensus contains: A: 58 C: 56 G: 64 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 219 Reads contain 219 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 101 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1283 Contig length: 252 Avg. contig coverage: 1 Consensus contains: A: 72 C: 68 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 252 Reads contain 252 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 100 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1284 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 46 C: 56 G: 57 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 99 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1285 Contig length: 103 Avg. contig coverage: 1 Consensus contains: A: 32 C: 22 G: 31 T: 18 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 103 Reads contain 103 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 98 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1286 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 27 C: 26 G: 31 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 97 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1287 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 138 C: 91 G: 115 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 96 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1288 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 162 C: 48 G: 149 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 95 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1289 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 68 C: 60 G: 51 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 94 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1290 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 56 C: 65 G: 80 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 93 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1291 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 47 C: 61 G: 63 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 92 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1292 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 110 C: 128 G: 120 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 91 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1293 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 67 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 90 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1294 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 112 C: 138 G: 107 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 89 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1295 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 73 C: 49 G: 80 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 88 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1296 Contig length: 174 Avg. contig coverage: 1 Consensus contains: A: 43 C: 38 G: 56 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 174 Reads contain 174 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 87 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1297 Contig length: 87 Avg. contig coverage: 1 Consensus contains: A: 19 C: 24 G: 18 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 87 Reads contain 87 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 86 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1298 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 125 C: 77 G: 49 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 85 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1299 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 101 C: 68 G: 94 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 84 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1300 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 144 C: 93 G: 80 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 83 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1301 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 40 C: 25 G: 39 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 82 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1302 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 72 C: 46 G: 61 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 81 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1303 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 82 C: 64 G: 98 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 80 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1304 Contig length: 240 Avg. contig coverage: 1 Consensus contains: A: 52 C: 54 G: 61 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 240 Reads contain 240 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 79 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1305 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 132 C: 109 G: 82 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 78 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1306 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 68 C: 46 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 77 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1307 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 72 C: 50 G: 60 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 76 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1308 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 76 C: 72 G: 88 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 337 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 75 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1309 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 50 C: 32 G: 44 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 74 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1310 Contig length: 135 Avg. contig coverage: 1 Consensus contains: A: 34 C: 33 G: 38 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 135 Reads contain 135 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 73 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1311 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 33 C: 39 G: 28 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 72 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1312 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 25 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 71 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1313 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 129 C: 75 G: 47 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 70 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1314 Contig length: 235 Avg. contig coverage: 1 Consensus contains: A: 63 C: 47 G: 58 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 235 Reads contain 235 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 69 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1315 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 117 C: 61 G: 71 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 68 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1316 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 151 C: 119 G: 81 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 67 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1317 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 112 C: 110 G: 96 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 66 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1318 Contig length: 306 Avg. contig coverage: 1 Consensus contains: A: 66 C: 45 G: 102 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 306 Reads contain 305 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 65 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1319 Contig length: 540 Avg. contig coverage: 1 Consensus contains: A: 149 C: 129 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 540 Reads contain 540 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 64 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1320 Contig length: 185 Avg. contig coverage: 1 Consensus contains: A: 76 C: 27 G: 32 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 185 Reads contain 185 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 63 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1321 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 62 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1322 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 65 C: 35 G: 44 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 61 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1323 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 139 C: 78 G: 134 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 60 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1324 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 56 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 59 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1325 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 85 C: 102 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 58 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1326 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 136 C: 77 G: 76 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 57 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1327 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 104 T: 172 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 542 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 56 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1328 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 110 C: 141 G: 94 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 55 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1329 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 95 C: 111 G: 113 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 54 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1330 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 107 C: 81 G: 107 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 53 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1331 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 79 C: 69 G: 96 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 52 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1332 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 92 C: 60 G: 135 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 51 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1333 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 87 C: 80 G: 78 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 50 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1334 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 139 C: 91 G: 175 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 49 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1335 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 84 C: 94 G: 70 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 48 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1336 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 71 C: 50 G: 49 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 47 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1337 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 116 C: 107 G: 45 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 46 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1338 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 120 C: 63 G: 93 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 45 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1339 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 104 C: 71 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 44 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1340 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 87 C: 85 G: 62 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 43 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1341 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 87 C: 78 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 42 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1342 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 78 C: 92 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 41 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1343 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 111 C: 65 G: 114 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 40 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1344 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 69 G: 81 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 39 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1345 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 101 C: 109 G: 96 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 38 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1346 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 90 C: 111 G: 76 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 37 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1347 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 120 C: 60 G: 70 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 36 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1348 Contig length: 255 Avg. contig coverage: 1 Consensus contains: A: 59 C: 41 G: 49 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 255 Reads contain 255 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 35 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1349 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 138 C: 121 G: 82 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 34 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1350 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 92 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 33 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1351 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 157 C: 124 G: 76 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 32 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1352 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 138 C: 54 G: 88 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 31 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1353 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 105 C: 141 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 30 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1354 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 158 C: 101 G: 112 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 29 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1355 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 109 C: 75 G: 107 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 28 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1356 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 139 C: 93 G: 126 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 27 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1357 Contig length: 602 Avg. contig coverage: 1 Consensus contains: A: 162 C: 153 G: 164 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 602 Reads contain 602 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 26 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1358 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 111 C: 72 G: 99 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 25 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1359 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 100 C: 62 G: 73 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 24 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1360 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 175 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 23 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1361 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 124 C: 137 G: 117 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 22 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1362 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 123 C: 58 G: 84 T: 139 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 404 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 21 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1363 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 66 C: 77 G: 84 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 20 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1364 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 126 C: 129 G: 81 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 454 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 19 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1365 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 103 C: 88 G: 43 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 18 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1366 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 125 C: 71 G: 73 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 17 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1367 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 183 C: 98 G: 144 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 16 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1368 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 82 C: 41 G: 54 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 15 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1369 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 46 C: 43 G: 59 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 14 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1370 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 165 C: 113 G: 54 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 13 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1371 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 106 G: 69 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 12 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1372 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 125 C: 137 G: 156 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 11 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1373 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 192 C: 135 G: 118 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 10 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1374 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 146 C: 119 G: 122 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 9 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1375 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 93 C: 71 G: 69 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 8 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1376 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 89 C: 88 G: 97 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 7 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1377 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 143 C: 136 G: 119 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 6 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1378 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 93 C: 111 G: 90 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 5 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1379 Contig length: 580 Avg. contig coverage: 1 Consensus contains: A: 151 C: 125 G: 162 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 580 Reads contain 580 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 4 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1380 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 131 C: 88 G: 93 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 3 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1381 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 126 C: 144 G: 87 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1382 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 2 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1382 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 90 C: 72 G: 89 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1383 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1383 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 122 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: step1_log/step1_info_contigstats_pass.1.txt Saving read tag list to file: step1_log/step1_info_readtaglist.1.txt Saving contig tag list to file: step1_log/step1_info_consensustaglist.1.txt Saving project contig<->read list to file: step1_log/step1_info_contigreadlist_pass.1.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: step1_info/step1_info_contigstats.txt Localtime: Thu Jul 15 12:00:00 2010 Saving read tag list to file: step1_info/step1_info_readtaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contig tag list to file: step1_info/step1_info_consensustaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project contig<->read list to file: step1_info/step1_info_contigreadlist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to file: step1_results/step1_out.caf Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to directory: step1_results/step1_out.gap4da (first deleting old directory) (now creating new directory) (saving contigs) Done. Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to FASTA file: step1_results/step1_out.unpadded.fasta Saving padded contigs to FASTA file: step1_results/step1_out.padded.fasta Saving contig qualities to FASTA quality file: step1_results/step1_out.unpadded.fasta.qual Saving padded contig qualities to FASTA quality file: step1_results/step1_out.padded.fasta.qual Localtime: Thu Jul 15 12:00:00 2010 Saving SNP analysis to file: step1_info/step1_info_snpanalysis.txt Writing CAF for reads for strain default Finished step 1 Loading parameters from file: me_step2.par Starting step 2: assembling each strain for itself Used parameter settings: General (-GE): Project name (pro) : step1 Load job (lj) : CAF file (caf) Filecheck only (fo) : No External quality (eq) : from SCF (scf) Ext. qual. override (eqo) : No Discard reads on e.q. error (droeqe): No Read naming scheme (rns) : Sanger Institute (sanger) Merge with XML trace info (mxti) : No Use template information (uti) : No EST-assembly start step (ess) : 1 Assembly options (-AS): Minimum read length (mrl) : 80 Number of passes (nop) : 1 Skim each pass (sep) : Yes Maximum number of RMB break loops (rbl) : 30 Spoiler detection (sd) : No Last pass only (sdlpo) : Yes Base default quality (bdq) : Yes Use genomic pathfinder (ugpf) : Yes Use emergency search stop (uess) : Yes ESS partner depth (esspd) : 500 Use emergency blacklist (uebl) : Yes Use max. contig build time (umcbt) : No Build time in seconds (bts) : 10000 Strain and backbone options (-SB): Load straindata (lsd) : Yes Load backbone (lb) : No Start backbone usage in pass (sbuip): 1 Backbone strain name (bsn) : (none) Backbone file type (bft) : FASTA file (fasta) Backbone rail length (brl) : 2500 Backbone base quality (bbq) : 0 Also build new contigs (abnc) : Yes Dataprocessing options (-DP): Use read extensions (ure) : No Read extension window length (rewl) : 30 Read extension w. maxerrors (rewme) : 2 First extension in pass (feip) : 0 Last extension in pass (leip) : 0 Tag poly A/T at ends (tpae) : No Polybase window length (pbwl) : 7 Polybase window maxerrors (pbwme) : 2 Polyb. window grace distance (pbwgc): 9 Clipping options (-CL): Possible vector leftover clip (pvc) : Yes maximum len allowed (pvcmla) : 12 Quality clip (qc) : Yes Minimum quality (qcmq) : 20 Window length (qcwl) : 30 Masked bases clip (mbc) : Yes Gap size (mbcgs) : 15 Max front gap (mbcmfg) : 30 Max end gap (mbcmeg) : 60 Ensure minimum left clip (emlc) : Yes Minimum left clip req. (mlcr) : 25 Set minimum left clip to (smlc) : 30 Parameters for SKIM algorithm (-SK): Bases per hash (bph) : 16 Hash save stepping (hss) : 4 Percent required (pr) : 25 Maximum hashes in memory (mhim) : 15000000 Max hits per read (mhpr) : 200 Align parameters for Smith-Waterman align (-AL): Bandwidth in percent (bip) : 15 Bandwidth max (bmax) : 100 Bandwidth min (bmin) : 25 Minimum score (ms) : 30 Minimum overlap (mo) : 30 Minimum relative score in % (mrs) : 75 Extra gap penalty (egp) : Yes extra gap penalty level (egpl) : low Max. egp in percent (megpp) : 100 Contig parameters (-CO): Name prefix (np) : step1 Error analysis (an) : SCF signal (signal) Reject on drop in relative alignment score (%) : 15 Max. error rate in dangerous zones in % (dmer) : 1 Mark repeats (mr) : Yes Assume SNP instead of repeats (asir) : No Minimum reads per group needed for tagging (mrpg) : 2 Minimum neighbour quality needed for tagging (mnq) : 20 Minimum Group Quality needed for RMB Tagging (mgqrt) : 30 End-read Marking Exclusion Area in bases (emea) : 15 Also mark gap bases (amgb) : Yes Also mark gap bases - even multicolumn (amgbemc) : Yes Also mark gap bases - need both strands (amgbnbs): Yes Default template insert size minimum (dismin) : 500 Default template insert size maximum (dismax) : 5000 Edit options (-ED): Automatic contig editing (ace) : No Strict editing mode (sem) : No Confirmation threshold in percent (ct): 50 Directories (-DI): When loading EXP files: When loading SCF files: For writing log files : step1_log For writing gap4 DA res.: step1_out Input files (-FI): When loading EXP fofn : step1_in.fofn When loading project from PHD : step1_in.phd.1 When loading project from CAF : step1_in.caf When loading sequences from FASTA : step1_in.fasta When loading qualities from FASTA quality: step1_in.fasta.qual When loading straindata : step1_straindata_in.txt When loading XML trace info files : step1_traceinfo_in.xml When loading backbone from CAF : step1_backbone_in.caf When loading backbone from GenBank : step1_backbone_in.gbf When loading backbone from FASTA : step1_backbone_in.fasta Output files (-OUTPUT/-OUT): Result files: Saved as CAF (orc): Yes Saved as FASTA (orf): Yes Saved as GAP4 (directed assembly) (org): Yes Saved as phrap ACE (ora): No Saved as HTML (orh): No Saved as Transposed Contig Summary (ors): No Saved as simple text format (ort): No Temporary result files: Saved as CAF (otc): No Saved as FASTA (otf): No Saved as GAP4 (directed assembly) (otg): No Saved as phrap ACE (ota): No Saved as HTML (oth): No Saved as Transposed Contig Summary(ots): No Saved as simple text format (ott): No Extended temporary result files: Saved as CAF (oetc): No Saved as FASTA (oetf): No Saved as GAP4 (directed assembly) (oetg): No Saved as phrap ACE (oeta): No Saved as HTML (oeth): No Save also singlets (oetas): No Alignment output customisation: TEXT characters per line (tcpl): 60 HTML characters per line (hcpl): 60 TEXT characters per line (tegfc): ' ' HTML characters per line (hegfc): ' ' File / directory names: CAF : step1_out.caf FASTA : step1_out.unpadded.fasta FASTA quality : step1_out.unpadded.fasta.qual FASTA (padded) : step1_out.padded.fasta FASTA qual.(pad): step1_out.padded.fasta.qual GAP4 (directory): step1_out.gap4da ACE : step1_out.ace HTML : step1_out.html Simple text : step1_out.txt TCS overview : step1_out.tcs Assembly of strain step1_snpsinSTRAIN_default.caf(default) Creating directory default_log ... done. Creating directory default_results ... done. Creating directory default_info ... done. Localtime: Thu Jul 15 12:00:00 2010 Loading project from CAF file: step1_snpsinSTRAIN_default.caf [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Loading straindata. Building hash table ... done. Read 0 straindata lines. Warning: gnlti136477498 has no strain. Using default strain. Warning: gnlti136477499 has no strain. Using default strain. Warning: gnlti136477501 has no strain. Using default strain. Warning: gnlti136477505 has no strain. Using default strain. Warning: gnlti136477506 has no strain. Using default strain. Warning: gnlti136477508 has no strain. Using default strain. Warning: gnlti136477509 has no strain. Using default strain. Warning: gnlti136477510 has no strain. Using default strain. Warning: gnlti136477515 has no strain. Using default strain. Warning: gnlti136477523 has no strain. Using default strain. Warning: gnlti136477525 has no strain. Using default strain. Warning: gnlti136477528 has no strain. Using default strain. Warning: gnlti136477529 has no strain. Using default strain. Warning: gnlti136477533 has no strain. Using default strain. Warning: gnlti136477535 has no strain. Using default strain. Warning: gnlti136477539 has no strain. Using default strain. Warning: gnlti136477545 has no strain. Using default strain. Warning: gnlti136477549 has no strain. Using default strain. Warning: gnlti136477555 has no strain. Using default strain. Warning: gnlti136477557 has no strain. Using default strain. Warning: gnlti136477559 has no strain. Using default strain. Warning: gnlti136477560 has no strain. Using default strain. Warning: gnlti136477561 has no strain. Using default strain. Warning: gnlti136477562 has no strain. Using default strain. Warning: gnlti136477568 has no strain. Using default strain. Warning: gnlti136477570 has no strain. Using default strain. Warning: gnlti136477573 has no strain. Using default strain. Warning: gnlti136477575 has no strain. Using default strain. Warning: gnlti136477579 has no strain. Using default strain. Warning: gnlti136477580 has no strain. Using default strain. Warning: gnlti136477588 has no strain. Using default strain. Warning: gnlti136477591 has no strain. Using default strain. Warning: gnlti136477592 has no strain. Using default strain. Warning: gnlti136477593 has no strain. Using default strain. Warning: gnlti136477605 has no strain. Using default strain. Warning: gnlti136477609 has no strain. Using default strain. Warning: gnlti136477615 has no strain. Using default strain. Warning: gnlti136477616 has no strain. Using default strain. Warning: gnlti136477617 has no strain. Using default strain. Warning: gnlti136477618 has no strain. Using default strain. Warning: gnlti136477619 has no strain. Using default strain. Warning: gnlti136477628 has no strain. Using default strain. Warning: gnlti136477629 has no strain. Using default strain. Warning: gnlti136477631 has no strain. Using default strain. Warning: gnlti136477637 has no strain. Using default strain. Warning: gnlti136477642 has no strain. Using default strain. Warning: gnlti136477657 has no strain. Using default strain. Warning: gnlti136477662 has no strain. Using default strain. Warning: gnlti136477666 has no strain. Using default strain. Warning: gnlti136477670 has no strain. Using default strain. Warning: gnlti136477671 has no strain. Using default strain. Warning: gnlti136477672 has no strain. Using default strain. Warning: gnlti136477673 has no strain. Using default strain. Warning: gnlti136477675 has no strain. Using default strain. Warning: gnlti136477676 has no strain. Using default strain. Warning: gnlti136477677 has no strain. Using default strain. Warning: gnlti136477679 has no strain. Using default strain. Warning: gnlti136477682 has no strain. Using default strain. Warning: gnlti136477684 has no strain. Using default strain. Warning: gnlti136477688 has no strain. Using default strain. Warning: gnlti136477693 has no strain. Using default strain. Warning: gnlti136477699 has no strain. Using default strain. Warning: gnlti136477702 has no strain. Using default strain. Warning: gnlti136477703 has no strain. Using default strain. Warning: gnlti136477718 has no strain. Using default strain. Warning: gnlti136477722 has no strain. Using default strain. Warning: gnlti136477726 has no strain. Using default strain. Warning: gnlti136477728 has no strain. Using default strain. Warning: gnlti136477732 has no strain. Using default strain. Warning: gnlti136477734 has no strain. Using default strain. Warning: gnlti136477739 has no strain. Using default strain. Warning: gnlti136477746 has no strain. Using default strain. Warning: gnlti136477752 has no strain. Using default strain. Warning: gnlti136477753 has no strain. Using default strain. Warning: gnlti136477755 has no strain. Using default strain. Warning: gnlti136477760 has no strain. Using default strain. Warning: gnlti136477772 has no strain. Using default strain. Warning: gnlti136477778 has no strain. Using default strain. Warning: gnlti136477782 has no strain. Using default strain. Warning: gnlti136477783 has no strain. Using default strain. Warning: gnlti136477784 has no strain. Using default strain. Warning: gnlti136477785 has no strain. Using default strain. Warning: gnlti136477786 has no strain. Using default strain. Warning: gnlti136477787 has no strain. Using default strain. Warning: gnlti136477791 has no strain. Using default strain. Warning: gnlti136477793 has no strain. Using default strain. Warning: gnlti136477795 has no strain. Using default strain. Warning: gnlti136477796 has no strain. Using default strain. Warning: gnlti136477810 has no strain. Using default strain. Warning: gnlti136477813 has no strain. Using default strain. Warning: gnlti136477817 has no strain. Using default strain. Warning: gnlti136477822 has no strain. Using default strain. Warning: gnlti136477838 has no strain. Using default strain. Warning: gnlti136477851 has no strain. Using default strain. Warning: gnlti136477862 has no strain. Using default strain. Warning: gnlti136477876 has no strain. Using default strain. Warning: gnlti136477880 has no strain. Using default strain. Warning: gnlti136477884 has no strain. Using default strain. Warning: gnlti136477885 has no strain. Using default strain. Warning: gnlti136477888 has no strain. Using default strain. Warning: gnlti136477889 has no strain. Using default strain. Warning: gnlti136477890 has no strain. Using default strain. Warning: gnlti136477891 has no strain. Using default strain. Warning: gnlti136477892 has no strain. Using default strain. Warning: gnlti136477894 has no strain. Using default strain. Warning: gnlti136477897 has no strain. Using default strain. Warning: gnlti136477900 has no strain. Using default strain. Warning: gnlti136477901 has no strain. Using default strain. Warning: gnlti136477902 has no strain. Using default strain. Warning: gnlti136477904 has no strain. Using default strain. Warning: gnlti136477907 has no strain. Using default strain. Warning: gnlti136477916 has no strain. Using default strain. Warning: gnlti136477918 has no strain. Using default strain. Warning: gnlti136477926 has no strain. Using default strain. Warning: gnlti136477930 has no strain. Using default strain. Warning: gnlti136477933 has no strain. Using default strain. Warning: gnlti136477935 has no strain. Using default strain. Warning: gnlti136477937 has no strain. Using default strain. Warning: gnlti136477938 has no strain. Using default strain. Warning: gnlti136477939 has no strain. Using default strain. Warning: gnlti136477940 has no strain. Using default strain. Warning: gnlti136477943 has no strain. Using default strain. Warning: gnlti136477947 has no strain. Using default strain. Warning: gnlti136477955 has no strain. Using default strain. Warning: gnlti136477961 has no strain. Using default strain. Warning: gnlti136477962 has no strain. Using default strain. Warning: gnlti136477967 has no strain. Using default strain. Warning: gnlti136477968 has no strain. Using default strain. Warning: gnlti136477971 has no strain. Using default strain. Warning: gnlti136477972 has no strain. Using default strain. Warning: gnlti136477977 has no strain. Using default strain. Warning: gnlti136477978 has no strain. Using default strain. Warning: gnlti136477981 has no strain. Using default strain. Warning: gnlti136477983 has no strain. Using default strain. Warning: gnlti136477984 has no strain. Using default strain. Warning: gnlti136477987 has no strain. Using default strain. Warning: gnlti136477988 has no strain. Using default strain. Warning: gnlti136477989 has no strain. Using default strain. Warning: gnlti136477994 has no strain. Using default strain. Warning: gnlti136477995 has no strain. Using default strain. Warning: gnlti136477997 has no strain. Using default strain. Warning: gnlti136478003 has no strain. Using default strain. Warning: gnlti136478006 has no strain. Using default strain. Warning: gnlti136478008 has no strain. Using default strain. Warning: gnlti136478011 has no strain. Using default strain. Warning: gnlti136478012 has no strain. Using default strain. Warning: gnlti136478015 has no strain. Using default strain. Warning: gnlti136478019 has no strain. Using default strain. Warning: gnlti136478020 has no strain. Using default strain. Warning: gnlti136478024 has no strain. Using default strain. Warning: gnlti136478031 has no strain. Using default strain. Warning: gnlti136478032 has no strain. Using default strain. Warning: gnlti136478033 has no strain. Using default strain. Warning: gnlti136478037 has no strain. Using default strain. Warning: gnlti136478042 has no strain. Using default strain. Warning: gnlti136478047 has no strain. Using default strain. Warning: gnlti136478048 has no strain. Using default strain. Warning: gnlti136478051 has no strain. Using default strain. Warning: gnlti136478053 has no strain. Using default strain. Warning: gnlti136478057 has no strain. Using default strain. Warning: gnlti136478064 has no strain. Using default strain. Warning: gnlti136478070 has no strain. Using default strain. Warning: gnlti136478072 has no strain. Using default strain. Warning: gnlti136478078 has no strain. Using default strain. Warning: gnlti136478079 has no strain. Using default strain. Warning: gnlti136478081 has no strain. Using default strain. Warning: gnlti136478082 has no strain. Using default strain. Warning: gnlti136478084 has no strain. Using default strain. Warning: gnlti136478090 has no strain. Using default strain. Warning: gnlti136478092 has no strain. Using default strain. Warning: gnlti136478094 has no strain. Using default strain. Warning: gnlti136478100 has no strain. Using default strain. Warning: gnlti136478102 has no strain. Using default strain. Warning: gnlti136478106 has no strain. Using default strain. Warning: gnlti136478109 has no strain. Using default strain. Warning: gnlti136478111 has no strain. Using default strain. Warning: gnlti136478116 has no strain. Using default strain. Warning: gnlti136478117 has no strain. Using default strain. Warning: gnlti136478120 has no strain. Using default strain. Warning: gnlti136478121 has no strain. Using default strain. Warning: gnlti136478127 has no strain. Using default strain. Warning: gnlti136478135 has no strain. Using default strain. Warning: gnlti136478139 has no strain. Using default strain. Warning: gnlti136478144 has no strain. Using default strain. Warning: gnlti136478149 has no strain. Using default strain. Warning: gnlti136478151 has no strain. Using default strain. Warning: gnlti136478153 has no strain. Using default strain. Warning: gnlti136478160 has no strain. Using default strain. Warning: gnlti136478166 has no strain. Using default strain. Warning: gnlti136478173 has no strain. Using default strain. Warning: gnlti136478176 has no strain. Using default strain. Warning: gnlti136478177 has no strain. Using default strain. Warning: gnlti136478185 has no strain. Using default strain. Warning: gnlti136478191 has no strain. Using default strain. Warning: gnlti136478194 has no strain. Using default strain. Warning: gnlti136478200 has no strain. Using default strain. Warning: gnlti136478201 has no strain. Using default strain. Warning: gnlti136478205 has no strain. Using default strain. Warning: gnlti136478210 has no strain. Using default strain. Warning: gnlti136478212 has no strain. Using default strain. Warning: gnlti136478215 has no strain. Using default strain. Warning: gnlti136478217 has no strain. Using default strain. Warning: gnlti136478219 has no strain. Using default strain. Warning: gnlti136478220 has no strain. Using default strain. Warning: gnlti136478224 has no strain. Using default strain. Warning: gnlti136478225 has no strain. Using default strain. Warning: gnlti136478235 has no strain. Using default strain. Warning: gnlti136478236 has no strain. Using default strain. Warning: gnlti136478238 has no strain. Using default strain. Warning: gnlti136478242 has no strain. Using default strain. Warning: gnlti136478243 has no strain. Using default strain. Warning: gnlti136478245 has no strain. Using default strain. Warning: gnlti136478246 has no strain. Using default strain. Warning: gnlti136478248 has no strain. Using default strain. Warning: gnlti136478250 has no strain. Using default strain. Warning: gnlti136478255 has no strain. Using default strain. Warning: gnlti136478257 has no strain. Using default strain. Warning: gnlti136478263 has no strain. Using default strain. Warning: gnlti136478264 has no strain. Using default strain. Warning: gnlti136478267 has no strain. Using default strain. Warning: gnlti136478272 has no strain. Using default strain. Warning: gnlti136478273 has no strain. Using default strain. Warning: gnlti136478276 has no strain. Using default strain. Warning: gnlti136478278 has no strain. Using default strain. Warning: gnlti136478279 has no strain. Using default strain. Warning: gnlti136478283 has no strain. Using default strain. Warning: gnlti136478284 has no strain. Using default strain. Warning: gnlti136478286 has no strain. Using default strain. Warning: gnlti136478287 has no strain. Using default strain. Warning: gnlti136478290 has no strain. Using default strain. Warning: gnlti136478291 has no strain. Using default strain. Warning: gnlti136478292 has no strain. Using default strain. Warning: gnlti136478298 has no strain. Using default strain. Warning: gnlti136478301 has no strain. Using default strain. Warning: gnlti136478311 has no strain. Using default strain. Warning: gnlti136478312 has no strain. Using default strain. Warning: gnlti136478313 has no strain. Using default strain. Warning: gnlti136478314 has no strain. Using default strain. Warning: gnlti136478318 has no strain. Using default strain. Warning: gnlti136478323 has no strain. Using default strain. Warning: gnlti136478324 has no strain. Using default strain. Warning: gnlti136478325 has no strain. Using default strain. Warning: gnlti136478326 has no strain. Using default strain. Warning: gnlti136478328 has no strain. Using default strain. Warning: gnlti136478334 has no strain. Using default strain. Warning: gnlti136478335 has no strain. Using default strain. Warning: gnlti136478336 has no strain. Using default strain. Warning: gnlti136478337 has no strain. Using default strain. Warning: gnlti136478341 has no strain. Using default strain. Warning: gnlti136478350 has no strain. Using default strain. Warning: gnlti136478353 has no strain. Using default strain. Warning: gnlti136478354 has no strain. Using default strain. Warning: gnlti136478360 has no strain. Using default strain. Warning: gnlti136478365 has no strain. Using default strain. Warning: gnlti136478366 has no strain. Using default strain. Warning: gnlti136478367 has no strain. Using default strain. Warning: gnlti136478373 has no strain. Using default strain. Warning: gnlti136478374 has no strain. Using default strain. Warning: gnlti136478375 has no strain. Using default strain. Warning: gnlti136478377 has no strain. Using default strain. Warning: gnlti136478378 has no strain. Using default strain. Warning: gnlti136478379 has no strain. Using default strain. Warning: gnlti136478384 has no strain. Using default strain. Warning: gnlti136478389 has no strain. Using default strain. Warning: gnlti136478391 has no strain. Using default strain. Warning: gnlti136478393 has no strain. Using default strain. Warning: gnlti136478394 has no strain. Using default strain. Warning: gnlti136478395 has no strain. Using default strain. Warning: gnlti136478398 has no strain. Using default strain. Warning: gnlti136478400 has no strain. Using default strain. Warning: gnlti136478403 has no strain. Using default strain. Warning: gnlti136478406 has no strain. Using default strain. Warning: gnlti136478413 has no strain. Using default strain. Warning: gnlti136478414 has no strain. Using default strain. Warning: gnlti136478416 has no strain. Using default strain. Warning: gnlti136478419 has no strain. Using default strain. Warning: gnlti136478420 has no strain. Using default strain. Warning: gnlti136478432 has no strain. Using default strain. Warning: gnlti136478433 has no strain. Using default strain. Warning: gnlti136478434 has no strain. Using default strain. Warning: gnlti136478437 has no strain. Using default strain. Warning: gnlti136478438 has no strain. Using default strain. Warning: gnlti136478440 has no strain. Using default strain. Warning: gnlti136478449 has no strain. Using default strain. Warning: gnlti136478450 has no strain. Using default strain. Warning: gnlti136478451 has no strain. Using default strain. Warning: gnlti136478452 has no strain. Using default strain. Warning: gnlti136478454 has no strain. Using default strain. Warning: gnlti136478455 has no strain. Using default strain. Warning: gnlti136478460 has no strain. Using default strain. Warning: gnlti136478461 has no strain. Using default strain. Warning: gnlti136478466 has no strain. Using default strain. Warning: gnlti136478473 has no strain. Using default strain. Warning: gnlti136478479 has no strain. Using default strain. Warning: gnlti136478481 has no strain. Using default strain. Warning: gnlti136478482 has no strain. Using default strain. Warning: gnlti136478483 has no strain. Using default strain. Warning: gnlti136478491 has no strain. Using default strain. Warning: gnlti136478497 has no strain. Using default strain. Warning: gnlti136478499 has no strain. Using default strain. Warning: gnlti136478505 has no strain. Using default strain. Warning: gnlti136478508 has no strain. Using default strain. Warning: gnlti136478510 has no strain. Using default strain. Warning: gnlti136478512 has no strain. Using default strain. Warning: gnlti136478514 has no strain. Using default strain. Warning: gnlti136478515 has no strain. Using default strain. Warning: gnlti136478517 has no strain. Using default strain. Warning: gnlti136478521 has no strain. Using default strain. Warning: gnlti136478522 has no strain. Using default strain. Warning: gnlti136478526 has no strain. Using default strain. Warning: gnlti136478529 has no strain. Using default strain. Warning: gnlti136478530 has no strain. Using default strain. Warning: gnlti136478531 has no strain. Using default strain. Warning: gnlti136478532 has no strain. Using default strain. Warning: gnlti136478535 has no strain. Using default strain. Warning: gnlti136478539 has no strain. Using default strain. Warning: gnlti136478541 has no strain. Using default strain. Warning: gnlti136478542 has no strain. Using default strain. Warning: gnlti136478552 has no strain. Using default strain. Warning: gnlti136478556 has no strain. Using default strain. Warning: gnlti136478565 has no strain. Using default strain. Warning: gnlti136478571 has no strain. Using default strain. Warning: gnlti136478575 has no strain. Using default strain. Warning: gnlti136478576 has no strain. Using default strain. Warning: gnlti136478579 has no strain. Using default strain. Warning: gnlti136478584 has no strain. Using default strain. Warning: gnlti136478589 has no strain. Using default strain. Warning: gnlti136478590 has no strain. Using default strain. Warning: gnlti136478592 has no strain. Using default strain. Warning: gnlti136478600 has no strain. Using default strain. Warning: gnlti136478605 has no strain. Using default strain. Warning: gnlti136478607 has no strain. Using default strain. Warning: gnlti136478608 has no strain. Using default strain. Warning: gnlti136478615 has no strain. Using default strain. Warning: gnlti136478616 has no strain. Using default strain. Warning: gnlti136478624 has no strain. Using default strain. Warning: gnlti136478626 has no strain. Using default strain. Warning: gnlti136478627 has no strain. Using default strain. Warning: gnlti136478630 has no strain. Using default strain. Warning: gnlti136478635 has no strain. Using default strain. Warning: gnlti136478637 has no strain. Using default strain. Warning: gnlti136478638 has no strain. Using default strain. Warning: gnlti136478640 has no strain. Using default strain. Warning: gnlti136478644 has no strain. Using default strain. Warning: gnlti136478647 has no strain. Using default strain. Warning: gnlti136478648 has no strain. Using default strain. Warning: gnlti136478652 has no strain. Using default strain. Warning: gnlti136478661 has no strain. Using default strain. Warning: gnlti136478663 has no strain. Using default strain. Warning: gnlti136478665 has no strain. Using default strain. Warning: gnlti136478667 has no strain. Using default strain. Warning: gnlti136478668 has no strain. Using default strain. Warning: gnlti136478670 has no strain. Using default strain. Warning: gnlti136478678 has no strain. Using default strain. Warning: gnlti136478683 has no strain. Using default strain. Warning: gnlti136478684 has no strain. Using default strain. Warning: gnlti136478686 has no strain. Using default strain. Warning: gnlti136478687 has no strain. Using default strain. Warning: gnlti136478688 has no strain. Using default strain. Warning: gnlti136478693 has no strain. Using default strain. Warning: gnlti136478694 has no strain. Using default strain. Warning: gnlti136478695 has no strain. Using default strain. Warning: gnlti136478697 has no strain. Using default strain. Warning: gnlti136478700 has no strain. Using default strain. Warning: gnlti136478702 has no strain. Using default strain. Warning: gnlti136478705 has no strain. Using default strain. Warning: gnlti136478706 has no strain. Using default strain. Warning: gnlti136478708 has no strain. Using default strain. Warning: gnlti136478710 has no strain. Using default strain. Warning: gnlti136478713 has no strain. Using default strain. Warning: gnlti136478717 has no strain. Using default strain. Warning: gnlti136478720 has no strain. Using default strain. Warning: gnlti136478723 has no strain. Using default strain. Warning: gnlti136478725 has no strain. Using default strain. Warning: gnlti136478726 has no strain. Using default strain. Warning: gnlti136478728 has no strain. Using default strain. Warning: gnlti136478730 has no strain. Using default strain. Warning: gnlti136478736 has no strain. Using default strain. Warning: gnlti136478739 has no strain. Using default strain. Warning: gnlti136478751 has no strain. Using default strain. Warning: gnlti136478752 has no strain. Using default strain. Warning: gnlti136478755 has no strain. Using default strain. Warning: gnlti136478757 has no strain. Using default strain. Warning: gnlti136478759 has no strain. Using default strain. Warning: gnlti136478771 has no strain. Using default strain. Warning: gnlti136478775 has no strain. Using default strain. Warning: gnlti136478785 has no strain. Using default strain. Warning: gnlti136478791 has no strain. Using default strain. Warning: gnlti136478792 has no strain. Using default strain. Warning: gnlti136478794 has no strain. Using default strain. Warning: gnlti136478801 has no strain. Using default strain. Warning: gnlti136478802 has no strain. Using default strain. Warning: gnlti136478805 has no strain. Using default strain. Warning: gnlti136478807 has no strain. Using default strain. Warning: gnlti136478809 has no strain. Using default strain. Warning: gnlti136478813 has no strain. Using default strain. Warning: gnlti136478815 has no strain. Using default strain. Warning: gnlti136478816 has no strain. Using default strain. Warning: gnlti136478819 has no strain. Using default strain. Warning: gnlti136478821 has no strain. Using default strain. Warning: gnlti136478822 has no strain. Using default strain. Warning: gnlti136478827 has no strain. Using default strain. Warning: gnlti136478830 has no strain. Using default strain. Warning: gnlti136478833 has no strain. Using default strain. Warning: gnlti136478836 has no strain. Using default strain. Warning: gnlti136478837 has no strain. Using default strain. Warning: gnlti136478838 has no strain. Using default strain. Warning: gnlti136478840 has no strain. Using default strain. Warning: gnlti136478843 has no strain. Using default strain. Warning: gnlti136478844 has no strain. Using default strain. Warning: gnlti136478846 has no strain. Using default strain. Warning: gnlti136478847 has no strain. Using default strain. Warning: gnlti136478849 has no strain. Using default strain. Warning: gnlti136478851 has no strain. Using default strain. Warning: gnlti136478852 has no strain. Using default strain. Warning: gnlti136478856 has no strain. Using default strain. Warning: gnlti136478860 has no strain. Using default strain. Warning: gnlti136478861 has no strain. Using default strain. Warning: gnlti136478863 has no strain. Using default strain. Warning: gnlti136478864 has no strain. Using default strain. Warning: gnlti136478872 has no strain. Using default strain. Warning: gnlti136478873 has no strain. Using default strain. Warning: gnlti136478874 has no strain. Using default strain. Warning: gnlti136478875 has no strain. Using default strain. Warning: gnlti136478882 has no strain. Using default strain. Warning: gnlti136478884 has no strain. Using default strain. Warning: gnlti136478886 has no strain. Using default strain. Warning: gnlti136478890 has no strain. Using default strain. Warning: gnlti136478892 has no strain. Using default strain. Warning: gnlti136478893 has no strain. Using default strain. Warning: gnlti136478894 has no strain. Using default strain. Warning: gnlti136478899 has no strain. Using default strain. Warning: gnlti136478901 has no strain. Using default strain. Warning: gnlti136478903 has no strain. Using default strain. Warning: gnlti136478904 has no strain. Using default strain. Warning: gnlti136478905 has no strain. Using default strain. Warning: gnlti136478906 has no strain. Using default strain. Warning: gnlti136478907 has no strain. Using default strain. Warning: gnlti136478910 has no strain. Using default strain. Warning: gnlti136478916 has no strain. Using default strain. Warning: gnlti136478919 has no strain. Using default strain. Warning: gnlti136478923 has no strain. Using default strain. Warning: gnlti136478925 has no strain. Using default strain. Warning: gnlti136478926 has no strain. Using default strain. Warning: gnlti136478928 has no strain. Using default strain. Warning: gnlti136478933 has no strain. Using default strain. Warning: gnlti136478934 has no strain. Using default strain. Warning: gnlti136478940 has no strain. Using default strain. Warning: gnlti136478941 has no strain. Using default strain. Warning: gnlti136478944 has no strain. Using default strain. Warning: gnlti136478952 has no strain. Using default strain. Warning: gnlti136478955 has no strain. Using default strain. Warning: gnlti136478956 has no strain. Using default strain. Warning: gnlti136478959 has no strain. Using default strain. Warning: gnlti136478960 has no strain. Using default strain. Warning: gnlti136478967 has no strain. Using default strain. Warning: gnlti136478981 has no strain. Using default strain. Warning: gnlti136478982 has no strain. Using default strain. Warning: gnlti136478984 has no strain. Using default strain. Warning: gnlti136478987 has no strain. Using default strain. Warning: gnlti136478989 has no strain. Using default strain. Warning: gnlti136478990 has no strain. Using default strain. Warning: gnlti136478992 has no strain. Using default strain. Warning: gnlti136479004 has no strain. Using default strain. Warning: gnlti136479006 has no strain. Using default strain. Warning: gnlti136479009 has no strain. Using default strain. Warning: gnlti136479010 has no strain. Using default strain. Warning: gnlti136479013 has no strain. Using default strain. Warning: gnlti136479014 has no strain. Using default strain. Warning: gnlti136479015 has no strain. Using default strain. Warning: gnlti136479016 has no strain. Using default strain. Warning: gnlti136479018 has no strain. Using default strain. Warning: gnlti136479020 has no strain. Using default strain. Warning: gnlti136479022 has no strain. Using default strain. Warning: gnlti136479024 has no strain. Using default strain. Warning: gnlti136479027 has no strain. Using default strain. Warning: gnlti136479028 has no strain. Using default strain. Warning: gnlti136479030 has no strain. Using default strain. Warning: gnlti136479033 has no strain. Using default strain. Warning: gnlti136479034 has no strain. Using default strain. Warning: gnlti136479035 has no strain. Using default strain. Warning: gnlti136479036 has no strain. Using default strain. Warning: gnlti136479039 has no strain. Using default strain. Warning: gnlti136479040 has no strain. Using default strain. Warning: gnlti136479042 has no strain. Using default strain. Warning: gnlti136479043 has no strain. Using default strain. Warning: gnlti136479044 has no strain. Using default strain. Warning: gnlti136479046 has no strain. Using default strain. Warning: gnlti136479051 has no strain. Using default strain. Warning: gnlti136479055 has no strain. Using default strain. Warning: gnlti136479056 has no strain. Using default strain. Warning: gnlti136479058 has no strain. Using default strain. Warning: gnlti136479059 has no strain. Using default strain. Warning: gnlti136479060 has no strain. Using default strain. Warning: gnlti136479063 has no strain. Using default strain. Warning: gnlti136479064 has no strain. Using default strain. Warning: gnlti136479065 has no strain. Using default strain. Warning: gnlti136479066 has no strain. Using default strain. Warning: gnlti136479067 has no strain. Using default strain. Warning: gnlti136479069 has no strain. Using default strain. Warning: gnlti136479070 has no strain. Using default strain. Warning: gnlti136479071 has no strain. Using default strain. Warning: gnlti136479073 has no strain. Using default strain. Warning: gnlti136479074 has no strain. Using default strain. Warning: gnlti136479076 has no strain. Using default strain. Warning: gnlti136479079 has no strain. Using default strain. Warning: gnlti136479081 has no strain. Using default strain. Warning: gnlti136479083 has no strain. Using default strain. Warning: gnlti136479084 has no strain. Using default strain. Warning: gnlti136479085 has no strain. Using default strain. Warning: gnlti136479086 has no strain. Using default strain. Warning: gnlti136479088 has no strain. Using default strain. Warning: gnlti136479092 has no strain. Using default strain. Warning: gnlti136479094 has no strain. Using default strain. Warning: gnlti136479097 has no strain. Using default strain. Warning: gnlti136479101 has no strain. Using default strain. Warning: gnlti136479103 has no strain. Using default strain. Warning: gnlti136479104 has no strain. Using default strain. Warning: gnlti136479105 has no strain. Using default strain. Warning: gnlti136479107 has no strain. Using default strain. Warning: gnlti136479110 has no strain. Using default strain. Warning: gnlti136479123 has no strain. Using default strain. Warning: gnlti136479127 has no strain. Using default strain. Warning: gnlti136479139 has no strain. Using default strain. Warning: gnlti136479140 has no strain. Using default strain. Warning: gnlti136479144 has no strain. Using default strain. Warning: gnlti136479145 has no strain. Using default strain. Warning: gnlti136479147 has no strain. Using default strain. Warning: gnlti136479151 has no strain. Using default strain. Warning: gnlti136479152 has no strain. Using default strain. Warning: gnlti136479157 has no strain. Using default strain. Warning: gnlti136479159 has no strain. Using default strain. Warning: gnlti136479161 has no strain. Using default strain. Warning: gnlti136479162 has no strain. Using default strain. Warning: gnlti136479164 has no strain. Using default strain. Warning: gnlti136479166 has no strain. Using default strain. Warning: gnlti136479169 has no strain. Using default strain. Warning: gnlti136479172 has no strain. Using default strain. Warning: gnlti136479173 has no strain. Using default strain. Warning: gnlti136479174 has no strain. Using default strain. Warning: gnlti136479180 has no strain. Using default strain. Warning: gnlti136479181 has no strain. Using default strain. Warning: gnlti136479184 has no strain. Using default strain. Warning: gnlti136479188 has no strain. Using default strain. Warning: gnlti136479198 has no strain. Using default strain. Warning: gnlti136479202 has no strain. Using default strain. Warning: gnlti136479203 has no strain. Using default strain. Warning: gnlti136479206 has no strain. Using default strain. Warning: gnlti136479208 has no strain. Using default strain. Warning: gnlti136479209 has no strain. Using default strain. Warning: gnlti136479210 has no strain. Using default strain. Warning: gnlti136479215 has no strain. Using default strain. Warning: gnlti136479216 has no strain. Using default strain. Warning: gnlti136479217 has no strain. Using default strain. Warning: gnlti136479221 has no strain. Using default strain. Warning: gnlti136479222 has no strain. Using default strain. Warning: gnlti136479223 has no strain. Using default strain. Warning: gnlti136479225 has no strain. Using default strain. Warning: gnlti136479226 has no strain. Using default strain. Warning: gnlti136479229 has no strain. Using default strain. Warning: gnlti136479233 has no strain. Using default strain. Warning: gnlti136479237 has no strain. Using default strain. Warning: gnlti136479240 has no strain. Using default strain. Warning: gnlti136479242 has no strain. Using default strain. Warning: gnlti136479243 has no strain. Using default strain. Warning: gnlti136479247 has no strain. Using default strain. Warning: gnlti136479252 has no strain. Using default strain. Warning: gnlti136479256 has no strain. Using default strain. Warning: gnlti136479257 has no strain. Using default strain. Warning: gnlti136479258 has no strain. Using default strain. Warning: gnlti136479259 has no strain. Using default strain. Warning: gnlti136479262 has no strain. Using default strain. Warning: gnlti136479264 has no strain. Using default strain. Warning: gnlti136479266 has no strain. Using default strain. Warning: gnlti136479267 has no strain. Using default strain. Warning: gnlti136479268 has no strain. Using default strain. Warning: gnlti136479273 has no strain. Using default strain. Warning: gnlti136479274 has no strain. Using default strain. Warning: gnlti136479278 has no strain. Using default strain. Warning: gnlti136479280 has no strain. Using default strain. Warning: gnlti136479285 has no strain. Using default strain. Warning: gnlti136479286 has no strain. Using default strain. Warning: gnlti136479287 has no strain. Using default strain. Warning: gnlti136479291 has no strain. Using default strain. Warning: gnlti136479293 has no strain. Using default strain. Warning: gnlti136479295 has no strain. Using default strain. Warning: gnlti136479296 has no strain. Using default strain. Warning: gnlti136479297 has no strain. Using default strain. Warning: gnlti136479298 has no strain. Using default strain. Warning: gnlti136479302 has no strain. Using default strain. Warning: gnlti136479304 has no strain. Using default strain. Warning: gnlti136479307 has no strain. Using default strain. Warning: gnlti136479309 has no strain. Using default strain. Warning: gnlti136479318 has no strain. Using default strain. Warning: gnlti136479322 has no strain. Using default strain. Warning: gnlti136479332 has no strain. Using default strain. Warning: gnlti136479336 has no strain. Using default strain. Warning: gnlti136479342 has no strain. Using default strain. Warning: gnlti136479343 has no strain. Using default strain. Warning: gnlti136479344 has no strain. Using default strain. Warning: gnlti136479345 has no strain. Using default strain. Warning: gnlti136479346 has no strain. Using default strain. Warning: gnlti136479348 has no strain. Using default strain. Warning: gnlti136479353 has no strain. Using default strain. Warning: gnlti136479354 has no strain. Using default strain. Warning: gnlti136479356 has no strain. Using default strain. Warning: gnlti136479357 has no strain. Using default strain. Warning: gnlti136479363 has no strain. Using default strain. Warning: gnlti136479365 has no strain. Using default strain. Warning: gnlti136479369 has no strain. Using default strain. Warning: gnlti136479372 has no strain. Using default strain. Warning: gnlti136479376 has no strain. Using default strain. Warning: gnlti136479379 has no strain. Using default strain. Warning: gnlti136479386 has no strain. Using default strain. Warning: gnlti136479387 has no strain. Using default strain. Warning: gnlti136479388 has no strain. Using default strain. Warning: gnlti136479389 has no strain. Using default strain. Warning: gnlti136479391 has no strain. Using default strain. Warning: gnlti136479394 has no strain. Using default strain. Warning: gnlti136479400 has no strain. Using default strain. Warning: gnlti136479402 has no strain. Using default strain. Warning: gnlti136479406 has no strain. Using default strain. Warning: gnlti136479407 has no strain. Using default strain. Warning: gnlti136479409 has no strain. Using default strain. Warning: gnlti136479410 has no strain. Using default strain. Warning: gnlti136479411 has no strain. Using default strain. Warning: gnlti136479413 has no strain. Using default strain. Warning: gnlti136479414 has no strain. Using default strain. Warning: gnlti136479420 has no strain. Using default strain. Warning: gnlti136479421 has no strain. Using default strain. Warning: gnlti136479425 has no strain. Using default strain. Warning: gnlti136479427 has no strain. Using default strain. Warning: gnlti136479428 has no strain. Using default strain. Warning: gnlti136479429 has no strain. Using default strain. Warning: gnlti136479435 has no strain. Using default strain. Warning: gnlti136479436 has no strain. Using default strain. Warning: gnlti136479437 has no strain. Using default strain. Warning: gnlti136479441 has no strain. Using default strain. Warning: gnlti136479444 has no strain. Using default strain. Warning: gnlti136479447 has no strain. Using default strain. Warning: gnlti136479455 has no strain. Using default strain. Warning: gnlti136479459 has no strain. Using default strain. Warning: gnlti136479460 has no strain. Using default strain. Warning: gnlti136479463 has no strain. Using default strain. Warning: gnlti136479466 has no strain. Using default strain. Warning: gnlti136479467 has no strain. Using default strain. Warning: gnlti136479470 has no strain. Using default strain. Warning: gnlti136479471 has no strain. Using default strain. Warning: gnlti136479476 has no strain. Using default strain. Warning: gnlti136479478 has no strain. Using default strain. Warning: gnlti136479479 has no strain. Using default strain. Warning: gnlti136479480 has no strain. Using default strain. Warning: gnlti136479489 has no strain. Using default strain. Warning: gnlti136479490 has no strain. Using default strain. Warning: gnlti136479492 has no strain. Using default strain. Warning: gnlti136479495 has no strain. Using default strain. Warning: gnlti136479499 has no strain. Using default strain. Warning: gnlti136479500 has no strain. Using default strain. Warning: gnlti136479501 has no strain. Using default strain. Warning: gnlti136479506 has no strain. Using default strain. Warning: gnlti136479507 has no strain. Using default strain. Warning: gnlti136479509 has no strain. Using default strain. Warning: gnlti136479510 has no strain. Using default strain. Warning: gnlti136479511 has no strain. Using default strain. Warning: gnlti136479514 has no strain. Using default strain. Warning: gnlti136479515 has no strain. Using default strain. Warning: gnlti136479518 has no strain. Using default strain. Warning: gnlti136479520 has no strain. Using default strain. Warning: gnlti136479522 has no strain. Using default strain. Warning: gnlti136479523 has no strain. Using default strain. Warning: gnlti136479525 has no strain. Using default strain. Warning: gnlti136479526 has no strain. Using default strain. Warning: gnlti136479530 has no strain. Using default strain. Warning: gnlti136479532 has no strain. Using default strain. Warning: gnlti136479535 has no strain. Using default strain. Warning: gnlti136479536 has no strain. Using default strain. Warning: gnlti136479537 has no strain. Using default strain. Warning: gnlti136479539 has no strain. Using default strain. Warning: gnlti136479540 has no strain. Using default strain. Warning: gnlti136479542 has no strain. Using default strain. Warning: gnlti136479545 has no strain. Using default strain. Warning: gnlti136479547 has no strain. Using default strain. Warning: gnlti136479548 has no strain. Using default strain. Warning: gnlti136479551 has no strain. Using default strain. Warning: gnlti136479552 has no strain. Using default strain. Warning: gnlti136479553 has no strain. Using default strain. Warning: gnlti136479565 has no strain. Using default strain. Warning: gnlti136479566 has no strain. Using default strain. Warning: gnlti136479568 has no strain. Using default strain. Warning: gnlti136479573 has no strain. Using default strain. Warning: gnlti136479574 has no strain. Using default strain. Warning: gnlti136479576 has no strain. Using default strain. Warning: gnlti136479587 has no strain. Using default strain. Warning: gnlti136479588 has no strain. Using default strain. Warning: gnlti136479591 has no strain. Using default strain. Warning: gnlti136479593 has no strain. Using default strain. Warning: gnlti136479594 has no strain. Using default strain. Warning: gnlti136479595 has no strain. Using default strain. Warning: gnlti136479601 has no strain. Using default strain. Warning: gnlti136479609 has no strain. Using default strain. Warning: gnlti136479614 has no strain. Using default strain. Warning: gnlti136479621 has no strain. Using default strain. Warning: gnlti136479626 has no strain. Using default strain. Warning: gnlti136479627 has no strain. Using default strain. Warning: gnlti136479629 has no strain. Using default strain. Warning: gnlti136479630 has no strain. Using default strain. Warning: gnlti136479631 has no strain. Using default strain. Warning: gnlti136479633 has no strain. Using default strain. Warning: gnlti136479636 has no strain. Using default strain. Warning: gnlti136479637 has no strain. Using default strain. Warning: gnlti136479642 has no strain. Using default strain. Warning: gnlti136479643 has no strain. Using default strain. Warning: gnlti136479644 has no strain. Using default strain. Warning: gnlti136479645 has no strain. Using default strain. Warning: gnlti136479646 has no strain. Using default strain. Warning: gnlti136479648 has no strain. Using default strain. Warning: gnlti136479651 has no strain. Using default strain. Warning: gnlti136479658 has no strain. Using default strain. Warning: gnlti136479659 has no strain. Using default strain. Warning: gnlti136479666 has no strain. Using default strain. Warning: gnlti136479669 has no strain. Using default strain. Warning: gnlti136479671 has no strain. Using default strain. Warning: gnlti136479677 has no strain. Using default strain. Warning: gnlti136479679 has no strain. Using default strain. Warning: gnlti136479680 has no strain. Using default strain. Warning: gnlti136479692 has no strain. Using default strain. Warning: gnlti136479693 has no strain. Using default strain. Warning: gnlti136479695 has no strain. Using default strain. Warning: gnlti136479698 has no strain. Using default strain. Warning: gnlti136479699 has no strain. Using default strain. Warning: gnlti136479701 has no strain. Using default strain. Warning: gnlti136479702 has no strain. Using default strain. Warning: gnlti136479705 has no strain. Using default strain. Warning: gnlti136479708 has no strain. Using default strain. Warning: gnlti136479716 has no strain. Using default strain. Warning: gnlti136479721 has no strain. Using default strain. Warning: gnlti136479723 has no strain. Using default strain. Warning: gnlti136479724 has no strain. Using default strain. Warning: gnlti136479725 has no strain. Using default strain. Warning: gnlti136479726 has no strain. Using default strain. Warning: gnlti136479729 has no strain. Using default strain. Warning: gnlti136479730 has no strain. Using default strain. Warning: gnlti136479731 has no strain. Using default strain. Warning: gnlti136479733 has no strain. Using default strain. Warning: gnlti136479734 has no strain. Using default strain. Warning: gnlti136479742 has no strain. Using default strain. Warning: gnlti136479748 has no strain. Using default strain. Warning: gnlti136479751 has no strain. Using default strain. Warning: gnlti136479757 has no strain. Using default strain. Warning: gnlti136479760 has no strain. Using default strain. Warning: gnlti136479764 has no strain. Using default strain. Warning: gnlti136479766 has no strain. Using default strain. Warning: gnlti136479769 has no strain. Using default strain. Warning: gnlti136479771 has no strain. Using default strain. Warning: gnlti136479772 has no strain. Using default strain. Warning: gnlti136479775 has no strain. Using default strain. Warning: gnlti136479777 has no strain. Using default strain. Warning: gnlti136479778 has no strain. Using default strain. Warning: gnlti136479779 has no strain. Using default strain. Warning: gnlti136479781 has no strain. Using default strain. Warning: gnlti136479783 has no strain. Using default strain. Warning: gnlti136479784 has no strain. Using default strain. Warning: gnlti136479788 has no strain. Using default strain. Warning: gnlti136479791 has no strain. Using default strain. Warning: gnlti136479792 has no strain. Using default strain. Warning: gnlti136479793 has no strain. Using default strain. Warning: gnlti136479796 has no strain. Using default strain. Warning: gnlti136479797 has no strain. Using default strain. Warning: gnlti136479798 has no strain. Using default strain. Warning: gnlti136479801 has no strain. Using default strain. Warning: gnlti136479810 has no strain. Using default strain. Warning: gnlti136479811 has no strain. Using default strain. Warning: gnlti136479815 has no strain. Using default strain. Warning: gnlti136479818 has no strain. Using default strain. Warning: gnlti136479819 has no strain. Using default strain. Warning: gnlti136479820 has no strain. Using default strain. Warning: gnlti136479821 has no strain. Using default strain. Warning: gnlti136479823 has no strain. Using default strain. Warning: gnlti136479827 has no strain. Using default strain. Warning: gnlti136479828 has no strain. Using default strain. Warning: gnlti136479829 has no strain. Using default strain. Warning: gnlti136479831 has no strain. Using default strain. Warning: gnlti136479833 has no strain. Using default strain. Warning: gnlti136479837 has no strain. Using default strain. Warning: gnlti136479838 has no strain. Using default strain. Warning: gnlti136479842 has no strain. Using default strain. Warning: gnlti136479845 has no strain. Using default strain. Warning: gnlti136479846 has no strain. Using default strain. Warning: gnlti136479848 has no strain. Using default strain. Warning: gnlti136479849 has no strain. Using default strain. Warning: gnlti136479850 has no strain. Using default strain. Warning: gnlti136479851 has no strain. Using default strain. Warning: gnlti136479853 has no strain. Using default strain. Warning: gnlti136479854 has no strain. Using default strain. Warning: gnlti136479860 has no strain. Using default strain. Warning: gnlti136479862 has no strain. Using default strain. Warning: gnlti136479865 has no strain. Using default strain. Warning: gnlti136479873 has no strain. Using default strain. Warning: gnlti136479880 has no strain. Using default strain. Warning: gnlti136479882 has no strain. Using default strain. Warning: gnlti136479884 has no strain. Using default strain. Starting minimum left vector clip ... done. Pool has 801 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 801 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 0 reads have not enough good bases for assembly. - 801 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 397 Localtime: Thu Jul 15 12:00:00 2010 Generated 801 unique template ids for 801 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 801 reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 1602 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 800 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 1336 possible: 108907 permbans: 0 Hits chosen: 1239 Localtime: Thu Jul 15 12:00:00 2010 Pre-assembly alignment search for read extension and / or vector clipping: Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Pre-assembly vector clipping Performing vector clipping ... done. Pool has 801 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 801 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 0 reads have not enough good bases for assembly. - 801 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 397 Localtime: Thu Jul 15 12:00:00 2010 Generated 801 unique template ids for 801 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 801 reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 1602 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 800 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 1268 possible: 108907 permbans: 83 Hits chosen: 1171 Localtime: Thu Jul 15 12:00:00 2010 Pass: 1 Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 801 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1 Contig length: 611 Avg. contig coverage: 3.53 Consensus contains: A: 145 C: 129 G: 156 T: 158 N: 0 IUPAC: 21 Funny: 0 *: 2 Num reads: 5 Avg. read length: 432 Reads contain 2153 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 2 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 796 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 2 Contig length: 382 Avg. contig coverage: 3.77 Consensus contains: A: 125 C: 75 G: 114 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 4 Avg. read length: 360 Reads contain 1442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 3 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 792 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 3 Contig length: 563 Avg. contig coverage: 2.94 Consensus contains: A: 168 C: 112 G: 146 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 553 Reads contain 1653 bases, 5 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 4 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 789 +[1] +a++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 4 Contig length: 700 Avg. contig coverage: 2.43 Consensus contains: A: 160 C: 159 G: 204 T: 173 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 4 Avg. read length: 425 Reads contain 1699 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 5 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 785 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 5 Contig length: 638 Avg. contig coverage: 2.57 Consensus contains: A: 169 C: 179 G: 122 T: 163 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 4 Avg. read length: 410 Reads contain 1641 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 6 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 781 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 6 Contig length: 589 Avg. contig coverage: 2.68 Consensus contains: A: 128 C: 189 G: 110 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 526 Reads contain 1579 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 7 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 778 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 7 Contig length: 422 Avg. contig coverage: 3.53 Consensus contains: A: 113 C: 73 G: 91 T: 129 N: 0 IUPAC: 15 Funny: 0 *: 1 Num reads: 4 Avg. read length: 372 Reads contain 1485 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 8 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 774 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 8 Contig length: 504 Avg. contig coverage: 2.92 Consensus contains: A: 132 C: 128 G: 116 T: 119 N: 0 IUPAC: 7 Funny: 0 *: 2 Num reads: 3 Avg. read length: 490 Reads contain 1466 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 9 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 771 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 9 Contig length: 602 Avg. contig coverage: 2.57 Consensus contains: A: 155 C: 151 G: 135 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 517 Reads contain 1551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 10 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 768 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 10 Contig length: 625 Avg. contig coverage: 2.49 Consensus contains: A: 155 C: 122 G: 175 T: 171 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 520 Reads contain 1554 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 11 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 765 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 11 Contig length: 462 Avg. contig coverage: 2.78 Consensus contains: A: 106 C: 89 G: 113 T: 153 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 429 Reads contain 1285 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 12 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 762 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 12 Contig length: 467 Avg. contig coverage: 2.81 Consensus contains: A: 118 C: 151 G: 78 T: 114 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 3 Avg. read length: 438 Reads contain 1315 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 13 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 759 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 13 Contig length: 680 Avg. contig coverage: 2.53 Consensus contains: A: 174 C: 134 G: 187 T: 181 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 574 Reads contain 1718 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 14 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 756 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 14 Contig length: 440 Avg. contig coverage: 2.87 Consensus contains: A: 124 C: 105 G: 102 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 422 Reads contain 1265 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 15 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 753 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 15 Contig length: 695 Avg. contig coverage: 2.1 Consensus contains: A: 198 C: 173 G: 138 T: 185 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 488 Reads contain 1464 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 16 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 750 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 16 Contig length: 542 Avg. contig coverage: 2.52 Consensus contains: A: 143 C: 133 G: 137 T: 125 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 456 Reads contain 1360 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 17 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 747 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 17 Contig length: 546 Avg. contig coverage: 1.96 Consensus contains: A: 155 C: 134 G: 133 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 535 Reads contain 1071 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 18 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 745 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 18 Contig length: 580 Avg. contig coverage: 2.61 Consensus contains: A: 134 C: 144 G: 158 T: 117 N: 0 IUPAC: 25 Funny: 0 *: 2 Num reads: 3 Avg. read length: 506 Reads contain 1512 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 19 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 742 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 19 Contig length: 490 Avg. contig coverage: 2.6 Consensus contains: A: 131 C: 93 G: 126 T: 136 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 424 Reads contain 1270 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 20 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 739 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 20 Contig length: 519 Avg. contig coverage: 2.75 Consensus contains: A: 143 C: 129 G: 78 T: 150 N: 0 IUPAC: 18 Funny: 0 *: 1 Num reads: 3 Avg. read length: 476 Reads contain 1428 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 21 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 736 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 21 Contig length: 538 Avg. contig coverage: 2.48 Consensus contains: A: 133 C: 147 G: 100 T: 153 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 3 Avg. read length: 446 Reads contain 1337 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 22 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 733 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 22 Contig length: 540 Avg. contig coverage: 2.73 Consensus contains: A: 152 C: 128 G: 91 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 3 Avg. read length: 492 Reads contain 1472 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 23 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 730 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 23 Contig length: 377 Avg. contig coverage: 2.93 Consensus contains: A: 86 C: 104 G: 85 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 3 Avg. read length: 368 Reads contain 1101 bases, 3 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 24 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 727 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 24 Contig length: 464 Avg. contig coverage: 3.61 Consensus contains: A: 125 C: 121 G: 92 T: 109 N: 0 IUPAC: 9 Funny: 0 *: 8 Num reads: 4 Avg. read length: 419 Reads contain 1653 bases, 0 Ns and 24 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 25 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 723 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 25 Contig length: 589 Avg. contig coverage: 2.17 Consensus contains: A: 185 C: 139 G: 113 T: 151 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 427 Reads contain 1281 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 26 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 720 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 26 Contig length: 511 Avg. contig coverage: 2.68 Consensus contains: A: 138 C: 148 G: 102 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 457 Reads contain 1373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 27 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 717 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 27 Contig length: 548 Avg. contig coverage: 2.2 Consensus contains: A: 109 C: 114 G: 116 T: 209 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 402 Reads contain 1207 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 28 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 714 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 28 Contig length: 530 Avg. contig coverage: 2.41 Consensus contains: A: 160 C: 119 G: 125 T: 117 N: 0 IUPAC: 5 Funny: 0 *: 4 Num reads: 3 Avg. read length: 426 Reads contain 1273 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 29 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 711 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 29 Contig length: 523 Avg. contig coverage: 2.43 Consensus contains: A: 136 C: 126 G: 126 T: 127 N: 0 IUPAC: 6 Funny: 0 *: 2 Num reads: 3 Avg. read length: 424 Reads contain 1267 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 30 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 708 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 30 Contig length: 382 Avg. contig coverage: 2.72 Consensus contains: A: 84 C: 96 G: 86 T: 115 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 346 Reads contain 1040 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 31 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 705 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 31 Contig length: 576 Avg. contig coverage: 2.3 Consensus contains: A: 178 C: 145 G: 103 T: 136 N: 0 IUPAC: 12 Funny: 0 *: 2 Num reads: 3 Avg. read length: 442 Reads contain 1323 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 32 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 702 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 32 Contig length: 415 Avg. contig coverage: 2.86 Consensus contains: A: 95 C: 127 G: 87 T: 104 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 396 Reads contain 1183 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 33 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 699 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 33 Contig length: 577 Avg. contig coverage: 2.22 Consensus contains: A: 194 C: 113 G: 109 T: 154 N: 2 IUPAC: 0 Funny: 0 *: 5 Num reads: 3 Avg. read length: 427 Reads contain 1271 bases, 2 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 34 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 696 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 34 Contig length: 621 Avg. contig coverage: 2.08 Consensus contains: A: 164 C: 163 G: 128 T: 158 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 3 Avg. read length: 431 Reads contain 1295 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 35 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 693 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 35 Contig length: 414 Avg. contig coverage: 2.88 Consensus contains: A: 80 C: 117 G: 103 T: 101 N: 0 IUPAC: 9 Funny: 0 *: 4 Num reads: 3 Avg. read length: 398 Reads contain 1187 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 36 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 690 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 36 Contig length: 694 Avg. contig coverage: 1.98 Consensus contains: A: 225 C: 180 G: 119 T: 168 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 459 Reads contain 1376 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 37 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 687 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 37 Contig length: 451 Avg. contig coverage: 2.42 Consensus contains: A: 100 C: 132 G: 115 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 365 Reads contain 1093 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 38 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 684 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 38 Contig length: 608 Avg. contig coverage: 1.96 Consensus contains: A: 184 C: 118 G: 156 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 597 Reads contain 1195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 39 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 682 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 39 Contig length: 482 Avg. contig coverage: 2.37 Consensus contains: A: 99 C: 131 G: 103 T: 148 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 381 Reads contain 1143 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 40 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 679 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 40 Contig length: 412 Avg. contig coverage: 3.59 Consensus contains: A: 114 C: 86 G: 89 T: 107 N: 0 IUPAC: 12 Funny: 0 *: 4 Num reads: 4 Avg. read length: 370 Reads contain 1473 bases, 0 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 41 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 675 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 41 Contig length: 929 Avg. contig coverage: 1.67 Consensus contains: A: 277 C: 179 G: 187 T: 283 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 3 Avg. read length: 520 Reads contain 1554 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 42 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 672 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 42 Contig length: 569 Avg. contig coverage: 2.44 Consensus contains: A: 130 C: 142 G: 144 T: 124 N: 0 IUPAC: 29 Funny: 0 *: 0 Num reads: 3 Avg. read length: 464 Reads contain 1391 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 43 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 669 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 43 Contig length: 585 Avg. contig coverage: 2.21 Consensus contains: A: 180 C: 139 G: 109 T: 143 N: 0 IUPAC: 13 Funny: 0 *: 1 Num reads: 3 Avg. read length: 432 Reads contain 1295 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 44 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 666 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 44 Contig length: 938 Avg. contig coverage: 1.65 Consensus contains: A: 253 C: 280 G: 185 T: 218 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 3 Avg. read length: 517 Reads contain 1549 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 45 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 663 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 45 Contig length: 509 Avg. contig coverage: 1.65 Consensus contains: A: 122 C: 115 G: 161 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 420 Reads contain 840 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 46 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 661 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 46 Contig length: 602 Avg. contig coverage: 2.2 Consensus contains: A: 156 C: 131 G: 133 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 5 Num reads: 3 Avg. read length: 442 Reads contain 1319 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 47 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 658 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 47 Contig length: 637 Avg. contig coverage: 1.91 Consensus contains: A: 107 C: 187 G: 104 T: 239 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 610 Reads contain 1218 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 48 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 656 +[1] ++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 48 Contig length: 523 Avg. contig coverage: 3.47 Consensus contains: A: 140 C: 112 G: 127 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 3 Num reads: 5 Avg. read length: 363 Reads contain 1808 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 49 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 651 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 49 Contig length: 425 Avg. contig coverage: 2.35 Consensus contains: A: 91 C: 93 G: 151 T: 89 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 333 Reads contain 1001 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 50 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 648 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 50 Contig length: 378 Avg. contig coverage: 2.47 Consensus contains: A: 138 C: 100 G: 54 T: 84 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 3 Avg. read length: 311 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 51 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 645 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 51 Contig length: 448 Avg. contig coverage: 2.26 Consensus contains: A: 100 C: 106 G: 137 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 3 Avg. read length: 338 Reads contain 1014 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 52 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 642 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 52 Contig length: 485 Avg. contig coverage: 2.24 Consensus contains: A: 146 C: 100 G: 109 T: 124 N: 0 IUPAC: 4 Funny: 0 *: 2 Num reads: 3 Avg. read length: 362 Reads contain 1083 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 53 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 639 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 53 Contig length: 1030 Avg. contig coverage: 1.54 Consensus contains: A: 246 C: 212 G: 296 T: 275 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 531 Reads contain 1594 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 54 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 636 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 54 Contig length: 527 Avg. contig coverage: 1.97 Consensus contains: A: 164 C: 125 G: 100 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 520 Reads contain 1040 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 55 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 634 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 55 Contig length: 667 Avg. contig coverage: 2.07 Consensus contains: A: 182 C: 166 G: 137 T: 178 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 3 Avg. read length: 460 Reads contain 1373 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 56 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 631 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 56 Contig length: 537 Avg. contig coverage: 1.96 Consensus contains: A: 159 C: 141 G: 119 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 528 Reads contain 1057 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 57 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 629 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 57 Contig length: 502 Avg. contig coverage: 2 Consensus contains: A: 165 C: 112 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 502 Reads contain 1004 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 58 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 627 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 58 Contig length: 369 Avg. contig coverage: 2.61 Consensus contains: A: 95 C: 89 G: 69 T: 110 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 3 Avg. read length: 322 Reads contain 962 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 59 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 624 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 59 Contig length: 333 Avg. contig coverage: 2.61 Consensus contains: A: 88 C: 71 G: 75 T: 95 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 3 Avg. read length: 290 Reads contain 868 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 60 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 621 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 60 Contig length: 770 Avg. contig coverage: 2.31 Consensus contains: A: 175 C: 196 G: 184 T: 205 N: 0 IUPAC: 7 Funny: 0 *: 3 Num reads: 4 Avg. read length: 446 Reads contain 1775 bases, 4 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 61 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 617 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 61 Contig length: 495 Avg. contig coverage: 2.42 Consensus contains: A: 123 C: 136 G: 93 T: 134 N: 0 IUPAC: 7 Funny: 0 *: 2 Num reads: 3 Avg. read length: 400 Reads contain 1192 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 62 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 614 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 62 Contig length: 769 Avg. contig coverage: 2.26 Consensus contains: A: 227 C: 170 G: 146 T: 210 N: 0 IUPAC: 8 Funny: 0 *: 8 Num reads: 4 Avg. read length: 436 Reads contain 1734 bases, 0 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 63 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 610 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 63 Contig length: 564 Avg. contig coverage: 1.93 Consensus contains: A: 154 C: 112 G: 126 T: 169 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 544 Reads contain 1088 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 64 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 608 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 64 Contig length: 530 Avg. contig coverage: 1.93 Consensus contains: A: 132 C: 126 G: 141 T: 130 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 3 Avg. read length: 341 Reads contain 1024 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 65 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 605 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 65 Contig length: 491 Avg. contig coverage: 1.98 Consensus contains: A: 143 C: 84 G: 106 T: 154 N: 1 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 488 Reads contain 972 bases, 4 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 66 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 603 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 66 Contig length: 472 Avg. contig coverage: 1.99 Consensus contains: A: 114 C: 144 G: 84 T: 129 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 470 Reads contain 940 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 67 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 601 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 67 Contig length: 562 Avg. contig coverage: 1.9 Consensus contains: A: 119 C: 138 G: 142 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 536 Reads contain 1069 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 68 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 599 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 68 Contig length: 560 Avg. contig coverage: 1.74 Consensus contains: A: 141 C: 111 G: 148 T: 155 N: 0 IUPAC: 1 Funny: 0 *: 4 Num reads: 2 Avg. read length: 487 Reads contain 970 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 69 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 597 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 69 Contig length: 867 Avg. contig coverage: 1.67 Consensus contains: A: 235 C: 162 G: 193 T: 274 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 3 Avg. read length: 482 Reads contain 1445 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 70 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 594 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 70 Contig length: 552 Avg. contig coverage: 1.82 Consensus contains: A: 167 C: 109 G: 142 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 71 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 592 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 71 Contig length: 523 Avg. contig coverage: 1.86 Consensus contains: A: 141 C: 138 G: 115 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 486 Reads contain 972 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 72 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 590 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 72 Contig length: 382 Avg. contig coverage: 2.87 Consensus contains: A: 88 C: 90 G: 90 T: 94 N: 0 IUPAC: 19 Funny: 0 *: 1 Num reads: 3 Avg. read length: 366 Reads contain 1094 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 73 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 587 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 73 Contig length: 389 Avg. contig coverage: 2.53 Consensus contains: A: 120 C: 84 G: 93 T: 69 N: 0 IUPAC: 22 Funny: 0 *: 1 Num reads: 3 Avg. read length: 328 Reads contain 980 bases, 3 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 74 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 584 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 74 Contig length: 469 Avg. contig coverage: 1.94 Consensus contains: A: 164 C: 124 G: 75 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 456 Reads contain 913 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 75 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 582 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 75 Contig length: 539 Avg. contig coverage: 1.84 Consensus contains: A: 146 C: 92 G: 133 T: 167 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 496 Reads contain 993 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 76 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 580 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 76 Contig length: 490 Avg. contig coverage: 2 Consensus contains: A: 116 C: 125 G: 90 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 490 Reads contain 979 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 77 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 578 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 77 Contig length: 377 Avg. contig coverage: 2.15 Consensus contains: A: 62 C: 85 G: 116 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 270 Reads contain 811 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 78 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 575 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 78 Contig length: 504 Avg. contig coverage: 1.85 Consensus contains: A: 128 C: 126 G: 91 T: 158 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 467 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 79 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 573 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 79 Contig length: 494 Avg. contig coverage: 1.95 Consensus contains: A: 109 C: 118 G: 127 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 483 Reads contain 965 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 80 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 571 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 80 Contig length: 465 Avg. contig coverage: 1.92 Consensus contains: A: 134 C: 90 G: 118 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 447 Reads contain 895 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 81 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 569 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 81 Contig length: 372 Avg. contig coverage: 2.36 Consensus contains: A: 67 C: 84 G: 122 T: 96 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 3 Avg. read length: 293 Reads contain 877 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 82 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 566 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 82 Contig length: 508 Avg. contig coverage: 1.84 Consensus contains: A: 159 C: 97 G: 128 T: 123 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 467 Reads contain 935 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 83 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 564 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 83 Contig length: 592 Avg. contig coverage: 1.85 Consensus contains: A: 142 C: 121 G: 180 T: 145 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 550 Reads contain 1100 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 84 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 562 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 84 Contig length: 505 Avg. contig coverage: 1.88 Consensus contains: A: 139 C: 103 G: 128 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 475 Reads contain 950 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 85 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 560 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 85 Contig length: 548 Avg. contig coverage: 1.83 Consensus contains: A: 149 C: 119 G: 138 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 86 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 558 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 86 Contig length: 492 Avg. contig coverage: 1.94 Consensus contains: A: 132 C: 121 G: 95 T: 140 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 479 Reads contain 957 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 87 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 556 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 87 Contig length: 541 Avg. contig coverage: 1.8 Consensus contains: A: 153 C: 126 G: 111 T: 150 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 489 Reads contain 977 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 88 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 554 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 88 Contig length: 468 Avg. contig coverage: 1.87 Consensus contains: A: 146 C: 92 G: 82 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 438 Reads contain 876 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 89 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 552 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 89 Contig length: 611 Avg. contig coverage: 1.68 Consensus contains: A: 132 C: 203 G: 81 T: 195 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 513 Reads contain 1027 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 90 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 550 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 90 Contig length: 457 Avg. contig coverage: 1.93 Consensus contains: A: 113 C: 122 G: 105 T: 115 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 441 Reads contain 883 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 91 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 548 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 91 Contig length: 401 Avg. contig coverage: 2 Consensus contains: A: 77 C: 125 G: 102 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 401 Reads contain 802 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 92 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 546 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 92 Contig length: 438 Avg. contig coverage: 1.94 Consensus contains: A: 97 C: 114 G: 124 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 425 Reads contain 851 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 93 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 544 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 93 Contig length: 437 Avg. contig coverage: 1.96 Consensus contains: A: 167 C: 94 G: 75 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 857 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 94 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 542 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 94 Contig length: 589 Avg. contig coverage: 1.91 Consensus contains: A: 143 C: 131 G: 168 T: 132 N: 0 IUPAC: 13 Funny: 0 *: 2 Num reads: 3 Avg. read length: 375 Reads contain 1115 bases, 7 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 95 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 539 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 95 Contig length: 482 Avg. contig coverage: 1.81 Consensus contains: A: 128 C: 129 G: 106 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 438 Reads contain 876 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 96 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 537 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 96 Contig length: 428 Avg. contig coverage: 1.91 Consensus contains: A: 124 C: 115 G: 88 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 410 Reads contain 820 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 97 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 535 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 97 Contig length: 519 Avg. contig coverage: 2.23 Consensus contains: A: 158 C: 82 G: 122 T: 137 N: 0 IUPAC: 17 Funny: 0 *: 3 Num reads: 3 Avg. read length: 386 Reads contain 1150 bases, 1 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 98 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 532 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 98 Contig length: 513 Avg. contig coverage: 1.76 Consensus contains: A: 119 C: 129 G: 132 T: 132 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 453 Reads contain 906 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 99 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 530 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 99 Contig length: 489 Avg. contig coverage: 1.78 Consensus contains: A: 135 C: 128 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 436 Reads contain 872 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 528 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 100 Contig length: 509 Avg. contig coverage: 1.93 Consensus contains: A: 125 C: 99 G: 140 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 493 Reads contain 983 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 526 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 101 Contig length: 550 Avg. contig coverage: 1.73 Consensus contains: A: 138 C: 176 G: 114 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 477 Reads contain 955 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 524 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 102 Contig length: 540 Avg. contig coverage: 1.72 Consensus contains: A: 124 C: 150 G: 108 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 466 Reads contain 932 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 522 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 103 Contig length: 502 Avg. contig coverage: 1.82 Consensus contains: A: 123 C: 105 G: 130 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 458 Reads contain 916 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 520 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 104 Contig length: 545 Avg. contig coverage: 1.81 Consensus contains: A: 150 C: 108 G: 132 T: 144 N: 1 IUPAC: 10 Funny: 0 *: 0 Num reads: 2 Avg. read length: 493 Reads contain 984 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 518 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 105 Contig length: 423 Avg. contig coverage: 1.88 Consensus contains: A: 94 C: 97 G: 117 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 399 Reads contain 798 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 516 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 106 Contig length: 429 Avg. contig coverage: 1.89 Consensus contains: A: 139 C: 93 G: 104 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 407 Reads contain 815 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 514 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 107 Contig length: 397 Avg. contig coverage: 2 Consensus contains: A: 142 C: 92 G: 64 T: 98 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 397 Reads contain 794 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 512 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 108 Contig length: 587 Avg. contig coverage: 1.8 Consensus contains: A: 152 C: 135 G: 113 T: 178 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 531 Reads contain 1062 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 510 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 109 Contig length: 379 Avg. contig coverage: 1.99 Consensus contains: A: 64 C: 120 G: 99 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 377 Reads contain 754 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 508 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 110 Contig length: 421 Avg. contig coverage: 1.88 Consensus contains: A: 114 C: 119 G: 67 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 397 Reads contain 793 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 506 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 111 Contig length: 435 Avg. contig coverage: 1.88 Consensus contains: A: 125 C: 93 G: 98 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 409 Reads contain 819 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 504 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 112 Contig length: 896 Avg. contig coverage: 1.6 Consensus contains: A: 247 C: 191 G: 210 T: 238 N: 0 IUPAC: 8 Funny: 0 *: 2 Num reads: 3 Avg. read length: 480 Reads contain 1435 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 501 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 113 Contig length: 508 Avg. contig coverage: 1.72 Consensus contains: A: 159 C: 145 G: 88 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 438 Reads contain 875 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 499 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 114 Contig length: 517 Avg. contig coverage: 1.98 Consensus contains: A: 111 C: 135 G: 110 T: 154 N: 0 IUPAC: 5 Funny: 0 *: 2 Num reads: 2 Avg. read length: 512 Reads contain 1020 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 497 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 115 Contig length: 576 Avg. contig coverage: 1.65 Consensus contains: A: 150 C: 108 G: 151 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 476 Reads contain 951 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 495 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 116 Contig length: 525 Avg. contig coverage: 2.57 Consensus contains: A: 123 C: 130 G: 144 T: 113 N: 0 IUPAC: 11 Funny: 0 *: 4 Num reads: 4 Avg. read length: 338 Reads contain 1345 bases, 0 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 491 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 117 Contig length: 607 Avg. contig coverage: 1.58 Consensus contains: A: 132 C: 155 G: 162 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 480 Reads contain 961 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 489 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 118 Contig length: 599 Avg. contig coverage: 1.79 Consensus contains: A: 118 C: 145 G: 173 T: 150 N: 0 IUPAC: 12 Funny: 0 *: 1 Num reads: 3 Avg. read length: 358 Reads contain 1074 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 486 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 119 Contig length: 668 Avg. contig coverage: 1.76 Consensus contains: A: 172 C: 128 G: 156 T: 188 N: 0 IUPAC: 22 Funny: 0 *: 2 Num reads: 3 Avg. read length: 392 Reads contain 1167 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 483 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 120 Contig length: 360 Avg. contig coverage: 1.96 Consensus contains: A: 67 C: 88 G: 82 T: 121 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 354 Reads contain 708 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 481 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 121 Contig length: 386 Avg. contig coverage: 1.9 Consensus contains: A: 93 C: 86 G: 119 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 368 Reads contain 735 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 479 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 122 Contig length: 466 Avg. contig coverage: 1.93 Consensus contains: A: 131 C: 105 G: 119 T: 109 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 452 Reads contain 900 bases, 1 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 477 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 123 Contig length: 471 Avg. contig coverage: 1.71 Consensus contains: A: 159 C: 122 G: 56 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 404 Reads contain 809 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 475 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 124 Contig length: 337 Avg. contig coverage: 2 Consensus contains: A: 78 C: 83 G: 68 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 337 Reads contain 674 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 473 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 125 Contig length: 418 Avg. contig coverage: 1.89 Consensus contains: A: 123 C: 95 G: 108 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 397 Reads contain 791 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 471 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 126 Contig length: 571 Avg. contig coverage: 1.61 Consensus contains: A: 161 C: 143 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 462 Reads contain 921 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 469 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 127 Contig length: 471 Avg. contig coverage: 1.81 Consensus contains: A: 120 C: 110 G: 111 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 855 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 467 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 128 Contig length: 351 Avg. contig coverage: 1.96 Consensus contains: A: 111 C: 86 G: 45 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 344 Reads contain 689 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 465 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 129 Contig length: 659 Avg. contig coverage: 1.37 Consensus contains: A: 182 C: 186 G: 122 T: 164 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 2 Avg. read length: 453 Reads contain 905 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 463 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 130 Contig length: 368 Avg. contig coverage: 1.97 Consensus contains: A: 90 C: 54 G: 86 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 364 Reads contain 725 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 461 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 131 Contig length: 670 Avg. contig coverage: 1.82 Consensus contains: A: 195 C: 130 G: 164 T: 157 N: 0 IUPAC: 22 Funny: 0 *: 2 Num reads: 3 Avg. read length: 408 Reads contain 1220 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 458 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 132 Contig length: 592 Avg. contig coverage: 1.58 Consensus contains: A: 146 C: 96 G: 166 T: 183 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 468 Reads contain 937 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 456 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 133 Contig length: 324 Avg. contig coverage: 2 Consensus contains: A: 119 C: 74 G: 48 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 324 Reads contain 648 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 454 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 134 Contig length: 334 Avg. contig coverage: 1.99 Consensus contains: A: 106 C: 87 G: 60 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 333 Reads contain 665 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 452 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 135 Contig length: 338 Avg. contig coverage: 1.98 Consensus contains: A: 87 C: 83 G: 79 T: 88 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 335 Reads contain 670 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 450 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 136 Contig length: 456 Avg. contig coverage: 1.94 Consensus contains: A: 118 C: 87 G: 104 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 443 Reads contain 880 bases, 3 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 448 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 137 Contig length: 356 Avg. contig coverage: 1.89 Consensus contains: A: 87 C: 77 G: 124 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 337 Reads contain 675 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 446 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 138 Contig length: 624 Avg. contig coverage: 1.53 Consensus contains: A: 133 C: 152 G: 132 T: 206 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 479 Reads contain 959 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 444 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 139 Contig length: 395 Avg. contig coverage: 1.93 Consensus contains: A: 105 C: 99 G: 97 T: 93 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 382 Reads contain 765 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 442 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 140 Contig length: 418 Avg. contig coverage: 1.82 Consensus contains: A: 109 C: 95 G: 91 T: 119 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 2 Avg. read length: 381 Reads contain 763 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 440 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 141 Contig length: 524 Avg. contig coverage: 1.79 Consensus contains: A: 117 C: 148 G: 122 T: 126 N: 0 IUPAC: 10 Funny: 0 *: 1 Num reads: 2 Avg. read length: 470 Reads contain 938 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 438 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 142 Contig length: 547 Avg. contig coverage: 1.57 Consensus contains: A: 150 C: 145 G: 104 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 430 Reads contain 860 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 436 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 143 Contig length: 384 Avg. contig coverage: 1.94 Consensus contains: A: 118 C: 54 G: 74 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 374 Reads contain 747 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 434 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 144 Contig length: 334 Avg. contig coverage: 1.99 Consensus contains: A: 145 C: 47 G: 69 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 333 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 432 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 145 Contig length: 655 Avg. contig coverage: 1.5 Consensus contains: A: 216 C: 144 G: 124 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 493 Reads contain 983 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 430 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 146 Contig length: 521 Avg. contig coverage: 1.81 Consensus contains: A: 128 C: 123 G: 134 T: 132 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 3 Avg. read length: 316 Reads contain 944 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 427 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 147 Contig length: 392 Avg. contig coverage: 1.98 Consensus contains: A: 118 C: 65 G: 87 T: 121 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 389 Reads contain 775 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 425 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 148 Contig length: 307 Avg. contig coverage: 2 Consensus contains: A: 68 C: 90 G: 62 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 307 Reads contain 614 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 423 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 149 Contig length: 577 Avg. contig coverage: 1.7 Consensus contains: A: 158 C: 116 G: 140 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 492 Reads contain 984 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 421 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 150 Contig length: 668 Avg. contig coverage: 1.66 Consensus contains: A: 169 C: 167 G: 145 T: 183 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 556 Reads contain 1107 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 419 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 151 Contig length: 636 Avg. contig coverage: 1.58 Consensus contains: A: 179 C: 157 G: 106 T: 188 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 503 Reads contain 1006 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 417 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 152 Contig length: 443 Avg. contig coverage: 1.76 Consensus contains: A: 121 C: 115 G: 100 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 390 Reads contain 779 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 415 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 153 Contig length: 530 Avg. contig coverage: 1.59 Consensus contains: A: 161 C: 119 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 422 Reads contain 843 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 413 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 154 Contig length: 444 Avg. contig coverage: 1.9 Consensus contains: A: 153 C: 101 G: 73 T: 114 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 424 Reads contain 845 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 411 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 155 Contig length: 423 Avg. contig coverage: 1.76 Consensus contains: A: 135 C: 96 G: 102 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 372 Reads contain 744 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 409 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 156 Contig length: 520 Avg. contig coverage: 2.1 Consensus contains: A: 104 C: 113 G: 122 T: 149 N: 0 IUPAC: 27 Funny: 0 *: 5 Num reads: 3 Avg. read length: 365 Reads contain 1086 bases, 0 Ns and 9 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 406 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 157 Contig length: 596 Avg. contig coverage: 1.6 Consensus contains: A: 160 C: 155 G: 108 T: 170 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 479 Reads contain 957 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 404 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 158 Contig length: 427 Avg. contig coverage: 1.97 Consensus contains: A: 128 C: 108 G: 75 T: 110 N: 0 IUPAC: 4 Funny: 0 *: 2 Num reads: 2 Avg. read length: 421 Reads contain 831 bases, 4 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 402 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 159 Contig length: 441 Avg. contig coverage: 1.71 Consensus contains: A: 108 C: 77 G: 132 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 379 Reads contain 758 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 400 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 160 Contig length: 395 Avg. contig coverage: 2.47 Consensus contains: A: 124 C: 110 G: 41 T: 115 N: 1 IUPAC: 0 Funny: 0 *: 4 Num reads: 3 Avg. read length: 326 Reads contain 969 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 397 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 161 Contig length: 330 Avg. contig coverage: 2 Consensus contains: A: 82 C: 65 G: 103 T: 78 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 330 Reads contain 659 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 395 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 162 Contig length: 362 Avg. contig coverage: 1.8 Consensus contains: A: 117 C: 99 G: 48 T: 97 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 327 Reads contain 654 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 393 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 163 Contig length: 480 Avg. contig coverage: 1.62 Consensus contains: A: 119 C: 108 G: 111 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 389 Reads contain 778 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 391 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 164 Contig length: 395 Avg. contig coverage: 1.77 Consensus contains: A: 117 C: 103 G: 76 T: 96 N: 1 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 351 Reads contain 699 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 389 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 165 Contig length: 353 Avg. contig coverage: 1.86 Consensus contains: A: 91 C: 66 G: 94 T: 98 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 329 Reads contain 657 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 387 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 166 Contig length: 524 Avg. contig coverage: 1.58 Consensus contains: A: 116 C: 84 G: 179 T: 143 N: 1 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 415 Reads contain 827 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 385 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 167 Contig length: 368 Avg. contig coverage: 1.85 Consensus contains: A: 84 C: 89 G: 84 T: 110 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 340 Reads contain 679 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 383 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 168 Contig length: 421 Avg. contig coverage: 1.65 Consensus contains: A: 112 C: 119 G: 82 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 348 Reads contain 697 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 381 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 169 Contig length: 399 Avg. contig coverage: 1.97 Consensus contains: A: 89 C: 83 G: 112 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 4 Num reads: 2 Avg. read length: 394 Reads contain 780 bases, 1 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 379 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 170 Contig length: 301 Avg. contig coverage: 2 Consensus contains: A: 91 C: 68 G: 52 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 301 Reads contain 601 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 377 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 171 Contig length: 596 Avg. contig coverage: 1.64 Consensus contains: A: 101 C: 206 G: 160 T: 119 N: 0 IUPAC: 10 Funny: 0 *: 0 Num reads: 2 Avg. read length: 490 Reads contain 979 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 375 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 172 Contig length: 439 Avg. contig coverage: 1.83 Consensus contains: A: 123 C: 131 G: 77 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 403 Reads contain 806 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 373 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 173 Contig length: 402 Avg. contig coverage: 1.85 Consensus contains: A: 102 C: 76 G: 91 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 372 Reads contain 745 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 371 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 174 Contig length: 275 Avg. contig coverage: 2 Consensus contains: A: 81 C: 53 G: 77 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 275 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 369 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 175 Contig length: 386 Avg. contig coverage: 1.9 Consensus contains: A: 102 C: 106 G: 84 T: 90 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 367 Reads contain 731 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 367 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 176 Contig length: 595 Avg. contig coverage: 1.76 Consensus contains: A: 158 C: 155 G: 111 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 1 Num reads: 2 Avg. read length: 525 Reads contain 1048 bases, 2 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 365 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 177 Contig length: 402 Avg. contig coverage: 1.7 Consensus contains: A: 93 C: 81 G: 97 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 342 Reads contain 682 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 363 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 178 Contig length: 751 Avg. contig coverage: 1.34 Consensus contains: A: 203 C: 147 G: 179 T: 222 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 503 Reads contain 1007 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 361 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 179 Contig length: 402 Avg. contig coverage: 1.96 Consensus contains: A: 94 C: 98 G: 80 T: 126 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 2 Avg. read length: 395 Reads contain 790 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 359 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 180 Contig length: 418 Avg. contig coverage: 1.96 Consensus contains: A: 90 C: 74 G: 143 T: 106 N: 0 IUPAC: 4 Funny: 0 *: 1 Num reads: 2 Avg. read length: 411 Reads contain 819 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 357 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 181 Contig length: 422 Avg. contig coverage: 1.67 Consensus contains: A: 132 C: 134 G: 55 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 352 Reads contain 704 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 355 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 182 Contig length: 664 Avg. contig coverage: 1.46 Consensus contains: A: 181 C: 179 G: 141 T: 161 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 487 Reads contain 975 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 353 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 183 Contig length: 502 Avg. contig coverage: 1.57 Consensus contains: A: 132 C: 115 G: 95 T: 157 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 395 Reads contain 789 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 351 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 184 Contig length: 438 Avg. contig coverage: 1.59 Consensus contains: A: 123 C: 127 G: 92 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 349 Reads contain 698 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 349 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 185 Contig length: 676 Avg. contig coverage: 1.86 Consensus contains: A: 172 C: 152 G: 159 T: 170 N: 0 IUPAC: 20 Funny: 0 *: 3 Num reads: 2 Avg. read length: 632 Reads contain 1247 bases, 7 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 347 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 186 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 141 C: 112 G: 158 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 544 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 346 +[1] +r RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 187 Contig length: 379 Avg. contig coverage: 1.81 Consensus contains: A: 96 C: 72 G: 102 T: 98 N: 0 IUPAC: 9 Funny: 0 *: 2 Num reads: 2 Avg. read length: 344 Reads contain 684 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 344 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 188 Contig length: 544 Avg. contig coverage: 1.53 Consensus contains: A: 179 C: 125 G: 100 T: 139 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 418 Reads contain 836 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 342 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 189 Contig length: 462 Avg. contig coverage: 1.53 Consensus contains: A: 124 C: 114 G: 102 T: 120 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 355 Reads contain 709 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 340 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 190 Contig length: 503 Avg. contig coverage: 1.9 Consensus contains: A: 138 C: 144 G: 98 T: 119 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 478 Reads contain 953 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 338 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 191 Contig length: 511 Avg. contig coverage: 1.49 Consensus contains: A: 132 C: 128 G: 108 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 383 Reads contain 765 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 336 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 192 Contig length: 450 Avg. contig coverage: 1.56 Consensus contains: A: 128 C: 119 G: 98 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 352 Reads contain 704 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 334 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 193 Contig length: 550 Avg. contig coverage: 1.43 Consensus contains: A: 204 C: 138 G: 81 T: 125 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 395 Reads contain 788 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 332 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 194 Contig length: 380 Avg. contig coverage: 1.66 Consensus contains: A: 103 C: 92 G: 81 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 316 Reads contain 632 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 330 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 195 Contig length: 467 Avg. contig coverage: 2.01 Consensus contains: A: 110 C: 123 G: 94 T: 114 N: 0 IUPAC: 25 Funny: 0 *: 1 Num reads: 3 Avg. read length: 314 Reads contain 939 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 327 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 196 Contig length: 505 Avg. contig coverage: 1.82 Consensus contains: A: 165 C: 91 G: 91 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 460 Reads contain 919 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 325 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 197 Contig length: 605 Avg. contig coverage: 1.56 Consensus contains: A: 185 C: 132 G: 117 T: 167 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 3 Avg. read length: 315 Reads contain 941 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 322 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 198 Contig length: 602 Avg. contig coverage: 1.63 Consensus contains: A: 158 C: 147 G: 123 T: 164 N: 1 IUPAC: 6 Funny: 0 *: 3 Num reads: 2 Avg. read length: 492 Reads contain 981 bases, 1 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 320 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 199 Contig length: 476 Avg. contig coverage: 1.85 Consensus contains: A: 111 C: 119 G: 113 T: 129 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 442 Reads contain 881 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 318 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 200 Contig length: 315 Avg. contig coverage: 1.86 Consensus contains: A: 74 C: 79 G: 94 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 294 Reads contain 585 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 316 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 201 Contig length: 475 Avg. contig coverage: 1.76 Consensus contains: A: 125 C: 101 G: 140 T: 106 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 2 Avg. read length: 419 Reads contain 836 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 314 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 202 Contig length: 612 Avg. contig coverage: 1.37 Consensus contains: A: 154 C: 168 G: 130 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 3 Avg. read length: 281 Reads contain 844 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 311 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 203 Contig length: 619 Avg. contig coverage: 1.62 Consensus contains: A: 146 C: 142 G: 161 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 2 Avg. read length: 504 Reads contain 1007 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 309 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 204 Contig length: 538 Avg. contig coverage: 1.77 Consensus contains: A: 153 C: 112 G: 132 T: 120 N: 0 IUPAC: 18 Funny: 0 *: 3 Num reads: 2 Avg. read length: 477 Reads contain 949 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 307 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 205 Contig length: 491 Avg. contig coverage: 1.51 Consensus contains: A: 135 C: 144 G: 108 T: 98 N: 3 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 371 Reads contain 737 bases, 4 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 305 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 206 Contig length: 847 Avg. contig coverage: 1.39 Consensus contains: A: 225 C: 187 G: 178 T: 244 N: 0 IUPAC: 11 Funny: 0 *: 2 Num reads: 3 Avg. read length: 393 Reads contain 1174 bases, 2 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 302 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 207 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 124 C: 125 G: 125 T: 160 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 534 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 301 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 208 Contig length: 842 Avg. contig coverage: 1.27 Consensus contains: A: 260 C: 172 G: 170 T: 240 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 537 Reads contain 1074 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 299 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 209 Contig length: 385 Avg. contig coverage: 1.74 Consensus contains: A: 114 C: 103 G: 76 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 336 Reads contain 671 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 297 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 210 Contig length: 275 Avg. contig coverage: 1.83 Consensus contains: A: 101 C: 60 G: 57 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 252 Reads contain 504 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 295 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 211 Contig length: 354 Avg. contig coverage: 1.62 Consensus contains: A: 91 C: 69 G: 85 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 287 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 293 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 212 Contig length: 522 Avg. contig coverage: 1.41 Consensus contains: A: 141 C: 106 G: 120 T: 155 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 370 Reads contain 741 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 291 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 213 Contig length: 523 Avg. contig coverage: 1.97 Consensus contains: A: 157 C: 61 G: 124 T: 166 N: 0 IUPAC: 11 Funny: 0 *: 4 Num reads: 2 Avg. read length: 517 Reads contain 1026 bases, 0 Ns and 8 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 289 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 214 Contig length: 393 Avg. contig coverage: 1.57 Consensus contains: A: 113 C: 103 G: 82 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 309 Reads contain 617 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 287 +[1] +++++rr RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 215 Contig length: 626 Avg. contig coverage: 2.96 Consensus contains: A: 138 C: 166 G: 160 T: 137 N: 0 IUPAC: 21 Funny: 0 *: 4 Num reads: 6 Avg. read length: 309 Reads contain 1836 bases, 0 Ns and 18 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 281 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 216 Contig length: 299 Avg. contig coverage: 1.69 Consensus contains: A: 102 C: 82 G: 36 T: 78 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 254 Reads contain 507 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 279 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 217 Contig length: 443 Avg. contig coverage: 1.73 Consensus contains: A: 131 C: 111 G: 89 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 384 Reads contain 766 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 277 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 218 Contig length: 731 Avg. contig coverage: 1.36 Consensus contains: A: 186 C: 164 G: 176 T: 200 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 2 Avg. read length: 500 Reads contain 996 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 275 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 219 Contig length: 373 Avg. contig coverage: 1.53 Consensus contains: A: 150 C: 86 G: 37 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 286 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 273 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 220 Contig length: 461 Avg. contig coverage: 1.93 Consensus contains: A: 145 C: 93 G: 102 T: 103 N: 0 IUPAC: 14 Funny: 0 *: 4 Num reads: 2 Avg. read length: 446 Reads contain 888 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 271 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 221 Contig length: 486 Avg. contig coverage: 1.42 Consensus contains: A: 146 C: 91 G: 129 T: 116 N: 3 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 346 Reads contain 690 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 269 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 222 Contig length: 448 Avg. contig coverage: 1.42 Consensus contains: A: 136 C: 82 G: 77 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 318 Reads contain 637 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 267 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 223 Contig length: 422 Avg. contig coverage: 1.63 Consensus contains: A: 101 C: 104 G: 98 T: 107 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 2 Avg. read length: 345 Reads contain 690 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 265 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 224 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 101 C: 86 G: 123 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 264 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 225 Contig length: 518 Avg. contig coverage: 1.81 Consensus contains: A: 164 C: 86 G: 131 T: 118 N: 0 IUPAC: 15 Funny: 0 *: 4 Num reads: 2 Avg. read length: 470 Reads contain 934 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 262 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 226 Contig length: 281 Avg. contig coverage: 1.96 Consensus contains: A: 70 C: 58 G: 79 T: 70 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 276 Reads contain 551 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 260 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 227 Contig length: 451 Avg. contig coverage: 1.64 Consensus contains: A: 122 C: 115 G: 111 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 2 Avg. read length: 370 Reads contain 740 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 258 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 228 Contig length: 390 Avg. contig coverage: 1.49 Consensus contains: A: 76 C: 106 G: 109 T: 97 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 291 Reads contain 582 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 256 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 229 Contig length: 434 Avg. contig coverage: 1.35 Consensus contains: A: 108 C: 97 G: 128 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 295 Reads contain 590 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 254 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 230 Contig length: 496 Avg. contig coverage: 1.43 Consensus contains: A: 158 C: 121 G: 106 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 356 Reads contain 709 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 252 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 231 Contig length: 507 Avg. contig coverage: 1.42 Consensus contains: A: 149 C: 119 G: 102 T: 132 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 2 Avg. read length: 360 Reads contain 716 bases, 2 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 250 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 232 Contig length: 576 Avg. contig coverage: 1.47 Consensus contains: A: 153 C: 167 G: 121 T: 122 N: 0 IUPAC: 9 Funny: 0 *: 4 Num reads: 2 Avg. read length: 425 Reads contain 846 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 248 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 233 Contig length: 303 Avg. contig coverage: 1.98 Consensus contains: A: 85 C: 37 G: 105 T: 74 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 300 Reads contain 597 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 246 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 234 Contig length: 486 Avg. contig coverage: 1.61 Consensus contains: A: 117 C: 133 G: 105 T: 122 N: 0 IUPAC: 3 Funny: 0 *: 6 Num reads: 2 Avg. read length: 392 Reads contain 778 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 244 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 235 Contig length: 816 Avg. contig coverage: 1.33 Consensus contains: A: 195 C: 189 G: 234 T: 192 N: 0 IUPAC: 2 Funny: 0 *: 4 Num reads: 2 Avg. read length: 545 Reads contain 1086 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 242 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 236 Contig length: 474 Avg. contig coverage: 1.8 Consensus contains: A: 98 C: 96 G: 152 T: 119 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 428 Reads contain 852 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 240 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 237 Contig length: 764 Avg. contig coverage: 1.21 Consensus contains: A: 209 C: 158 G: 184 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 465 Reads contain 931 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 238 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 238 Contig length: 519 Avg. contig coverage: 1.31 Consensus contains: A: 125 C: 133 G: 131 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 342 Reads contain 685 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 236 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 239 Contig length: 479 Avg. contig coverage: 1.46 Consensus contains: A: 94 C: 91 G: 142 T: 149 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 2 Avg. read length: 352 Reads contain 703 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 234 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 240 Contig length: 708 Avg. contig coverage: 1.24 Consensus contains: A: 167 C: 119 G: 211 T: 211 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 439 Reads contain 879 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 232 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 241 Contig length: 454 Avg. contig coverage: 1.42 Consensus contains: A: 131 C: 126 G: 93 T: 102 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 230 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 242 Contig length: 238 Avg. contig coverage: 1.88 Consensus contains: A: 69 C: 80 G: 38 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 224 Reads contain 449 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 228 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 243 Contig length: 375 Avg. contig coverage: 1.48 Consensus contains: A: 102 C: 74 G: 91 T: 106 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 277 Reads contain 554 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 226 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 244 Contig length: 412 Avg. contig coverage: 1.51 Consensus contains: A: 97 C: 85 G: 117 T: 111 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 312 Reads contain 622 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 224 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 245 Contig length: 561 Avg. contig coverage: 1.31 Consensus contains: A: 175 C: 132 G: 90 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 367 Reads contain 735 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 222 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 246 Contig length: 223 Avg. contig coverage: 1.73 Consensus contains: A: 56 C: 35 G: 73 T: 58 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 193 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 220 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 247 Contig length: 275 Avg. contig coverage: 1.78 Consensus contains: A: 76 C: 63 G: 53 T: 80 N: 0 IUPAC: 1 Funny: 0 *: 2 Num reads: 2 Avg. read length: 245 Reads contain 489 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 218 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 248 Contig length: 429 Avg. contig coverage: 1.36 Consensus contains: A: 145 C: 89 G: 74 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 292 Reads contain 585 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 216 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 249 Contig length: 473 Avg. contig coverage: 1.51 Consensus contains: A: 115 C: 117 G: 115 T: 120 N: 0 IUPAC: 3 Funny: 0 *: 3 Num reads: 2 Avg. read length: 357 Reads contain 712 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 214 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 250 Contig length: 379 Avg. contig coverage: 1.92 Consensus contains: A: 94 C: 88 G: 89 T: 94 N: 0 IUPAC: 12 Funny: 0 *: 2 Num reads: 2 Avg. read length: 365 Reads contain 723 bases, 1 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 212 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 251 Contig length: 531 Avg. contig coverage: 1.4 Consensus contains: A: 142 C: 103 G: 106 T: 173 N: 0 IUPAC: 6 Funny: 0 *: 1 Num reads: 2 Avg. read length: 373 Reads contain 745 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 210 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 252 Contig length: 539 Avg. contig coverage: 1.31 Consensus contains: A: 131 C: 157 G: 138 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 355 Reads contain 710 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 208 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 253 Contig length: 448 Avg. contig coverage: 1.51 Consensus contains: A: 118 C: 84 G: 110 T: 121 N: 0 IUPAC: 14 Funny: 0 *: 1 Num reads: 2 Avg. read length: 339 Reads contain 678 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 206 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 254 Contig length: 510 Avg. contig coverage: 1.53 Consensus contains: A: 158 C: 97 G: 115 T: 138 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 391 Reads contain 782 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 204 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 255 Contig length: 396 Avg. contig coverage: 1.42 Consensus contains: A: 87 C: 84 G: 123 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 283 Reads contain 566 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 202 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 256 Contig length: 305 Avg. contig coverage: 1.49 Consensus contains: A: 91 C: 95 G: 54 T: 64 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 227 Reads contain 454 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 200 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 257 Contig length: 254 Avg. contig coverage: 1.56 Consensus contains: A: 49 C: 42 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 198 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 198 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 258 Contig length: 269 Avg. contig coverage: 1.78 Consensus contains: A: 103 C: 59 G: 47 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 240 Reads contain 479 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 196 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 259 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 105 C: 100 G: 117 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 195 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 260 Contig length: 509 Avg. contig coverage: 1.3 Consensus contains: A: 139 C: 114 G: 119 T: 136 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 333 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 193 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 261 Contig length: 313 Avg. contig coverage: 1.47 Consensus contains: A: 111 C: 56 G: 66 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 231 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 191 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 262 Contig length: 344 Avg. contig coverage: 1.54 Consensus contains: A: 106 C: 83 G: 74 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 266 Reads contain 531 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 189 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 263 Contig length: 319 Avg. contig coverage: 1.66 Consensus contains: A: 115 C: 64 G: 55 T: 72 N: 0 IUPAC: 13 Funny: 0 *: 0 Num reads: 2 Avg. read length: 266 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 187 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 264 Contig length: 850 Avg. contig coverage: 1.19 Consensus contains: A: 230 C: 153 G: 219 T: 248 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 509 Reads contain 1017 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 185 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 265 Contig length: 400 Avg. contig coverage: 1.6 Consensus contains: A: 108 C: 91 G: 116 T: 79 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 3 Avg. read length: 214 Reads contain 643 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 182 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 266 Contig length: 460 Avg. contig coverage: 1.4 Consensus contains: A: 107 C: 91 G: 139 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 180 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 267 Contig length: 88 Avg. contig coverage: 1 Consensus contains: A: 19 C: 27 G: 23 T: 19 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 88 Reads contain 88 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 179 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 268 Contig length: 433 Avg. contig coverage: 1.66 Consensus contains: A: 113 C: 56 G: 115 T: 134 N: 0 IUPAC: 5 Funny: 0 *: 10 Num reads: 2 Avg. read length: 360 Reads contain 708 bases, 2 Ns and 10 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 177 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 269 Contig length: 560 Avg. contig coverage: 1.4 Consensus contains: A: 181 C: 135 G: 112 T: 119 N: 1 IUPAC: 11 Funny: 0 *: 1 Num reads: 2 Avg. read length: 392 Reads contain 780 bases, 1 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 175 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 270 Contig length: 334 Avg. contig coverage: 1.45 Consensus contains: A: 77 C: 49 G: 120 T: 87 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 243 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 173 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 271 Contig length: 213 Avg. contig coverage: 1.55 Consensus contains: A: 59 C: 98 G: 24 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 165 Reads contain 331 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 171 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 272 Contig length: 328 Avg. contig coverage: 1.34 Consensus contains: A: 97 C: 74 G: 67 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 221 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 169 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 273 Contig length: 393 Avg. contig coverage: 1.26 Consensus contains: A: 132 C: 88 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 249 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 167 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 274 Contig length: 274 Avg. contig coverage: 1.5 Consensus contains: A: 38 C: 90 G: 69 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 2 Avg. read length: 206 Reads contain 410 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 165 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 275 Contig length: 541 Avg. contig coverage: 1.36 Consensus contains: A: 131 C: 121 G: 142 T: 140 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 370 Reads contain 737 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 163 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 276 Contig length: 700 Avg. contig coverage: 1.14 Consensus contains: A: 202 C: 170 G: 117 T: 211 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 400 Reads contain 800 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 161 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 277 Contig length: 985 Avg. contig coverage: 1.11 Consensus contains: A: 252 C: 249 G: 248 T: 236 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 551 Reads contain 1101 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 159 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 278 Contig length: 695 Avg. contig coverage: 1.22 Consensus contains: A: 158 C: 164 G: 170 T: 201 N: 0 IUPAC: 1 Funny: 0 *: 1 Num reads: 2 Avg. read length: 424 Reads contain 846 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 157 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 279 Contig length: 199 Avg. contig coverage: 1.87 Consensus contains: A: 46 C: 50 G: 52 T: 49 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 2 Avg. read length: 186 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 155 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 280 Contig length: 442 Avg. contig coverage: 1.26 Consensus contains: A: 125 C: 62 G: 86 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 278 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 153 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 281 Contig length: 446 Avg. contig coverage: 1.21 Consensus contains: A: 114 C: 100 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 272 Reads contain 542 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 151 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 282 Contig length: 625 Avg. contig coverage: 1.3 Consensus contains: A: 167 C: 156 G: 126 T: 166 N: 1 IUPAC: 9 Funny: 0 *: 0 Num reads: 2 Avg. read length: 408 Reads contain 816 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 149 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 283 Contig length: 354 Avg. contig coverage: 1.37 Consensus contains: A: 119 C: 67 G: 70 T: 94 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 243 Reads contain 484 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 147 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 284 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 182 C: 94 G: 57 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 146 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 285 Contig length: 623 Avg. contig coverage: 1.13 Consensus contains: A: 208 C: 147 G: 134 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 353 Reads contain 707 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 144 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 286 Contig length: 312 Avg. contig coverage: 1.44 Consensus contains: A: 83 C: 90 G: 78 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 226 Reads contain 451 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 142 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 287 Contig length: 309 Avg. contig coverage: 1.37 Consensus contains: A: 90 C: 64 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 212 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 140 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 288 Contig length: 593 Avg. contig coverage: 1 Consensus contains: A: 144 C: 143 G: 167 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 593 Reads contain 593 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 139 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 289 Contig length: 384 Avg. contig coverage: 1.39 Consensus contains: A: 136 C: 90 G: 66 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 2 Num reads: 2 Avg. read length: 268 Reads contain 534 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 137 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 290 Contig length: 503 Avg. contig coverage: 1.27 Consensus contains: A: 145 C: 101 G: 114 T: 137 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 321 Reads contain 640 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 135 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 291 Contig length: 732 Avg. contig coverage: 1.1 Consensus contains: A: 148 C: 138 G: 212 T: 232 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 405 Reads contain 810 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 133 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 292 Contig length: 287 Avg. contig coverage: 1.3 Consensus contains: A: 54 C: 75 G: 62 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 187 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 131 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 293 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 49 C: 85 G: 75 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 130 +[1] +a++++++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 294 Contig length: 682 Avg. contig coverage: 5.05 Consensus contains: A: 148 C: 186 G: 155 T: 170 N: 0 IUPAC: 17 Funny: 0 *: 6 Num reads: 8 Avg. read length: 430 Reads contain 3424 bases, 3 Ns and 19 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 122 +[1] +aa+aaa RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 295 Contig length: 610 Avg. contig coverage: 2.04 Consensus contains: A: 135 C: 134 G: 168 T: 162 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 3 Avg. read length: 415 Reads contain 1237 bases, 4 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 119 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 296 Contig length: 407 Avg. contig coverage: 1.92 Consensus contains: A: 103 C: 103 G: 88 T: 107 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 2 Avg. read length: 392 Reads contain 783 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 117 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 297 Contig length: 462 Avg. contig coverage: 2.94 Consensus contains: A: 101 C: 104 G: 120 T: 134 N: 0 IUPAC: 2 Funny: 0 *: 1 Num reads: 3 Avg. read length: 453 Reads contain 1358 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 114 +[1] +++aa RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 298 Contig length: 619 Avg. contig coverage: 2.69 Consensus contains: A: 134 C: 133 G: 163 T: 171 N: 0 IUPAC: 16 Funny: 0 *: 2 Num reads: 4 Avg. read length: 416 Reads contain 1657 bases, 3 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 110 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 299 Contig length: 631 Avg. contig coverage: 2.89 Consensus contains: A: 127 C: 149 G: 165 T: 150 N: 0 IUPAC: 35 Funny: 0 *: 5 Num reads: 4 Avg. read length: 456 Reads contain 1812 bases, 0 Ns and 12 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 106 +[1] ++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 300 Contig length: 908 Avg. contig coverage: 1.82 Consensus contains: A: 223 C: 170 G: 206 T: 281 N: 0 IUPAC: 27 Funny: 0 *: 1 Num reads: 3 Avg. read length: 552 Reads contain 1657 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 103 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 301 Contig length: 433 Avg. contig coverage: 1.53 Consensus contains: A: 93 C: 95 G: 124 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 333 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 101 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 302 Contig length: 861 Avg. contig coverage: 1.4 Consensus contains: A: 273 C: 192 G: 176 T: 214 N: 0 IUPAC: 5 Funny: 0 *: 1 Num reads: 3 Avg. read length: 403 Reads contain 1208 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 98 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 303 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 79 C: 112 G: 99 T: 127 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 417 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 97 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 304 Contig length: 510 Avg. contig coverage: 1.58 Consensus contains: A: 119 C: 117 G: 117 T: 151 N: 0 IUPAC: 4 Funny: 0 *: 2 Num reads: 2 Avg. read length: 404 Reads contain 803 bases, 0 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 95 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 305 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 120 C: 153 G: 129 T: 159 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 561 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 94 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 306 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 150 C: 130 G: 134 T: 152 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 566 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 93 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 307 Contig length: 246 Avg. contig coverage: 1 Consensus contains: A: 54 C: 54 G: 62 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 246 Reads contain 246 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 92 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 308 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 143 C: 133 G: 108 T: 184 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 568 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 91 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 309 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 168 C: 120 G: 83 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 90 +[1] ++ppa RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 310 Contig length: 509 Avg. contig coverage: 2.55 Consensus contains: A: 91 C: 147 G: 115 T: 133 N: 0 IUPAC: 23 Funny: 0 *: 0 Num reads: 3 Avg. read length: 434 Reads contain 1299 bases, 0 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 87 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 311 Contig length: 549 Avg. contig coverage: 1 Consensus contains: A: 115 C: 192 G: 112 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 549 Reads contain 549 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 86 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 312 Contig length: 578 Avg. contig coverage: 1 Consensus contains: A: 175 C: 140 G: 116 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 578 Reads contain 578 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 85 +[1] +pp RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 313 Contig length: 359 Avg. contig coverage: 1.63 Consensus contains: A: 87 C: 83 G: 96 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 293 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 83 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 314 Contig length: 512 Avg. contig coverage: 1.58 Consensus contains: A: 126 C: 117 G: 104 T: 164 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 405 Reads contain 809 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 81 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 315 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 103 C: 83 G: 79 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 80 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 316 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 117 C: 118 G: 107 T: 99 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 79 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 317 Contig length: 607 Avg. contig coverage: 1.62 Consensus contains: A: 150 C: 143 G: 160 T: 153 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 493 Reads contain 986 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 77 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 318 Contig length: 639 Avg. contig coverage: 1 Consensus contains: A: 185 C: 125 G: 143 T: 185 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 639 Reads contain 638 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 76 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 319 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 114 C: 133 G: 107 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 75 +[1] ++p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 320 Contig length: 842 Avg. contig coverage: 1.68 Consensus contains: A: 222 C: 235 G: 178 T: 205 N: 0 IUPAC: 0 Funny: 0 *: 2 Num reads: 3 Avg. read length: 471 Reads contain 1412 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 72 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 321 Contig length: 423 Avg. contig coverage: 1.89 Consensus contains: A: 105 C: 96 G: 98 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 401 Reads contain 800 bases, 1 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 70 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 322 Contig length: 359 Avg. contig coverage: 1.54 Consensus contains: A: 89 C: 81 G: 73 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 276 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 68 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 323 Contig length: 544 Avg. contig coverage: 1.92 Consensus contains: A: 177 C: 134 G: 100 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 522 Reads contain 1044 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 66 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 324 Contig length: 616 Avg. contig coverage: 1 Consensus contains: A: 178 C: 144 G: 155 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 616 Reads contain 615 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 65 +[1] +++p RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 325 Contig length: 425 Avg. contig coverage: 3.52 Consensus contains: A: 106 C: 114 G: 100 T: 95 N: 0 IUPAC: 6 Funny: 0 *: 4 Num reads: 4 Avg. read length: 374 Reads contain 1486 bases, 0 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 61 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 326 Contig length: 261 Avg. contig coverage: 1 Consensus contains: A: 39 C: 65 G: 75 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 261 Reads contain 261 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 60 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 327 Contig length: 583 Avg. contig coverage: 1 Consensus contains: A: 169 C: 114 G: 148 T: 152 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 583 Reads contain 583 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 59 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 328 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 101 C: 59 G: 136 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 58 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 329 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 53 C: 38 G: 87 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 57 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 330 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 99 C: 116 G: 99 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 56 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 331 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 91 C: 100 G: 86 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 55 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 332 Contig length: 604 Avg. contig coverage: 1 Consensus contains: A: 145 C: 145 G: 163 T: 150 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 604 Reads contain 603 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 54 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 333 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 122 C: 101 G: 114 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 53 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 334 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 86 C: 110 G: 70 T: 46 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 52 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 335 Contig length: 493 Avg. contig coverage: 1.51 Consensus contains: A: 97 C: 145 G: 115 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 1 Num reads: 2 Avg. read length: 374 Reads contain 746 bases, 1 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 50 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 336 Contig length: 492 Avg. contig coverage: 1.33 Consensus contains: A: 137 C: 116 G: 142 T: 96 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 328 Reads contain 657 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 48 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 337 Contig length: 247 Avg. contig coverage: 1 Consensus contains: A: 81 C: 54 G: 74 T: 38 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 247 Reads contain 247 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 47 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 338 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 47 C: 47 G: 39 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 46 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 339 Contig length: 456 Avg. contig coverage: 1.58 Consensus contains: A: 122 C: 128 G: 73 T: 123 N: 0 IUPAC: 5 Funny: 0 *: 5 Num reads: 2 Avg. read length: 362 Reads contain 718 bases, 0 Ns and 6 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 44 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 340 Contig length: 182 Avg. contig coverage: 1 Consensus contains: A: 44 C: 35 G: 60 T: 43 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 182 Reads contain 182 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 43 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 341 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 96 C: 100 G: 107 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 410 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 42 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 342 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 87 C: 71 G: 61 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 41 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 343 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 137 C: 106 G: 112 T: 136 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 491 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 40 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 344 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 116 C: 115 G: 125 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 453 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 39 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 345 Contig length: 437 Avg. contig coverage: 1.89 Consensus contains: A: 126 C: 112 G: 94 T: 98 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 414 Reads contain 823 bases, 2 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 37 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 346 Contig length: 171 Avg. contig coverage: 1 Consensus contains: A: 39 C: 43 G: 48 T: 40 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 171 Reads contain 170 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 36 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 347 Contig length: 134 Avg. contig coverage: 1 Consensus contains: A: 41 C: 27 G: 38 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 134 Reads contain 134 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 35 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 348 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 62 C: 52 G: 75 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 34 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 349 Contig length: 174 Avg. contig coverage: 1 Consensus contains: A: 40 C: 50 G: 47 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 174 Reads contain 174 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 33 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 350 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 70 C: 88 G: 94 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 32 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 351 Contig length: 395 Avg. contig coverage: 1 Consensus contains: A: 102 C: 98 G: 84 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 395 Reads contain 395 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 31 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 352 Contig length: 136 Avg. contig coverage: 1 Consensus contains: A: 26 C: 30 G: 36 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 136 Reads contain 136 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 30 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 353 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 112 C: 79 G: 91 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 403 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 29 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 354 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 134 C: 92 G: 131 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 28 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 355 Contig length: 264 Avg. contig coverage: 1 Consensus contains: A: 51 C: 64 G: 92 T: 57 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 264 Reads contain 264 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 27 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 356 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 145 C: 121 G: 148 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 26 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 357 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 119 C: 131 G: 109 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 25 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 358 Contig length: 357 Avg. contig coverage: 1.81 Consensus contains: A: 114 C: 97 G: 53 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 2 Avg. read length: 323 Reads contain 647 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 23 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 359 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 116 C: 115 G: 75 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 430 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 22 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 360 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 136 C: 116 G: 124 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 492 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 21 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 361 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 153 C: 90 G: 117 T: 105 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 465 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 20 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 362 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 83 C: 107 G: 120 T: 118 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 428 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 19 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 363 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 84 C: 87 G: 118 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 18 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 364 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 105 C: 107 G: 100 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 17 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 365 Contig length: 308 Avg. contig coverage: 1 Consensus contains: A: 75 C: 82 G: 84 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 308 Reads contain 308 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 16 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 366 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 74 C: 73 G: 87 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 15 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 367 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 129 C: 107 G: 113 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 14 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 368 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 77 C: 88 G: 114 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 13 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 369 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 102 C: 85 G: 117 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 12 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 370 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 114 C: 118 G: 114 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 11 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 371 Contig length: 295 Avg. contig coverage: 1 Consensus contains: A: 73 C: 69 G: 70 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 295 Reads contain 295 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 10 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 372 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 53 C: 26 G: 30 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 9 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 373 Contig length: 237 Avg. contig coverage: 1 Consensus contains: A: 74 C: 55 G: 60 T: 48 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 237 Reads contain 237 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 8 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 374 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 92 C: 95 G: 59 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 7 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 375 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 112 C: 113 G: 118 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 452 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 6 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 376 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 90 C: 75 G: 60 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 5 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 377 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 74 C: 75 G: 85 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 4 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 378 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 76 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 3 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 379 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 102 C: 102 G: 105 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 2 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 380 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 103 C: 87 G: 106 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 381 Contig length: 157 Avg. contig coverage: 1 Consensus contains: A: 37 C: 35 G: 46 T: 39 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 157 Reads contain 157 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: default_log/default_info_contigstats_pass.1.txt Saving read tag list to file: default_log/default_info_readtaglist.1.txt Saving contig tag list to file: default_log/default_info_consensustaglist.1.txt Saving project contig<->read list to file: default_log/default_info_contigreadlist_pass.1.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: default_info/default_info_contigstats.txt Localtime: Thu Jul 15 12:00:00 2010 Saving read tag list to file: default_info/default_info_readtaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contig tag list to file: default_info/default_info_consensustaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project contig<->read list to file: default_info/default_info_contigreadlist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to file: default_results/default_out.caf Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to directory: default_results/default_out.gap4da (first deleting old directory) (now creating new directory) (saving contigs) Done. Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to FASTA file: default_results/default_out.unpadded.fasta Saving padded contigs to FASTA file: default_results/default_out.padded.fasta Saving contig qualities to FASTA quality file: default_results/default_out.unpadded.fasta.qual Saving padded contig qualities to FASTA quality file: default_results/default_out.padded.fasta.qual Localtime: Thu Jul 15 12:00:00 2010 Saving SNP analysis to file: default_info/default_info_snpanalysis.txt Finished assembly, extracting contigs. Assembly of strain step1_nosnps_remain.caf(remain) Creating directory remain_log ... done. Creating directory remain_results ... done. Creating directory remain_info ... done. Localtime: Thu Jul 15 12:00:00 2010 Loading project from CAF file: step1_nosnps_remain.caf [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Loading straindata. Building hash table ... done. Read 0 straindata lines. Warning: gnlti136477494 has no strain. Using default strain. Warning: gnlti136477495 has no strain. Using default strain. Warning: gnlti136477496 has no strain. Using default strain. Warning: gnlti136477497 has no strain. Using default strain. Warning: gnlti136477500 has no strain. Using default strain. Warning: gnlti136477502 has no strain. Using default strain. Warning: gnlti136477503 has no strain. Using default strain. Warning: gnlti136477504 has no strain. Using default strain. Warning: gnlti136477507 has no strain. Using default strain. Warning: gnlti136477511 has no strain. Using default strain. Warning: gnlti136477512 has no strain. Using default strain. Warning: gnlti136477513 has no strain. Using default strain. Warning: gnlti136477514 has no strain. Using default strain. Warning: gnlti136477516 has no strain. Using default strain. Warning: gnlti136477517 has no strain. Using default strain. Warning: gnlti136477518 has no strain. Using default strain. Warning: gnlti136477519 has no strain. Using default strain. Warning: gnlti136477520 has no strain. Using default strain. Warning: gnlti136477521 has no strain. Using default strain. Warning: gnlti136477522 has no strain. Using default strain. Warning: gnlti136477524 has no strain. Using default strain. Warning: gnlti136477526 has no strain. Using default strain. Warning: gnlti136477527 has no strain. Using default strain. Warning: gnlti136477530 has no strain. Using default strain. Warning: gnlti136477531 has no strain. Using default strain. Warning: gnlti136477532 has no strain. Using default strain. Warning: gnlti136477534 has no strain. Using default strain. Warning: gnlti136477536 has no strain. Using default strain. Warning: gnlti136477537 has no strain. Using default strain. Warning: gnlti136477538 has no strain. Using default strain. Warning: gnlti136477540 has no strain. Using default strain. Warning: gnlti136477541 has no strain. Using default strain. Warning: gnlti136477542 has no strain. Using default strain. Warning: gnlti136477543 has no strain. Using default strain. Warning: gnlti136477544 has no strain. Using default strain. Warning: gnlti136477546 has no strain. Using default strain. Warning: gnlti136477547 has no strain. Using default strain. Warning: gnlti136477548 has no strain. Using default strain. Warning: gnlti136477550 has no strain. Using default strain. Warning: gnlti136477551 has no strain. Using default strain. Warning: gnlti136477552 has no strain. Using default strain. Warning: gnlti136477553 has no strain. Using default strain. Warning: gnlti136477554 has no strain. Using default strain. Warning: gnlti136477556 has no strain. Using default strain. Warning: gnlti136477558 has no strain. Using default strain. Warning: gnlti136477563 has no strain. Using default strain. Warning: gnlti136477564 has no strain. Using default strain. Warning: gnlti136477565 has no strain. Using default strain. Warning: gnlti136477566 has no strain. Using default strain. Warning: gnlti136477567 has no strain. Using default strain. Warning: gnlti136477569 has no strain. Using default strain. Warning: gnlti136477571 has no strain. Using default strain. Warning: gnlti136477572 has no strain. Using default strain. Warning: gnlti136477574 has no strain. Using default strain. Warning: gnlti136477576 has no strain. Using default strain. Warning: gnlti136477577 has no strain. Using default strain. Warning: gnlti136477578 has no strain. Using default strain. Warning: gnlti136477581 has no strain. Using default strain. Warning: gnlti136477582 has no strain. Using default strain. Warning: gnlti136477583 has no strain. Using default strain. Warning: gnlti136477584 has no strain. Using default strain. Warning: gnlti136477585 has no strain. Using default strain. Warning: gnlti136477586 has no strain. Using default strain. Warning: gnlti136477587 has no strain. Using default strain. Warning: gnlti136477589 has no strain. Using default strain. Warning: gnlti136477590 has no strain. Using default strain. Warning: gnlti136477594 has no strain. Using default strain. Warning: gnlti136477595 has no strain. Using default strain. Warning: gnlti136477596 has no strain. Using default strain. Warning: gnlti136477597 has no strain. Using default strain. Warning: gnlti136477598 has no strain. Using default strain. Warning: gnlti136477599 has no strain. Using default strain. Warning: gnlti136477600 has no strain. Using default strain. Warning: gnlti136477601 has no strain. Using default strain. Warning: gnlti136477602 has no strain. Using default strain. Warning: gnlti136477603 has no strain. Using default strain. Warning: gnlti136477604 has no strain. Using default strain. Warning: gnlti136477606 has no strain. Using default strain. Warning: gnlti136477607 has no strain. Using default strain. Warning: gnlti136477608 has no strain. Using default strain. Warning: gnlti136477610 has no strain. Using default strain. Warning: gnlti136477611 has no strain. Using default strain. Warning: gnlti136477612 has no strain. Using default strain. Warning: gnlti136477613 has no strain. Using default strain. Warning: gnlti136477614 has no strain. Using default strain. Warning: gnlti136477620 has no strain. Using default strain. Warning: gnlti136477621 has no strain. Using default strain. Warning: gnlti136477622 has no strain. Using default strain. Warning: gnlti136477623 has no strain. Using default strain. Warning: gnlti136477624 has no strain. Using default strain. Warning: gnlti136477625 has no strain. Using default strain. Warning: gnlti136477626 has no strain. Using default strain. Warning: gnlti136477627 has no strain. Using default strain. Warning: gnlti136477630 has no strain. Using default strain. Warning: gnlti136477632 has no strain. Using default strain. Warning: gnlti136477633 has no strain. Using default strain. Warning: gnlti136477634 has no strain. Using default strain. Warning: gnlti136477635 has no strain. Using default strain. Warning: gnlti136477636 has no strain. Using default strain. Warning: gnlti136477638 has no strain. Using default strain. Warning: gnlti136477639 has no strain. Using default strain. Warning: gnlti136477640 has no strain. Using default strain. Warning: gnlti136477641 has no strain. Using default strain. Warning: gnlti136477643 has no strain. Using default strain. Warning: gnlti136477644 has no strain. Using default strain. Warning: gnlti136477645 has no strain. Using default strain. Warning: gnlti136477646 has no strain. Using default strain. Warning: gnlti136477647 has no strain. Using default strain. Warning: gnlti136477648 has no strain. Using default strain. Warning: gnlti136477649 has no strain. Using default strain. Warning: gnlti136477650 has no strain. Using default strain. Warning: gnlti136477651 has no strain. Using default strain. Warning: gnlti136477652 has no strain. Using default strain. Warning: gnlti136477653 has no strain. Using default strain. Warning: gnlti136477654 has no strain. Using default strain. Warning: gnlti136477655 has no strain. Using default strain. Warning: gnlti136477656 has no strain. Using default strain. Warning: gnlti136477658 has no strain. Using default strain. Warning: gnlti136477659 has no strain. Using default strain. Warning: gnlti136477660 has no strain. Using default strain. Warning: gnlti136477661 has no strain. Using default strain. Warning: gnlti136477663 has no strain. Using default strain. Warning: gnlti136477664 has no strain. Using default strain. Warning: gnlti136477665 has no strain. Using default strain. Warning: gnlti136477667 has no strain. Using default strain. Warning: gnlti136477668 has no strain. Using default strain. Warning: gnlti136477669 has no strain. Using default strain. Warning: gnlti136477674 has no strain. Using default strain. Warning: gnlti136477678 has no strain. Using default strain. Warning: gnlti136477680 has no strain. Using default strain. Warning: gnlti136477681 has no strain. Using default strain. Warning: gnlti136477683 has no strain. Using default strain. Warning: gnlti136477685 has no strain. Using default strain. Warning: gnlti136477686 has no strain. Using default strain. Warning: gnlti136477687 has no strain. Using default strain. Warning: gnlti136477689 has no strain. Using default strain. Warning: gnlti136477690 has no strain. Using default strain. Warning: gnlti136477691 has no strain. Using default strain. Warning: gnlti136477692 has no strain. Using default strain. Warning: gnlti136477694 has no strain. Using default strain. Warning: gnlti136477695 has no strain. Using default strain. Warning: gnlti136477696 has no strain. Using default strain. Warning: gnlti136477697 has no strain. Using default strain. Warning: gnlti136477698 has no strain. Using default strain. Warning: gnlti136477700 has no strain. Using default strain. Warning: gnlti136477701 has no strain. Using default strain. Warning: gnlti136477704 has no strain. Using default strain. Warning: gnlti136477705 has no strain. Using default strain. Warning: gnlti136477706 has no strain. Using default strain. Warning: gnlti136477707 has no strain. Using default strain. Warning: gnlti136477708 has no strain. Using default strain. Warning: gnlti136477709 has no strain. Using default strain. Warning: gnlti136477710 has no strain. Using default strain. Warning: gnlti136477711 has no strain. Using default strain. Warning: gnlti136477712 has no strain. Using default strain. Warning: gnlti136477713 has no strain. Using default strain. Warning: gnlti136477714 has no strain. Using default strain. Warning: gnlti136477715 has no strain. Using default strain. Warning: gnlti136477716 has no strain. Using default strain. Warning: gnlti136477717 has no strain. Using default strain. Warning: gnlti136477719 has no strain. Using default strain. Warning: gnlti136477720 has no strain. Using default strain. Warning: gnlti136477721 has no strain. Using default strain. Warning: gnlti136477723 has no strain. Using default strain. Warning: gnlti136477724 has no strain. Using default strain. Warning: gnlti136477725 has no strain. Using default strain. Warning: gnlti136477727 has no strain. Using default strain. Warning: gnlti136477729 has no strain. Using default strain. Warning: gnlti136477730 has no strain. Using default strain. Warning: gnlti136477731 has no strain. Using default strain. Warning: gnlti136477733 has no strain. Using default strain. Warning: gnlti136477735 has no strain. Using default strain. Warning: gnlti136477736 has no strain. Using default strain. Warning: gnlti136477737 has no strain. Using default strain. Warning: gnlti136477738 has no strain. Using default strain. Warning: gnlti136477740 has no strain. Using default strain. Warning: gnlti136477741 has no strain. Using default strain. Warning: gnlti136477742 has no strain. Using default strain. Warning: gnlti136477743 has no strain. Using default strain. Warning: gnlti136477744 has no strain. Using default strain. Warning: gnlti136477745 has no strain. Using default strain. Warning: gnlti136477747 has no strain. Using default strain. Warning: gnlti136477748 has no strain. Using default strain. Warning: gnlti136477749 has no strain. Using default strain. Warning: gnlti136477750 has no strain. Using default strain. Warning: gnlti136477751 has no strain. Using default strain. Warning: gnlti136477754 has no strain. Using default strain. Warning: gnlti136477756 has no strain. Using default strain. Warning: gnlti136477757 has no strain. Using default strain. Warning: gnlti136477758 has no strain. Using default strain. Warning: gnlti136477759 has no strain. Using default strain. Warning: gnlti136477761 has no strain. Using default strain. Warning: gnlti136477762 has no strain. Using default strain. Warning: gnlti136477763 has no strain. Using default strain. Warning: gnlti136477764 has no strain. Using default strain. Warning: gnlti136477765 has no strain. Using default strain. Warning: gnlti136477766 has no strain. Using default strain. Warning: gnlti136477767 has no strain. Using default strain. Warning: gnlti136477768 has no strain. Using default strain. Warning: gnlti136477769 has no strain. Using default strain. Warning: gnlti136477770 has no strain. Using default strain. Warning: gnlti136477771 has no strain. Using default strain. Warning: gnlti136477773 has no strain. Using default strain. Warning: gnlti136477774 has no strain. Using default strain. Warning: gnlti136477775 has no strain. Using default strain. Warning: gnlti136477776 has no strain. Using default strain. Warning: gnlti136477777 has no strain. Using default strain. Warning: gnlti136477779 has no strain. Using default strain. Warning: gnlti136477780 has no strain. Using default strain. Warning: gnlti136477781 has no strain. Using default strain. Warning: gnlti136477788 has no strain. Using default strain. Warning: gnlti136477789 has no strain. Using default strain. Warning: gnlti136477790 has no strain. Using default strain. Warning: gnlti136477792 has no strain. Using default strain. Warning: gnlti136477794 has no strain. Using default strain. Warning: gnlti136477797 has no strain. Using default strain. Warning: gnlti136477798 has no strain. Using default strain. Warning: gnlti136477799 has no strain. Using default strain. Warning: gnlti136477800 has no strain. Using default strain. Warning: gnlti136477801 has no strain. Using default strain. Warning: gnlti136477802 has no strain. Using default strain. Warning: gnlti136477803 has no strain. Using default strain. Warning: gnlti136477804 has no strain. Using default strain. Warning: gnlti136477805 has no strain. Using default strain. Warning: gnlti136477806 has no strain. Using default strain. Warning: gnlti136477807 has no strain. Using default strain. Warning: gnlti136477808 has no strain. Using default strain. Warning: gnlti136477809 has no strain. Using default strain. Warning: gnlti136477811 has no strain. Using default strain. Warning: gnlti136477812 has no strain. Using default strain. Warning: gnlti136477814 has no strain. Using default strain. Warning: gnlti136477815 has no strain. Using default strain. Warning: gnlti136477816 has no strain. Using default strain. Warning: gnlti136477818 has no strain. Using default strain. Warning: gnlti136477819 has no strain. Using default strain. Warning: gnlti136477820 has no strain. Using default strain. Warning: gnlti136477821 has no strain. Using default strain. Warning: gnlti136477823 has no strain. Using default strain. Warning: gnlti136477824 has no strain. Using default strain. Warning: gnlti136477825 has no strain. Using default strain. Warning: gnlti136477826 has no strain. Using default strain. Warning: gnlti136477827 has no strain. Using default strain. Warning: gnlti136477828 has no strain. Using default strain. Warning: gnlti136477829 has no strain. Using default strain. Warning: gnlti136477830 has no strain. Using default strain. Warning: gnlti136477831 has no strain. Using default strain. Warning: gnlti136477832 has no strain. Using default strain. Warning: gnlti136477833 has no strain. Using default strain. Warning: gnlti136477834 has no strain. Using default strain. Warning: gnlti136477835 has no strain. Using default strain. Warning: gnlti136477836 has no strain. Using default strain. Warning: gnlti136477837 has no strain. Using default strain. Warning: gnlti136477839 has no strain. Using default strain. Warning: gnlti136477840 has no strain. Using default strain. Warning: gnlti136477841 has no strain. Using default strain. Warning: gnlti136477842 has no strain. Using default strain. Warning: gnlti136477843 has no strain. Using default strain. Warning: gnlti136477844 has no strain. Using default strain. Warning: gnlti136477845 has no strain. Using default strain. Warning: gnlti136477846 has no strain. Using default strain. Warning: gnlti136477847 has no strain. Using default strain. Warning: gnlti136477848 has no strain. Using default strain. Warning: gnlti136477849 has no strain. Using default strain. Warning: gnlti136477850 has no strain. Using default strain. Warning: gnlti136477852 has no strain. Using default strain. Warning: gnlti136477853 has no strain. Using default strain. Warning: gnlti136477854 has no strain. Using default strain. Warning: gnlti136477855 has no strain. Using default strain. Warning: gnlti136477856 has no strain. Using default strain. Warning: gnlti136477857 has no strain. Using default strain. Warning: gnlti136477858 has no strain. Using default strain. Warning: gnlti136477859 has no strain. Using default strain. Warning: gnlti136477860 has no strain. Using default strain. Warning: gnlti136477861 has no strain. Using default strain. Warning: gnlti136477863 has no strain. Using default strain. Warning: gnlti136477864 has no strain. Using default strain. Warning: gnlti136477865 has no strain. Using default strain. Warning: gnlti136477866 has no strain. Using default strain. Warning: gnlti136477867 has no strain. Using default strain. Warning: gnlti136477868 has no strain. Using default strain. Warning: gnlti136477869 has no strain. Using default strain. Warning: gnlti136477870 has no strain. Using default strain. Warning: gnlti136477871 has no strain. Using default strain. Warning: gnlti136477872 has no strain. Using default strain. Warning: gnlti136477873 has no strain. Using default strain. Warning: gnlti136477874 has no strain. Using default strain. Warning: gnlti136477875 has no strain. Using default strain. Warning: gnlti136477877 has no strain. Using default strain. Warning: gnlti136477878 has no strain. Using default strain. Warning: gnlti136477879 has no strain. Using default strain. Warning: gnlti136477881 has no strain. Using default strain. Warning: gnlti136477882 has no strain. Using default strain. Warning: gnlti136477883 has no strain. Using default strain. Warning: gnlti136477886 has no strain. Using default strain. Warning: gnlti136477887 has no strain. Using default strain. Warning: gnlti136477893 has no strain. Using default strain. Warning: gnlti136477895 has no strain. Using default strain. Warning: gnlti136477896 has no strain. Using default strain. Warning: gnlti136477898 has no strain. Using default strain. Warning: gnlti136477899 has no strain. Using default strain. Warning: gnlti136477903 has no strain. Using default strain. Warning: gnlti136477905 has no strain. Using default strain. Warning: gnlti136477906 has no strain. Using default strain. Warning: gnlti136477908 has no strain. Using default strain. Warning: gnlti136477909 has no strain. Using default strain. Warning: gnlti136477910 has no strain. Using default strain. Warning: gnlti136477911 has no strain. Using default strain. Warning: gnlti136477912 has no strain. Using default strain. Warning: gnlti136477913 has no strain. Using default strain. Warning: gnlti136477914 has no strain. Using default strain. Warning: gnlti136477915 has no strain. Using default strain. Warning: gnlti136477917 has no strain. Using default strain. Warning: gnlti136477919 has no strain. Using default strain. Warning: gnlti136477920 has no strain. Using default strain. Warning: gnlti136477921 has no strain. Using default strain. Warning: gnlti136477922 has no strain. Using default strain. Warning: gnlti136477923 has no strain. Using default strain. Warning: gnlti136477924 has no strain. Using default strain. Warning: gnlti136477925 has no strain. Using default strain. Warning: gnlti136477927 has no strain. Using default strain. Warning: gnlti136477928 has no strain. Using default strain. Warning: gnlti136477929 has no strain. Using default strain. Warning: gnlti136477931 has no strain. Using default strain. Warning: gnlti136477932 has no strain. Using default strain. Warning: gnlti136477934 has no strain. Using default strain. Warning: gnlti136477936 has no strain. Using default strain. Warning: gnlti136477941 has no strain. Using default strain. Warning: gnlti136477942 has no strain. Using default strain. Warning: gnlti136477944 has no strain. Using default strain. Warning: gnlti136477945 has no strain. Using default strain. Warning: gnlti136477946 has no strain. Using default strain. Warning: gnlti136477948 has no strain. Using default strain. Warning: gnlti136477949 has no strain. Using default strain. Warning: gnlti136477950 has no strain. Using default strain. Warning: gnlti136477951 has no strain. Using default strain. Warning: gnlti136477952 has no strain. Using default strain. Warning: gnlti136477953 has no strain. Using default strain. Warning: gnlti136477954 has no strain. Using default strain. Warning: gnlti136477956 has no strain. Using default strain. Warning: gnlti136477957 has no strain. Using default strain. Warning: gnlti136477958 has no strain. Using default strain. Warning: gnlti136477959 has no strain. Using default strain. Warning: gnlti136477960 has no strain. Using default strain. Warning: gnlti136477963 has no strain. Using default strain. Warning: gnlti136477964 has no strain. Using default strain. Warning: gnlti136477965 has no strain. Using default strain. Warning: gnlti136477966 has no strain. Using default strain. Warning: gnlti136477969 has no strain. Using default strain. Warning: gnlti136477970 has no strain. Using default strain. Warning: gnlti136477973 has no strain. Using default strain. Warning: gnlti136477974 has no strain. Using default strain. Warning: gnlti136477975 has no strain. Using default strain. Warning: gnlti136477976 has no strain. Using default strain. Warning: gnlti136477979 has no strain. Using default strain. Warning: gnlti136477980 has no strain. Using default strain. Warning: gnlti136477982 has no strain. Using default strain. Warning: gnlti136477985 has no strain. Using default strain. Warning: gnlti136477986 has no strain. Using default strain. Warning: gnlti136477990 has no strain. Using default strain. Warning: gnlti136477991 has no strain. Using default strain. Warning: gnlti136477992 has no strain. Using default strain. Warning: gnlti136477993 has no strain. Using default strain. Warning: gnlti136477996 has no strain. Using default strain. Warning: gnlti136477998 has no strain. Using default strain. Warning: gnlti136477999 has no strain. Using default strain. Warning: gnlti136478000 has no strain. Using default strain. Warning: gnlti136478001 has no strain. Using default strain. Warning: gnlti136478002 has no strain. Using default strain. Warning: gnlti136478004 has no strain. Using default strain. Warning: gnlti136478005 has no strain. Using default strain. Warning: gnlti136478007 has no strain. Using default strain. Warning: gnlti136478009 has no strain. Using default strain. Warning: gnlti136478010 has no strain. Using default strain. Warning: gnlti136478013 has no strain. Using default strain. Warning: gnlti136478014 has no strain. Using default strain. Warning: gnlti136478016 has no strain. Using default strain. Warning: gnlti136478017 has no strain. Using default strain. Warning: gnlti136478018 has no strain. Using default strain. Warning: gnlti136478021 has no strain. Using default strain. Warning: gnlti136478022 has no strain. Using default strain. Warning: gnlti136478023 has no strain. Using default strain. Warning: gnlti136478025 has no strain. Using default strain. Warning: gnlti136478026 has no strain. Using default strain. Warning: gnlti136478027 has no strain. Using default strain. Warning: gnlti136478028 has no strain. Using default strain. Warning: gnlti136478029 has no strain. Using default strain. Warning: gnlti136478030 has no strain. Using default strain. Warning: gnlti136478034 has no strain. Using default strain. Warning: gnlti136478035 has no strain. Using default strain. Warning: gnlti136478036 has no strain. Using default strain. Warning: gnlti136478038 has no strain. Using default strain. Warning: gnlti136478039 has no strain. Using default strain. Warning: gnlti136478040 has no strain. Using default strain. Warning: gnlti136478041 has no strain. Using default strain. Warning: gnlti136478043 has no strain. Using default strain. Warning: gnlti136478044 has no strain. Using default strain. Warning: gnlti136478045 has no strain. Using default strain. Warning: gnlti136478046 has no strain. Using default strain. Warning: gnlti136478049 has no strain. Using default strain. Warning: gnlti136478050 has no strain. Using default strain. Warning: gnlti136478052 has no strain. Using default strain. Warning: gnlti136478054 has no strain. Using default strain. Warning: gnlti136478055 has no strain. Using default strain. Warning: gnlti136478056 has no strain. Using default strain. Warning: gnlti136478058 has no strain. Using default strain. Warning: gnlti136478059 has no strain. Using default strain. Warning: gnlti136478060 has no strain. Using default strain. Warning: gnlti136478061 has no strain. Using default strain. Warning: gnlti136478062 has no strain. Using default strain. Warning: gnlti136478063 has no strain. Using default strain. Warning: gnlti136478065 has no strain. Using default strain. Warning: gnlti136478066 has no strain. Using default strain. Warning: gnlti136478067 has no strain. Using default strain. Warning: gnlti136478068 has no strain. Using default strain. Warning: gnlti136478069 has no strain. Using default strain. Warning: gnlti136478071 has no strain. Using default strain. Warning: gnlti136478073 has no strain. Using default strain. Warning: gnlti136478074 has no strain. Using default strain. Warning: gnlti136478075 has no strain. Using default strain. Warning: gnlti136478076 has no strain. Using default strain. Warning: gnlti136478077 has no strain. Using default strain. Warning: gnlti136478080 has no strain. Using default strain. Warning: gnlti136478083 has no strain. Using default strain. Warning: gnlti136478085 has no strain. Using default strain. Warning: gnlti136478086 has no strain. Using default strain. Warning: gnlti136478087 has no strain. Using default strain. Warning: gnlti136478088 has no strain. Using default strain. Warning: gnlti136478089 has no strain. Using default strain. Warning: gnlti136478091 has no strain. Using default strain. Warning: gnlti136478093 has no strain. Using default strain. Warning: gnlti136478095 has no strain. Using default strain. Warning: gnlti136478096 has no strain. Using default strain. Warning: gnlti136478097 has no strain. Using default strain. Warning: gnlti136478098 has no strain. Using default strain. Warning: gnlti136478099 has no strain. Using default strain. Warning: gnlti136478101 has no strain. Using default strain. Warning: gnlti136478103 has no strain. Using default strain. Warning: gnlti136478104 has no strain. Using default strain. Warning: gnlti136478105 has no strain. Using default strain. Warning: gnlti136478107 has no strain. Using default strain. Warning: gnlti136478108 has no strain. Using default strain. Warning: gnlti136478110 has no strain. Using default strain. Warning: gnlti136478112 has no strain. Using default strain. Warning: gnlti136478113 has no strain. Using default strain. Warning: gnlti136478114 has no strain. Using default strain. Warning: gnlti136478115 has no strain. Using default strain. Warning: gnlti136478118 has no strain. Using default strain. Warning: gnlti136478119 has no strain. Using default strain. Warning: gnlti136478122 has no strain. Using default strain. Warning: gnlti136478123 has no strain. Using default strain. Warning: gnlti136478124 has no strain. Using default strain. Warning: gnlti136478125 has no strain. Using default strain. Warning: gnlti136478126 has no strain. Using default strain. Warning: gnlti136478128 has no strain. Using default strain. Warning: gnlti136478129 has no strain. Using default strain. Warning: gnlti136478130 has no strain. Using default strain. Warning: gnlti136478131 has no strain. Using default strain. Warning: gnlti136478132 has no strain. Using default strain. Warning: gnlti136478133 has no strain. Using default strain. Warning: gnlti136478134 has no strain. Using default strain. Warning: gnlti136478136 has no strain. Using default strain. Warning: gnlti136478137 has no strain. Using default strain. Warning: gnlti136478138 has no strain. Using default strain. Warning: gnlti136478140 has no strain. Using default strain. Warning: gnlti136478141 has no strain. Using default strain. Warning: gnlti136478142 has no strain. Using default strain. Warning: gnlti136478143 has no strain. Using default strain. Warning: gnlti136478145 has no strain. Using default strain. Warning: gnlti136478146 has no strain. Using default strain. Warning: gnlti136478147 has no strain. Using default strain. Warning: gnlti136478148 has no strain. Using default strain. Warning: gnlti136478150 has no strain. Using default strain. Warning: gnlti136478152 has no strain. Using default strain. Warning: gnlti136478154 has no strain. Using default strain. Warning: gnlti136478155 has no strain. Using default strain. Warning: gnlti136478156 has no strain. Using default strain. Warning: gnlti136478157 has no strain. Using default strain. Warning: gnlti136478158 has no strain. Using default strain. Warning: gnlti136478159 has no strain. Using default strain. Warning: gnlti136478161 has no strain. Using default strain. Warning: gnlti136478162 has no strain. Using default strain. Warning: gnlti136478163 has no strain. Using default strain. Warning: gnlti136478164 has no strain. Using default strain. Warning: gnlti136478165 has no strain. Using default strain. Warning: gnlti136478167 has no strain. Using default strain. Warning: gnlti136478168 has no strain. Using default strain. Warning: gnlti136478169 has no strain. Using default strain. Warning: gnlti136478170 has no strain. Using default strain. Warning: gnlti136478171 has no strain. Using default strain. Warning: gnlti136478172 has no strain. Using default strain. Warning: gnlti136478174 has no strain. Using default strain. Warning: gnlti136478175 has no strain. Using default strain. Warning: gnlti136478178 has no strain. Using default strain. Warning: gnlti136478179 has no strain. Using default strain. Warning: gnlti136478180 has no strain. Using default strain. Warning: gnlti136478181 has no strain. Using default strain. Warning: gnlti136478182 has no strain. Using default strain. Warning: gnlti136478183 has no strain. Using default strain. Warning: gnlti136478184 has no strain. Using default strain. Warning: gnlti136478186 has no strain. Using default strain. Warning: gnlti136478187 has no strain. Using default strain. Warning: gnlti136478188 has no strain. Using default strain. Warning: gnlti136478189 has no strain. Using default strain. Warning: gnlti136478190 has no strain. Using default strain. Warning: gnlti136478192 has no strain. Using default strain. Warning: gnlti136478193 has no strain. Using default strain. Warning: gnlti136478195 has no strain. Using default strain. Warning: gnlti136478196 has no strain. Using default strain. Warning: gnlti136478197 has no strain. Using default strain. Warning: gnlti136478198 has no strain. Using default strain. Warning: gnlti136478199 has no strain. Using default strain. Warning: gnlti136478202 has no strain. Using default strain. Warning: gnlti136478203 has no strain. Using default strain. Warning: gnlti136478204 has no strain. Using default strain. Warning: gnlti136478206 has no strain. Using default strain. Warning: gnlti136478207 has no strain. Using default strain. Warning: gnlti136478208 has no strain. Using default strain. Warning: gnlti136478209 has no strain. Using default strain. Warning: gnlti136478211 has no strain. Using default strain. Warning: gnlti136478213 has no strain. Using default strain. Warning: gnlti136478214 has no strain. Using default strain. Warning: gnlti136478216 has no strain. Using default strain. Warning: gnlti136478218 has no strain. Using default strain. Warning: gnlti136478221 has no strain. Using default strain. Warning: gnlti136478222 has no strain. Using default strain. Warning: gnlti136478223 has no strain. Using default strain. Warning: gnlti136478226 has no strain. Using default strain. Warning: gnlti136478227 has no strain. Using default strain. Warning: gnlti136478228 has no strain. Using default strain. Warning: gnlti136478229 has no strain. Using default strain. Warning: gnlti136478230 has no strain. Using default strain. Warning: gnlti136478231 has no strain. Using default strain. Warning: gnlti136478232 has no strain. Using default strain. Warning: gnlti136478233 has no strain. Using default strain. Warning: gnlti136478234 has no strain. Using default strain. Warning: gnlti136478237 has no strain. Using default strain. Warning: gnlti136478239 has no strain. Using default strain. Warning: gnlti136478240 has no strain. Using default strain. Warning: gnlti136478241 has no strain. Using default strain. Warning: gnlti136478244 has no strain. Using default strain. Warning: gnlti136478247 has no strain. Using default strain. Warning: gnlti136478249 has no strain. Using default strain. Warning: gnlti136478251 has no strain. Using default strain. Warning: gnlti136478252 has no strain. Using default strain. Warning: gnlti136478253 has no strain. Using default strain. Warning: gnlti136478254 has no strain. Using default strain. Warning: gnlti136478256 has no strain. Using default strain. Warning: gnlti136478258 has no strain. Using default strain. Warning: gnlti136478259 has no strain. Using default strain. Warning: gnlti136478260 has no strain. Using default strain. Warning: gnlti136478261 has no strain. Using default strain. Warning: gnlti136478262 has no strain. Using default strain. Warning: gnlti136478265 has no strain. Using default strain. Warning: gnlti136478266 has no strain. Using default strain. Warning: gnlti136478268 has no strain. Using default strain. Warning: gnlti136478269 has no strain. Using default strain. Warning: gnlti136478270 has no strain. Using default strain. Warning: gnlti136478271 has no strain. Using default strain. Warning: gnlti136478274 has no strain. Using default strain. Warning: gnlti136478275 has no strain. Using default strain. Warning: gnlti136478277 has no strain. Using default strain. Warning: gnlti136478280 has no strain. Using default strain. Warning: gnlti136478281 has no strain. Using default strain. Warning: gnlti136478282 has no strain. Using default strain. Warning: gnlti136478285 has no strain. Using default strain. Warning: gnlti136478288 has no strain. Using default strain. Warning: gnlti136478289 has no strain. Using default strain. Warning: gnlti136478293 has no strain. Using default strain. Warning: gnlti136478294 has no strain. Using default strain. Warning: gnlti136478295 has no strain. Using default strain. Warning: gnlti136478296 has no strain. Using default strain. Warning: gnlti136478297 has no strain. Using default strain. Warning: gnlti136478299 has no strain. Using default strain. Warning: gnlti136478300 has no strain. Using default strain. Warning: gnlti136478302 has no strain. Using default strain. Warning: gnlti136478303 has no strain. Using default strain. Warning: gnlti136478304 has no strain. Using default strain. Warning: gnlti136478305 has no strain. Using default strain. Warning: gnlti136478306 has no strain. Using default strain. Warning: gnlti136478307 has no strain. Using default strain. Warning: gnlti136478308 has no strain. Using default strain. Warning: gnlti136478309 has no strain. Using default strain. Warning: gnlti136478310 has no strain. Using default strain. Warning: gnlti136478315 has no strain. Using default strain. Warning: gnlti136478316 has no strain. Using default strain. Warning: gnlti136478317 has no strain. Using default strain. Warning: gnlti136478319 has no strain. Using default strain. Warning: gnlti136478320 has no strain. Using default strain. Warning: gnlti136478321 has no strain. Using default strain. Warning: gnlti136478322 has no strain. Using default strain. Warning: gnlti136478327 has no strain. Using default strain. Warning: gnlti136478329 has no strain. Using default strain. Warning: gnlti136478330 has no strain. Using default strain. Warning: gnlti136478331 has no strain. Using default strain. Warning: gnlti136478332 has no strain. Using default strain. Warning: gnlti136478333 has no strain. Using default strain. Warning: gnlti136478338 has no strain. Using default strain. Warning: gnlti136478339 has no strain. Using default strain. Warning: gnlti136478340 has no strain. Using default strain. Warning: gnlti136478342 has no strain. Using default strain. Warning: gnlti136478343 has no strain. Using default strain. Warning: gnlti136478344 has no strain. Using default strain. Warning: gnlti136478345 has no strain. Using default strain. Warning: gnlti136478346 has no strain. Using default strain. Warning: gnlti136478347 has no strain. Using default strain. Warning: gnlti136478348 has no strain. Using default strain. Warning: gnlti136478349 has no strain. Using default strain. Warning: gnlti136478351 has no strain. Using default strain. Warning: gnlti136478352 has no strain. Using default strain. Warning: gnlti136478355 has no strain. Using default strain. Warning: gnlti136478356 has no strain. Using default strain. Warning: gnlti136478357 has no strain. Using default strain. Warning: gnlti136478358 has no strain. Using default strain. Warning: gnlti136478359 has no strain. Using default strain. Warning: gnlti136478361 has no strain. Using default strain. Warning: gnlti136478362 has no strain. Using default strain. Warning: gnlti136478363 has no strain. Using default strain. Warning: gnlti136478364 has no strain. Using default strain. Warning: gnlti136478368 has no strain. Using default strain. Warning: gnlti136478369 has no strain. Using default strain. Warning: gnlti136478370 has no strain. Using default strain. Warning: gnlti136478371 has no strain. Using default strain. Warning: gnlti136478372 has no strain. Using default strain. Warning: gnlti136478376 has no strain. Using default strain. Warning: gnlti136478380 has no strain. Using default strain. Warning: gnlti136478381 has no strain. Using default strain. Warning: gnlti136478382 has no strain. Using default strain. Warning: gnlti136478383 has no strain. Using default strain. Warning: gnlti136478385 has no strain. Using default strain. Warning: gnlti136478386 has no strain. Using default strain. Warning: gnlti136478387 has no strain. Using default strain. Warning: gnlti136478388 has no strain. Using default strain. Warning: gnlti136478390 has no strain. Using default strain. Warning: gnlti136478392 has no strain. Using default strain. Warning: gnlti136478396 has no strain. Using default strain. Warning: gnlti136478397 has no strain. Using default strain. Warning: gnlti136478399 has no strain. Using default strain. Warning: gnlti136478401 has no strain. Using default strain. Warning: gnlti136478402 has no strain. Using default strain. Warning: gnlti136478404 has no strain. Using default strain. Warning: gnlti136478405 has no strain. Using default strain. Warning: gnlti136478407 has no strain. Using default strain. Warning: gnlti136478408 has no strain. Using default strain. Warning: gnlti136478409 has no strain. Using default strain. Warning: gnlti136478410 has no strain. Using default strain. Warning: gnlti136478411 has no strain. Using default strain. Warning: gnlti136478412 has no strain. Using default strain. Warning: gnlti136478415 has no strain. Using default strain. Warning: gnlti136478417 has no strain. Using default strain. Warning: gnlti136478418 has no strain. Using default strain. Warning: gnlti136478421 has no strain. Using default strain. Warning: gnlti136478422 has no strain. Using default strain. Warning: gnlti136478423 has no strain. Using default strain. Warning: gnlti136478424 has no strain. Using default strain. Warning: gnlti136478425 has no strain. Using default strain. Warning: gnlti136478426 has no strain. Using default strain. Warning: gnlti136478427 has no strain. Using default strain. Warning: gnlti136478428 has no strain. Using default strain. Warning: gnlti136478429 has no strain. Using default strain. Warning: gnlti136478430 has no strain. Using default strain. Warning: gnlti136478431 has no strain. Using default strain. Warning: gnlti136478435 has no strain. Using default strain. Warning: gnlti136478436 has no strain. Using default strain. Warning: gnlti136478439 has no strain. Using default strain. Warning: gnlti136478441 has no strain. Using default strain. Warning: gnlti136478442 has no strain. Using default strain. Warning: gnlti136478443 has no strain. Using default strain. Warning: gnlti136478444 has no strain. Using default strain. Warning: gnlti136478445 has no strain. Using default strain. Warning: gnlti136478446 has no strain. Using default strain. Warning: gnlti136478447 has no strain. Using default strain. Warning: gnlti136478448 has no strain. Using default strain. Warning: gnlti136478453 has no strain. Using default strain. Warning: gnlti136478456 has no strain. Using default strain. Warning: gnlti136478457 has no strain. Using default strain. Warning: gnlti136478458 has no strain. Using default strain. Warning: gnlti136478459 has no strain. Using default strain. Warning: gnlti136478462 has no strain. Using default strain. Warning: gnlti136478463 has no strain. Using default strain. Warning: gnlti136478464 has no strain. Using default strain. Warning: gnlti136478465 has no strain. Using default strain. Warning: gnlti136478467 has no strain. Using default strain. Warning: gnlti136478468 has no strain. Using default strain. Warning: gnlti136478469 has no strain. Using default strain. Warning: gnlti136478470 has no strain. Using default strain. Warning: gnlti136478471 has no strain. Using default strain. Warning: gnlti136478472 has no strain. Using default strain. Warning: gnlti136478474 has no strain. Using default strain. Warning: gnlti136478475 has no strain. Using default strain. Warning: gnlti136478476 has no strain. Using default strain. Warning: gnlti136478477 has no strain. Using default strain. Warning: gnlti136478478 has no strain. Using default strain. Warning: gnlti136478480 has no strain. Using default strain. Warning: gnlti136478484 has no strain. Using default strain. Warning: gnlti136478485 has no strain. Using default strain. Warning: gnlti136478486 has no strain. Using default strain. Warning: gnlti136478487 has no strain. Using default strain. Warning: gnlti136478488 has no strain. Using default strain. Warning: gnlti136478489 has no strain. Using default strain. Warning: gnlti136478490 has no strain. Using default strain. Warning: gnlti136478492 has no strain. Using default strain. Warning: gnlti136478493 has no strain. Using default strain. Warning: gnlti136478494 has no strain. Using default strain. Warning: gnlti136478495 has no strain. Using default strain. Warning: gnlti136478496 has no strain. Using default strain. Warning: gnlti136478498 has no strain. Using default strain. Warning: gnlti136478500 has no strain. Using default strain. Warning: gnlti136478501 has no strain. Using default strain. Warning: gnlti136478502 has no strain. Using default strain. Warning: gnlti136478503 has no strain. Using default strain. Warning: gnlti136478504 has no strain. Using default strain. Warning: gnlti136478506 has no strain. Using default strain. Warning: gnlti136478507 has no strain. Using default strain. Warning: gnlti136478509 has no strain. Using default strain. Warning: gnlti136478511 has no strain. Using default strain. Warning: gnlti136478513 has no strain. Using default strain. Warning: gnlti136478516 has no strain. Using default strain. Warning: gnlti136478518 has no strain. Using default strain. Warning: gnlti136478519 has no strain. Using default strain. Warning: gnlti136478520 has no strain. Using default strain. Warning: gnlti136478523 has no strain. Using default strain. Warning: gnlti136478524 has no strain. Using default strain. Warning: gnlti136478525 has no strain. Using default strain. Warning: gnlti136478527 has no strain. Using default strain. Warning: gnlti136478528 has no strain. Using default strain. Warning: gnlti136478533 has no strain. Using default strain. Warning: gnlti136478534 has no strain. Using default strain. Warning: gnlti136478536 has no strain. Using default strain. Warning: gnlti136478537 has no strain. Using default strain. Warning: gnlti136478538 has no strain. Using default strain. Warning: gnlti136478540 has no strain. Using default strain. Warning: gnlti136478543 has no strain. Using default strain. Warning: gnlti136478544 has no strain. Using default strain. Warning: gnlti136478545 has no strain. Using default strain. Warning: gnlti136478546 has no strain. Using default strain. Warning: gnlti136478547 has no strain. Using default strain. Warning: gnlti136478548 has no strain. Using default strain. Warning: gnlti136478549 has no strain. Using default strain. Warning: gnlti136478550 has no strain. Using default strain. Warning: gnlti136478551 has no strain. Using default strain. Warning: gnlti136478553 has no strain. Using default strain. Warning: gnlti136478554 has no strain. Using default strain. Warning: gnlti136478555 has no strain. Using default strain. Warning: gnlti136478557 has no strain. Using default strain. Warning: gnlti136478558 has no strain. Using default strain. Warning: gnlti136478559 has no strain. Using default strain. Warning: gnlti136478560 has no strain. Using default strain. Warning: gnlti136478561 has no strain. Using default strain. Warning: gnlti136478562 has no strain. Using default strain. Warning: gnlti136478563 has no strain. Using default strain. Warning: gnlti136478564 has no strain. Using default strain. Warning: gnlti136478566 has no strain. Using default strain. Warning: gnlti136478567 has no strain. Using default strain. Warning: gnlti136478568 has no strain. Using default strain. Warning: gnlti136478569 has no strain. Using default strain. Warning: gnlti136478570 has no strain. Using default strain. Warning: gnlti136478572 has no strain. Using default strain. Warning: gnlti136478573 has no strain. Using default strain. Warning: gnlti136478574 has no strain. Using default strain. Warning: gnlti136478577 has no strain. Using default strain. Warning: gnlti136478578 has no strain. Using default strain. Warning: gnlti136478580 has no strain. Using default strain. Warning: gnlti136478581 has no strain. Using default strain. Warning: gnlti136478582 has no strain. Using default strain. Warning: gnlti136478583 has no strain. Using default strain. Warning: gnlti136478585 has no strain. Using default strain. Warning: gnlti136478586 has no strain. Using default strain. Warning: gnlti136478587 has no strain. Using default strain. Warning: gnlti136478588 has no strain. Using default strain. Warning: gnlti136478591 has no strain. Using default strain. Warning: gnlti136478593 has no strain. Using default strain. Warning: gnlti136478594 has no strain. Using default strain. Warning: gnlti136478595 has no strain. Using default strain. Warning: gnlti136478596 has no strain. Using default strain. Warning: gnlti136478597 has no strain. Using default strain. Warning: gnlti136478598 has no strain. Using default strain. Warning: gnlti136478599 has no strain. Using default strain. Warning: gnlti136478601 has no strain. Using default strain. Warning: gnlti136478602 has no strain. Using default strain. Warning: gnlti136478603 has no strain. Using default strain. Warning: gnlti136478604 has no strain. Using default strain. Warning: gnlti136478606 has no strain. Using default strain. Warning: gnlti136478609 has no strain. Using default strain. Warning: gnlti136478610 has no strain. Using default strain. Warning: gnlti136478611 has no strain. Using default strain. Warning: gnlti136478612 has no strain. Using default strain. Warning: gnlti136478613 has no strain. Using default strain. Warning: gnlti136478614 has no strain. Using default strain. Warning: gnlti136478617 has no strain. Using default strain. Warning: gnlti136478618 has no strain. Using default strain. Warning: gnlti136478619 has no strain. Using default strain. Warning: gnlti136478620 has no strain. Using default strain. Warning: gnlti136478621 has no strain. Using default strain. Warning: gnlti136478622 has no strain. Using default strain. Warning: gnlti136478623 has no strain. Using default strain. Warning: gnlti136478625 has no strain. Using default strain. Warning: gnlti136478628 has no strain. Using default strain. Warning: gnlti136478629 has no strain. Using default strain. Warning: gnlti136478631 has no strain. Using default strain. Warning: gnlti136478632 has no strain. Using default strain. Warning: gnlti136478633 has no strain. Using default strain. Warning: gnlti136478634 has no strain. Using default strain. Warning: gnlti136478636 has no strain. Using default strain. Warning: gnlti136478639 has no strain. Using default strain. Warning: gnlti136478641 has no strain. Using default strain. Warning: gnlti136478642 has no strain. Using default strain. Warning: gnlti136478643 has no strain. Using default strain. Warning: gnlti136478645 has no strain. Using default strain. Warning: gnlti136478646 has no strain. Using default strain. Warning: gnlti136478649 has no strain. Using default strain. Warning: gnlti136478650 has no strain. Using default strain. Warning: gnlti136478651 has no strain. Using default strain. Warning: gnlti136478653 has no strain. Using default strain. Warning: gnlti136478654 has no strain. Using default strain. Warning: gnlti136478655 has no strain. Using default strain. Warning: gnlti136478656 has no strain. Using default strain. Warning: gnlti136478657 has no strain. Using default strain. Warning: gnlti136478658 has no strain. Using default strain. Warning: gnlti136478659 has no strain. Using default strain. Warning: gnlti136478660 has no strain. Using default strain. Warning: gnlti136478662 has no strain. Using default strain. Warning: gnlti136478664 has no strain. Using default strain. Warning: gnlti136478666 has no strain. Using default strain. Warning: gnlti136478669 has no strain. Using default strain. Warning: gnlti136478671 has no strain. Using default strain. Warning: gnlti136478672 has no strain. Using default strain. Warning: gnlti136478673 has no strain. Using default strain. Warning: gnlti136478674 has no strain. Using default strain. Warning: gnlti136478675 has no strain. Using default strain. Warning: gnlti136478676 has no strain. Using default strain. Warning: gnlti136478677 has no strain. Using default strain. Warning: gnlti136478679 has no strain. Using default strain. Warning: gnlti136478680 has no strain. Using default strain. Warning: gnlti136478681 has no strain. Using default strain. Warning: gnlti136478682 has no strain. Using default strain. Warning: gnlti136478685 has no strain. Using default strain. Warning: gnlti136478689 has no strain. Using default strain. Warning: gnlti136478690 has no strain. Using default strain. Warning: gnlti136478691 has no strain. Using default strain. Warning: gnlti136478692 has no strain. Using default strain. Warning: gnlti136478696 has no strain. Using default strain. Warning: gnlti136478698 has no strain. Using default strain. Warning: gnlti136478699 has no strain. Using default strain. Warning: gnlti136478701 has no strain. Using default strain. Warning: gnlti136478703 has no strain. Using default strain. Warning: gnlti136478704 has no strain. Using default strain. Warning: gnlti136478707 has no strain. Using default strain. Warning: gnlti136478709 has no strain. Using default strain. Warning: gnlti136478711 has no strain. Using default strain. Warning: gnlti136478712 has no strain. Using default strain. Warning: gnlti136478714 has no strain. Using default strain. Warning: gnlti136478715 has no strain. Using default strain. Warning: gnlti136478716 has no strain. Using default strain. Warning: gnlti136478718 has no strain. Using default strain. Warning: gnlti136478719 has no strain. Using default strain. Warning: gnlti136478721 has no strain. Using default strain. Warning: gnlti136478722 has no strain. Using default strain. Warning: gnlti136478724 has no strain. Using default strain. Warning: gnlti136478727 has no strain. Using default strain. Warning: gnlti136478729 has no strain. Using default strain. Warning: gnlti136478731 has no strain. Using default strain. Warning: gnlti136478732 has no strain. Using default strain. Warning: gnlti136478733 has no strain. Using default strain. Warning: gnlti136478734 has no strain. Using default strain. Warning: gnlti136478735 has no strain. Using default strain. Warning: gnlti136478737 has no strain. Using default strain. Warning: gnlti136478738 has no strain. Using default strain. Warning: gnlti136478740 has no strain. Using default strain. Warning: gnlti136478741 has no strain. Using default strain. Warning: gnlti136478742 has no strain. Using default strain. Warning: gnlti136478743 has no strain. Using default strain. Warning: gnlti136478744 has no strain. Using default strain. Warning: gnlti136478745 has no strain. Using default strain. Warning: gnlti136478746 has no strain. Using default strain. Warning: gnlti136478747 has no strain. Using default strain. Warning: gnlti136478748 has no strain. Using default strain. Warning: gnlti136478749 has no strain. Using default strain. Warning: gnlti136478750 has no strain. Using default strain. Warning: gnlti136478753 has no strain. Using default strain. Warning: gnlti136478754 has no strain. Using default strain. Warning: gnlti136478756 has no strain. Using default strain. Warning: gnlti136478758 has no strain. Using default strain. Warning: gnlti136478760 has no strain. Using default strain. Warning: gnlti136478761 has no strain. Using default strain. Warning: gnlti136478762 has no strain. Using default strain. Warning: gnlti136478763 has no strain. Using default strain. Warning: gnlti136478764 has no strain. Using default strain. Warning: gnlti136478765 has no strain. Using default strain. Warning: gnlti136478766 has no strain. Using default strain. Warning: gnlti136478767 has no strain. Using default strain. Warning: gnlti136478768 has no strain. Using default strain. Warning: gnlti136478769 has no strain. Using default strain. Warning: gnlti136478770 has no strain. Using default strain. Warning: gnlti136478772 has no strain. Using default strain. Warning: gnlti136478773 has no strain. Using default strain. Warning: gnlti136478774 has no strain. Using default strain. Warning: gnlti136478776 has no strain. Using default strain. Warning: gnlti136478777 has no strain. Using default strain. Warning: gnlti136478778 has no strain. Using default strain. Warning: gnlti136478779 has no strain. Using default strain. Warning: gnlti136478780 has no strain. Using default strain. Warning: gnlti136478781 has no strain. Using default strain. Warning: gnlti136478782 has no strain. Using default strain. Warning: gnlti136478783 has no strain. Using default strain. Warning: gnlti136478784 has no strain. Using default strain. Warning: gnlti136478786 has no strain. Using default strain. Warning: gnlti136478787 has no strain. Using default strain. Warning: gnlti136478788 has no strain. Using default strain. Warning: gnlti136478789 has no strain. Using default strain. Warning: gnlti136478790 has no strain. Using default strain. Warning: gnlti136478793 has no strain. Using default strain. Warning: gnlti136478795 has no strain. Using default strain. Warning: gnlti136478796 has no strain. Using default strain. Warning: gnlti136478797 has no strain. Using default strain. Warning: gnlti136478798 has no strain. Using default strain. Warning: gnlti136478799 has no strain. Using default strain. Warning: gnlti136478800 has no strain. Using default strain. Warning: gnlti136478803 has no strain. Using default strain. Warning: gnlti136478804 has no strain. Using default strain. Warning: gnlti136478806 has no strain. Using default strain. Warning: gnlti136478808 has no strain. Using default strain. Warning: gnlti136478810 has no strain. Using default strain. Warning: gnlti136478811 has no strain. Using default strain. Warning: gnlti136478812 has no strain. Using default strain. Warning: gnlti136478814 has no strain. Using default strain. Warning: gnlti136478817 has no strain. Using default strain. Warning: gnlti136478818 has no strain. Using default strain. Warning: gnlti136478820 has no strain. Using default strain. Warning: gnlti136478823 has no strain. Using default strain. Warning: gnlti136478824 has no strain. Using default strain. Warning: gnlti136478825 has no strain. Using default strain. Warning: gnlti136478826 has no strain. Using default strain. Warning: gnlti136478828 has no strain. Using default strain. Warning: gnlti136478829 has no strain. Using default strain. Warning: gnlti136478831 has no strain. Using default strain. Warning: gnlti136478832 has no strain. Using default strain. Warning: gnlti136478834 has no strain. Using default strain. Warning: gnlti136478835 has no strain. Using default strain. Warning: gnlti136478839 has no strain. Using default strain. Warning: gnlti136478841 has no strain. Using default strain. Warning: gnlti136478842 has no strain. Using default strain. Warning: gnlti136478845 has no strain. Using default strain. Warning: gnlti136478848 has no strain. Using default strain. Warning: gnlti136478850 has no strain. Using default strain. Warning: gnlti136478853 has no strain. Using default strain. Warning: gnlti136478854 has no strain. Using default strain. Warning: gnlti136478855 has no strain. Using default strain. Warning: gnlti136478857 has no strain. Using default strain. Warning: gnlti136478858 has no strain. Using default strain. Warning: gnlti136478859 has no strain. Using default strain. Warning: gnlti136478862 has no strain. Using default strain. Warning: gnlti136478865 has no strain. Using default strain. Warning: gnlti136478866 has no strain. Using default strain. Warning: gnlti136478867 has no strain. Using default strain. Warning: gnlti136478868 has no strain. Using default strain. Warning: gnlti136478869 has no strain. Using default strain. Warning: gnlti136478870 has no strain. Using default strain. Warning: gnlti136478871 has no strain. Using default strain. Warning: gnlti136478876 has no strain. Using default strain. Warning: gnlti136478877 has no strain. Using default strain. Warning: gnlti136478878 has no strain. Using default strain. Warning: gnlti136478879 has no strain. Using default strain. Warning: gnlti136478880 has no strain. Using default strain. Warning: gnlti136478881 has no strain. Using default strain. Warning: gnlti136478883 has no strain. Using default strain. Warning: gnlti136478885 has no strain. Using default strain. Warning: gnlti136478887 has no strain. Using default strain. Warning: gnlti136478888 has no strain. Using default strain. Warning: gnlti136478889 has no strain. Using default strain. Warning: gnlti136478891 has no strain. Using default strain. Warning: gnlti136478895 has no strain. Using default strain. Warning: gnlti136478896 has no strain. Using default strain. Warning: gnlti136478897 has no strain. Using default strain. Warning: gnlti136478898 has no strain. Using default strain. Warning: gnlti136478900 has no strain. Using default strain. Warning: gnlti136478902 has no strain. Using default strain. Warning: gnlti136478908 has no strain. Using default strain. Warning: gnlti136478909 has no strain. Using default strain. Warning: gnlti136478911 has no strain. Using default strain. Warning: gnlti136478912 has no strain. Using default strain. Warning: gnlti136478913 has no strain. Using default strain. Warning: gnlti136478914 has no strain. Using default strain. Warning: gnlti136478915 has no strain. Using default strain. Warning: gnlti136478917 has no strain. Using default strain. Warning: gnlti136478918 has no strain. Using default strain. Warning: gnlti136478920 has no strain. Using default strain. Warning: gnlti136478921 has no strain. Using default strain. Warning: gnlti136478922 has no strain. Using default strain. Warning: gnlti136478924 has no strain. Using default strain. Warning: gnlti136478927 has no strain. Using default strain. Warning: gnlti136478929 has no strain. Using default strain. Warning: gnlti136478930 has no strain. Using default strain. Warning: gnlti136478931 has no strain. Using default strain. Warning: gnlti136478932 has no strain. Using default strain. Warning: gnlti136478935 has no strain. Using default strain. Warning: gnlti136478936 has no strain. Using default strain. Warning: gnlti136478937 has no strain. Using default strain. Warning: gnlti136478938 has no strain. Using default strain. Warning: gnlti136478939 has no strain. Using default strain. Warning: gnlti136478942 has no strain. Using default strain. Warning: gnlti136478943 has no strain. Using default strain. Warning: gnlti136478945 has no strain. Using default strain. Warning: gnlti136478946 has no strain. Using default strain. Warning: gnlti136478947 has no strain. Using default strain. Warning: gnlti136478948 has no strain. Using default strain. Warning: gnlti136478949 has no strain. Using default strain. Warning: gnlti136478950 has no strain. Using default strain. Warning: gnlti136478951 has no strain. Using default strain. Warning: gnlti136478953 has no strain. Using default strain. Warning: gnlti136478954 has no strain. Using default strain. Warning: gnlti136478957 has no strain. Using default strain. Warning: gnlti136478958 has no strain. Using default strain. Warning: gnlti136478961 has no strain. Using default strain. Warning: gnlti136478962 has no strain. Using default strain. Warning: gnlti136478963 has no strain. Using default strain. Warning: gnlti136478964 has no strain. Using default strain. Warning: gnlti136478965 has no strain. Using default strain. Warning: gnlti136478966 has no strain. Using default strain. Warning: gnlti136478968 has no strain. Using default strain. Warning: gnlti136478969 has no strain. Using default strain. Warning: gnlti136478970 has no strain. Using default strain. Warning: gnlti136478971 has no strain. Using default strain. Warning: gnlti136478972 has no strain. Using default strain. Warning: gnlti136478973 has no strain. Using default strain. Warning: gnlti136478974 has no strain. Using default strain. Warning: gnlti136478975 has no strain. Using default strain. Warning: gnlti136478976 has no strain. Using default strain. Warning: gnlti136478977 has no strain. Using default strain. Warning: gnlti136478978 has no strain. Using default strain. Warning: gnlti136478979 has no strain. Using default strain. Warning: gnlti136478980 has no strain. Using default strain. Warning: gnlti136478983 has no strain. Using default strain. Warning: gnlti136478985 has no strain. Using default strain. Warning: gnlti136478986 has no strain. Using default strain. Warning: gnlti136478988 has no strain. Using default strain. Warning: gnlti136478991 has no strain. Using default strain. Warning: gnlti136478993 has no strain. Using default strain. Warning: gnlti136478994 has no strain. Using default strain. Warning: gnlti136478995 has no strain. Using default strain. Warning: gnlti136478996 has no strain. Using default strain. Warning: gnlti136478997 has no strain. Using default strain. Warning: gnlti136478998 has no strain. Using default strain. Warning: gnlti136478999 has no strain. Using default strain. Warning: gnlti136479000 has no strain. Using default strain. Warning: gnlti136479001 has no strain. Using default strain. Warning: gnlti136479002 has no strain. Using default strain. Warning: gnlti136479003 has no strain. Using default strain. Warning: gnlti136479005 has no strain. Using default strain. Warning: gnlti136479007 has no strain. Using default strain. Warning: gnlti136479008 has no strain. Using default strain. Warning: gnlti136479011 has no strain. Using default strain. Warning: gnlti136479012 has no strain. Using default strain. Warning: gnlti136479017 has no strain. Using default strain. Warning: gnlti136479019 has no strain. Using default strain. Warning: gnlti136479021 has no strain. Using default strain. Warning: gnlti136479023 has no strain. Using default strain. Warning: gnlti136479025 has no strain. Using default strain. Warning: gnlti136479026 has no strain. Using default strain. Warning: gnlti136479029 has no strain. Using default strain. Warning: gnlti136479031 has no strain. Using default strain. Warning: gnlti136479032 has no strain. Using default strain. Warning: gnlti136479037 has no strain. Using default strain. Warning: gnlti136479038 has no strain. Using default strain. Warning: gnlti136479041 has no strain. Using default strain. Warning: gnlti136479045 has no strain. Using default strain. Warning: gnlti136479047 has no strain. Using default strain. Warning: gnlti136479048 has no strain. Using default strain. Warning: gnlti136479049 has no strain. Using default strain. Warning: gnlti136479050 has no strain. Using default strain. Warning: gnlti136479052 has no strain. Using default strain. Warning: gnlti136479053 has no strain. Using default strain. Warning: gnlti136479054 has no strain. Using default strain. Warning: gnlti136479057 has no strain. Using default strain. Warning: gnlti136479061 has no strain. Using default strain. Warning: gnlti136479062 has no strain. Using default strain. Warning: gnlti136479068 has no strain. Using default strain. Warning: gnlti136479072 has no strain. Using default strain. Warning: gnlti136479075 has no strain. Using default strain. Warning: gnlti136479077 has no strain. Using default strain. Warning: gnlti136479078 has no strain. Using default strain. Warning: gnlti136479080 has no strain. Using default strain. Warning: gnlti136479082 has no strain. Using default strain. Warning: gnlti136479087 has no strain. Using default strain. Warning: gnlti136479089 has no strain. Using default strain. Warning: gnlti136479090 has no strain. Using default strain. Warning: gnlti136479091 has no strain. Using default strain. Warning: gnlti136479093 has no strain. Using default strain. Warning: gnlti136479095 has no strain. Using default strain. Warning: gnlti136479096 has no strain. Using default strain. Warning: gnlti136479098 has no strain. Using default strain. Warning: gnlti136479099 has no strain. Using default strain. Warning: gnlti136479100 has no strain. Using default strain. Warning: gnlti136479102 has no strain. Using default strain. Warning: gnlti136479106 has no strain. Using default strain. Warning: gnlti136479108 has no strain. Using default strain. Warning: gnlti136479109 has no strain. Using default strain. Warning: gnlti136479111 has no strain. Using default strain. Warning: gnlti136479112 has no strain. Using default strain. Warning: gnlti136479113 has no strain. Using default strain. Warning: gnlti136479114 has no strain. Using default strain. Warning: gnlti136479115 has no strain. Using default strain. Warning: gnlti136479116 has no strain. Using default strain. Warning: gnlti136479117 has no strain. Using default strain. Warning: gnlti136479118 has no strain. Using default strain. Warning: gnlti136479119 has no strain. Using default strain. Warning: gnlti136479120 has no strain. Using default strain. Warning: gnlti136479121 has no strain. Using default strain. Warning: gnlti136479122 has no strain. Using default strain. Warning: gnlti136479124 has no strain. Using default strain. Warning: gnlti136479125 has no strain. Using default strain. Warning: gnlti136479126 has no strain. Using default strain. Warning: gnlti136479128 has no strain. Using default strain. Warning: gnlti136479129 has no strain. Using default strain. Warning: gnlti136479130 has no strain. Using default strain. Warning: gnlti136479131 has no strain. Using default strain. Warning: gnlti136479132 has no strain. Using default strain. Warning: gnlti136479133 has no strain. Using default strain. Warning: gnlti136479134 has no strain. Using default strain. Warning: gnlti136479135 has no strain. Using default strain. Warning: gnlti136479136 has no strain. Using default strain. Warning: gnlti136479137 has no strain. Using default strain. Warning: gnlti136479138 has no strain. Using default strain. Warning: gnlti136479141 has no strain. Using default strain. Warning: gnlti136479142 has no strain. Using default strain. Warning: gnlti136479143 has no strain. Using default strain. Warning: gnlti136479146 has no strain. Using default strain. Warning: gnlti136479148 has no strain. Using default strain. Warning: gnlti136479149 has no strain. Using default strain. Warning: gnlti136479150 has no strain. Using default strain. Warning: gnlti136479153 has no strain. Using default strain. Warning: gnlti136479154 has no strain. Using default strain. Warning: gnlti136479155 has no strain. Using default strain. Warning: gnlti136479156 has no strain. Using default strain. Warning: gnlti136479158 has no strain. Using default strain. Warning: gnlti136479160 has no strain. Using default strain. Warning: gnlti136479163 has no strain. Using default strain. Warning: gnlti136479165 has no strain. Using default strain. Warning: gnlti136479167 has no strain. Using default strain. Warning: gnlti136479168 has no strain. Using default strain. Warning: gnlti136479170 has no strain. Using default strain. Warning: gnlti136479171 has no strain. Using default strain. Warning: gnlti136479175 has no strain. Using default strain. Warning: gnlti136479176 has no strain. Using default strain. Warning: gnlti136479177 has no strain. Using default strain. Warning: gnlti136479178 has no strain. Using default strain. Warning: gnlti136479179 has no strain. Using default strain. Warning: gnlti136479182 has no strain. Using default strain. Warning: gnlti136479183 has no strain. Using default strain. Warning: gnlti136479185 has no strain. Using default strain. Warning: gnlti136479186 has no strain. Using default strain. Warning: gnlti136479187 has no strain. Using default strain. Warning: gnlti136479189 has no strain. Using default strain. Warning: gnlti136479190 has no strain. Using default strain. Warning: gnlti136479191 has no strain. Using default strain. Warning: gnlti136479192 has no strain. Using default strain. Warning: gnlti136479193 has no strain. Using default strain. Warning: gnlti136479194 has no strain. Using default strain. Warning: gnlti136479195 has no strain. Using default strain. Warning: gnlti136479196 has no strain. Using default strain. Warning: gnlti136479197 has no strain. Using default strain. Warning: gnlti136479199 has no strain. Using default strain. Warning: gnlti136479200 has no strain. Using default strain. Warning: gnlti136479201 has no strain. Using default strain. Warning: gnlti136479204 has no strain. Using default strain. Warning: gnlti136479205 has no strain. Using default strain. Warning: gnlti136479207 has no strain. Using default strain. Warning: gnlti136479211 has no strain. Using default strain. Warning: gnlti136479212 has no strain. Using default strain. Warning: gnlti136479213 has no strain. Using default strain. Warning: gnlti136479214 has no strain. Using default strain. Warning: gnlti136479218 has no strain. Using default strain. Warning: gnlti136479219 has no strain. Using default strain. Warning: gnlti136479220 has no strain. Using default strain. Warning: gnlti136479224 has no strain. Using default strain. Warning: gnlti136479227 has no strain. Using default strain. Warning: gnlti136479228 has no strain. Using default strain. Warning: gnlti136479230 has no strain. Using default strain. Warning: gnlti136479231 has no strain. Using default strain. Warning: gnlti136479232 has no strain. Using default strain. Warning: gnlti136479234 has no strain. Using default strain. Warning: gnlti136479235 has no strain. Using default strain. Warning: gnlti136479236 has no strain. Using default strain. Warning: gnlti136479238 has no strain. Using default strain. Warning: gnlti136479239 has no strain. Using default strain. Warning: gnlti136479241 has no strain. Using default strain. Warning: gnlti136479244 has no strain. Using default strain. Warning: gnlti136479245 has no strain. Using default strain. Warning: gnlti136479246 has no strain. Using default strain. Warning: gnlti136479248 has no strain. Using default strain. Warning: gnlti136479249 has no strain. Using default strain. Warning: gnlti136479250 has no strain. Using default strain. Warning: gnlti136479251 has no strain. Using default strain. Warning: gnlti136479253 has no strain. Using default strain. Warning: gnlti136479254 has no strain. Using default strain. Warning: gnlti136479255 has no strain. Using default strain. Warning: gnlti136479260 has no strain. Using default strain. Warning: gnlti136479261 has no strain. Using default strain. Warning: gnlti136479263 has no strain. Using default strain. Warning: gnlti136479265 has no strain. Using default strain. Warning: gnlti136479269 has no strain. Using default strain. Warning: gnlti136479270 has no strain. Using default strain. Warning: gnlti136479271 has no strain. Using default strain. Warning: gnlti136479272 has no strain. Using default strain. Warning: gnlti136479275 has no strain. Using default strain. Warning: gnlti136479276 has no strain. Using default strain. Warning: gnlti136479277 has no strain. Using default strain. Warning: gnlti136479279 has no strain. Using default strain. Warning: gnlti136479281 has no strain. Using default strain. Warning: gnlti136479282 has no strain. Using default strain. Warning: gnlti136479283 has no strain. Using default strain. Warning: gnlti136479284 has no strain. Using default strain. Warning: gnlti136479288 has no strain. Using default strain. Warning: gnlti136479289 has no strain. Using default strain. Warning: gnlti136479290 has no strain. Using default strain. Warning: gnlti136479292 has no strain. Using default strain. Warning: gnlti136479294 has no strain. Using default strain. Warning: gnlti136479299 has no strain. Using default strain. Warning: gnlti136479300 has no strain. Using default strain. Warning: gnlti136479301 has no strain. Using default strain. Warning: gnlti136479303 has no strain. Using default strain. Warning: gnlti136479305 has no strain. Using default strain. Warning: gnlti136479306 has no strain. Using default strain. Warning: gnlti136479308 has no strain. Using default strain. Warning: gnlti136479310 has no strain. Using default strain. Warning: gnlti136479311 has no strain. Using default strain. Warning: gnlti136479312 has no strain. Using default strain. Warning: gnlti136479313 has no strain. Using default strain. Warning: gnlti136479314 has no strain. Using default strain. Warning: gnlti136479315 has no strain. Using default strain. Warning: gnlti136479316 has no strain. Using default strain. Warning: gnlti136479317 has no strain. Using default strain. Warning: gnlti136479319 has no strain. Using default strain. Warning: gnlti136479320 has no strain. Using default strain. Warning: gnlti136479321 has no strain. Using default strain. Warning: gnlti136479323 has no strain. Using default strain. Warning: gnlti136479324 has no strain. Using default strain. Warning: gnlti136479325 has no strain. Using default strain. Warning: gnlti136479326 has no strain. Using default strain. Warning: gnlti136479327 has no strain. Using default strain. Warning: gnlti136479328 has no strain. Using default strain. Warning: gnlti136479329 has no strain. Using default strain. Warning: gnlti136479330 has no strain. Using default strain. Warning: gnlti136479331 has no strain. Using default strain. Warning: gnlti136479333 has no strain. Using default strain. Warning: gnlti136479334 has no strain. Using default strain. Warning: gnlti136479335 has no strain. Using default strain. Warning: gnlti136479337 has no strain. Using default strain. Warning: gnlti136479338 has no strain. Using default strain. Warning: gnlti136479339 has no strain. Using default strain. Warning: gnlti136479340 has no strain. Using default strain. Warning: gnlti136479341 has no strain. Using default strain. Warning: gnlti136479347 has no strain. Using default strain. Warning: gnlti136479349 has no strain. Using default strain. Warning: gnlti136479350 has no strain. Using default strain. Warning: gnlti136479351 has no strain. Using default strain. Warning: gnlti136479352 has no strain. Using default strain. Warning: gnlti136479355 has no strain. Using default strain. Warning: gnlti136479358 has no strain. Using default strain. Warning: gnlti136479359 has no strain. Using default strain. Warning: gnlti136479360 has no strain. Using default strain. Warning: gnlti136479361 has no strain. Using default strain. Warning: gnlti136479362 has no strain. Using default strain. Warning: gnlti136479364 has no strain. Using default strain. Warning: gnlti136479366 has no strain. Using default strain. Warning: gnlti136479367 has no strain. Using default strain. Warning: gnlti136479368 has no strain. Using default strain. Warning: gnlti136479370 has no strain. Using default strain. Warning: gnlti136479371 has no strain. Using default strain. Warning: gnlti136479373 has no strain. Using default strain. Warning: gnlti136479374 has no strain. Using default strain. Warning: gnlti136479375 has no strain. Using default strain. Warning: gnlti136479377 has no strain. Using default strain. Warning: gnlti136479378 has no strain. Using default strain. Warning: gnlti136479380 has no strain. Using default strain. Warning: gnlti136479381 has no strain. Using default strain. Warning: gnlti136479382 has no strain. Using default strain. Warning: gnlti136479383 has no strain. Using default strain. Warning: gnlti136479384 has no strain. Using default strain. Warning: gnlti136479385 has no strain. Using default strain. Warning: gnlti136479390 has no strain. Using default strain. Warning: gnlti136479392 has no strain. Using default strain. Warning: gnlti136479393 has no strain. Using default strain. Warning: gnlti136479395 has no strain. Using default strain. Warning: gnlti136479396 has no strain. Using default strain. Warning: gnlti136479397 has no strain. Using default strain. Warning: gnlti136479398 has no strain. Using default strain. Warning: gnlti136479399 has no strain. Using default strain. Warning: gnlti136479401 has no strain. Using default strain. Warning: gnlti136479403 has no strain. Using default strain. Warning: gnlti136479404 has no strain. Using default strain. Warning: gnlti136479405 has no strain. Using default strain. Warning: gnlti136479408 has no strain. Using default strain. Warning: gnlti136479412 has no strain. Using default strain. Warning: gnlti136479415 has no strain. Using default strain. Warning: gnlti136479416 has no strain. Using default strain. Warning: gnlti136479417 has no strain. Using default strain. Warning: gnlti136479418 has no strain. Using default strain. Warning: gnlti136479419 has no strain. Using default strain. Warning: gnlti136479422 has no strain. Using default strain. Warning: gnlti136479423 has no strain. Using default strain. Warning: gnlti136479424 has no strain. Using default strain. Warning: gnlti136479426 has no strain. Using default strain. Warning: gnlti136479430 has no strain. Using default strain. Warning: gnlti136479431 has no strain. Using default strain. Warning: gnlti136479432 has no strain. Using default strain. Warning: gnlti136479433 has no strain. Using default strain. Warning: gnlti136479434 has no strain. Using default strain. Warning: gnlti136479438 has no strain. Using default strain. Warning: gnlti136479439 has no strain. Using default strain. Warning: gnlti136479440 has no strain. Using default strain. Warning: gnlti136479442 has no strain. Using default strain. Warning: gnlti136479443 has no strain. Using default strain. Warning: gnlti136479445 has no strain. Using default strain. Warning: gnlti136479446 has no strain. Using default strain. Warning: gnlti136479448 has no strain. Using default strain. Warning: gnlti136479449 has no strain. Using default strain. Warning: gnlti136479450 has no strain. Using default strain. Warning: gnlti136479451 has no strain. Using default strain. Warning: gnlti136479452 has no strain. Using default strain. Warning: gnlti136479453 has no strain. Using default strain. Warning: gnlti136479454 has no strain. Using default strain. Warning: gnlti136479456 has no strain. Using default strain. Warning: gnlti136479457 has no strain. Using default strain. Warning: gnlti136479458 has no strain. Using default strain. Warning: gnlti136479461 has no strain. Using default strain. Warning: gnlti136479462 has no strain. Using default strain. Warning: gnlti136479464 has no strain. Using default strain. Warning: gnlti136479465 has no strain. Using default strain. Warning: gnlti136479468 has no strain. Using default strain. Warning: gnlti136479469 has no strain. Using default strain. Warning: gnlti136479472 has no strain. Using default strain. Warning: gnlti136479473 has no strain. Using default strain. Warning: gnlti136479474 has no strain. Using default strain. Warning: gnlti136479475 has no strain. Using default strain. Warning: gnlti136479477 has no strain. Using default strain. Warning: gnlti136479481 has no strain. Using default strain. Warning: gnlti136479482 has no strain. Using default strain. Warning: gnlti136479483 has no strain. Using default strain. Warning: gnlti136479484 has no strain. Using default strain. Warning: gnlti136479485 has no strain. Using default strain. Warning: gnlti136479486 has no strain. Using default strain. Warning: gnlti136479487 has no strain. Using default strain. Warning: gnlti136479488 has no strain. Using default strain. Warning: gnlti136479491 has no strain. Using default strain. Warning: gnlti136479493 has no strain. Using default strain. Warning: gnlti136479494 has no strain. Using default strain. Warning: gnlti136479496 has no strain. Using default strain. Warning: gnlti136479497 has no strain. Using default strain. Warning: gnlti136479498 has no strain. Using default strain. Warning: gnlti136479502 has no strain. Using default strain. Warning: gnlti136479503 has no strain. Using default strain. Warning: gnlti136479504 has no strain. Using default strain. Warning: gnlti136479505 has no strain. Using default strain. Warning: gnlti136479508 has no strain. Using default strain. Warning: gnlti136479512 has no strain. Using default strain. Warning: gnlti136479513 has no strain. Using default strain. Warning: gnlti136479516 has no strain. Using default strain. Warning: gnlti136479517 has no strain. Using default strain. Warning: gnlti136479519 has no strain. Using default strain. Warning: gnlti136479521 has no strain. Using default strain. Warning: gnlti136479524 has no strain. Using default strain. Warning: gnlti136479527 has no strain. Using default strain. Warning: gnlti136479528 has no strain. Using default strain. Warning: gnlti136479529 has no strain. Using default strain. Warning: gnlti136479531 has no strain. Using default strain. Warning: gnlti136479533 has no strain. Using default strain. Warning: gnlti136479534 has no strain. Using default strain. Warning: gnlti136479538 has no strain. Using default strain. Warning: gnlti136479541 has no strain. Using default strain. Warning: gnlti136479543 has no strain. Using default strain. Warning: gnlti136479544 has no strain. Using default strain. Warning: gnlti136479546 has no strain. Using default strain. Warning: gnlti136479549 has no strain. Using default strain. Warning: gnlti136479550 has no strain. Using default strain. Warning: gnlti136479554 has no strain. Using default strain. Warning: gnlti136479555 has no strain. Using default strain. Warning: gnlti136479556 has no strain. Using default strain. Warning: gnlti136479557 has no strain. Using default strain. Warning: gnlti136479558 has no strain. Using default strain. Warning: gnlti136479559 has no strain. Using default strain. Warning: gnlti136479560 has no strain. Using default strain. Warning: gnlti136479561 has no strain. Using default strain. Warning: gnlti136479562 has no strain. Using default strain. Warning: gnlti136479563 has no strain. Using default strain. Warning: gnlti136479564 has no strain. Using default strain. Warning: gnlti136479567 has no strain. Using default strain. Warning: gnlti136479569 has no strain. Using default strain. Warning: gnlti136479570 has no strain. Using default strain. Warning: gnlti136479571 has no strain. Using default strain. Warning: gnlti136479572 has no strain. Using default strain. Warning: gnlti136479575 has no strain. Using default strain. Warning: gnlti136479577 has no strain. Using default strain. Warning: gnlti136479578 has no strain. Using default strain. Warning: gnlti136479579 has no strain. Using default strain. Warning: gnlti136479580 has no strain. Using default strain. Warning: gnlti136479581 has no strain. Using default strain. Warning: gnlti136479582 has no strain. Using default strain. Warning: gnlti136479583 has no strain. Using default strain. Warning: gnlti136479584 has no strain. Using default strain. Warning: gnlti136479585 has no strain. Using default strain. Warning: gnlti136479586 has no strain. Using default strain. Warning: gnlti136479589 has no strain. Using default strain. Warning: gnlti136479590 has no strain. Using default strain. Warning: gnlti136479592 has no strain. Using default strain. Warning: gnlti136479596 has no strain. Using default strain. Warning: gnlti136479597 has no strain. Using default strain. Warning: gnlti136479598 has no strain. Using default strain. Warning: gnlti136479599 has no strain. Using default strain. Warning: gnlti136479600 has no strain. Using default strain. Warning: gnlti136479602 has no strain. Using default strain. Warning: gnlti136479603 has no strain. Using default strain. Warning: gnlti136479604 has no strain. Using default strain. Warning: gnlti136479605 has no strain. Using default strain. Warning: gnlti136479606 has no strain. Using default strain. Warning: gnlti136479607 has no strain. Using default strain. Warning: gnlti136479608 has no strain. Using default strain. Warning: gnlti136479610 has no strain. Using default strain. Warning: gnlti136479611 has no strain. Using default strain. Warning: gnlti136479612 has no strain. Using default strain. Warning: gnlti136479613 has no strain. Using default strain. Warning: gnlti136479615 has no strain. Using default strain. Warning: gnlti136479616 has no strain. Using default strain. Warning: gnlti136479617 has no strain. Using default strain. Warning: gnlti136479618 has no strain. Using default strain. Warning: gnlti136479619 has no strain. Using default strain. Warning: gnlti136479620 has no strain. Using default strain. Warning: gnlti136479622 has no strain. Using default strain. Warning: gnlti136479623 has no strain. Using default strain. Warning: gnlti136479624 has no strain. Using default strain. Warning: gnlti136479625 has no strain. Using default strain. Warning: gnlti136479628 has no strain. Using default strain. Warning: gnlti136479632 has no strain. Using default strain. Warning: gnlti136479634 has no strain. Using default strain. Warning: gnlti136479635 has no strain. Using default strain. Warning: gnlti136479638 has no strain. Using default strain. Warning: gnlti136479639 has no strain. Using default strain. Warning: gnlti136479640 has no strain. Using default strain. Warning: gnlti136479641 has no strain. Using default strain. Warning: gnlti136479647 has no strain. Using default strain. Warning: gnlti136479649 has no strain. Using default strain. Warning: gnlti136479650 has no strain. Using default strain. Warning: gnlti136479652 has no strain. Using default strain. Warning: gnlti136479653 has no strain. Using default strain. Warning: gnlti136479654 has no strain. Using default strain. Warning: gnlti136479655 has no strain. Using default strain. Warning: gnlti136479656 has no strain. Using default strain. Warning: gnlti136479657 has no strain. Using default strain. Warning: gnlti136479660 has no strain. Using default strain. Warning: gnlti136479661 has no strain. Using default strain. Warning: gnlti136479662 has no strain. Using default strain. Warning: gnlti136479663 has no strain. Using default strain. Warning: gnlti136479664 has no strain. Using default strain. Warning: gnlti136479665 has no strain. Using default strain. Warning: gnlti136479667 has no strain. Using default strain. Warning: gnlti136479668 has no strain. Using default strain. Warning: gnlti136479670 has no strain. Using default strain. Warning: gnlti136479672 has no strain. Using default strain. Warning: gnlti136479673 has no strain. Using default strain. Warning: gnlti136479674 has no strain. Using default strain. Warning: gnlti136479675 has no strain. Using default strain. Warning: gnlti136479676 has no strain. Using default strain. Warning: gnlti136479678 has no strain. Using default strain. Warning: gnlti136479681 has no strain. Using default strain. Warning: gnlti136479682 has no strain. Using default strain. Warning: gnlti136479683 has no strain. Using default strain. Warning: gnlti136479684 has no strain. Using default strain. Warning: gnlti136479685 has no strain. Using default strain. Warning: gnlti136479686 has no strain. Using default strain. Warning: gnlti136479687 has no strain. Using default strain. Warning: gnlti136479688 has no strain. Using default strain. Warning: gnlti136479689 has no strain. Using default strain. Warning: gnlti136479690 has no strain. Using default strain. Warning: gnlti136479691 has no strain. Using default strain. Warning: gnlti136479694 has no strain. Using default strain. Warning: gnlti136479696 has no strain. Using default strain. Warning: gnlti136479697 has no strain. Using default strain. Warning: gnlti136479700 has no strain. Using default strain. Warning: gnlti136479703 has no strain. Using default strain. Warning: gnlti136479704 has no strain. Using default strain. Warning: gnlti136479706 has no strain. Using default strain. Warning: gnlti136479707 has no strain. Using default strain. Warning: gnlti136479709 has no strain. Using default strain. Warning: gnlti136479710 has no strain. Using default strain. Warning: gnlti136479711 has no strain. Using default strain. Warning: gnlti136479712 has no strain. Using default strain. Warning: gnlti136479713 has no strain. Using default strain. Warning: gnlti136479714 has no strain. Using default strain. Warning: gnlti136479715 has no strain. Using default strain. Warning: gnlti136479717 has no strain. Using default strain. Warning: gnlti136479718 has no strain. Using default strain. Warning: gnlti136479719 has no strain. Using default strain. Warning: gnlti136479720 has no strain. Using default strain. Warning: gnlti136479722 has no strain. Using default strain. Warning: gnlti136479727 has no strain. Using default strain. Warning: gnlti136479728 has no strain. Using default strain. Warning: gnlti136479732 has no strain. Using default strain. Warning: gnlti136479735 has no strain. Using default strain. Warning: gnlti136479736 has no strain. Using default strain. Warning: gnlti136479737 has no strain. Using default strain. Warning: gnlti136479738 has no strain. Using default strain. Warning: gnlti136479739 has no strain. Using default strain. Warning: gnlti136479740 has no strain. Using default strain. Warning: gnlti136479741 has no strain. Using default strain. Warning: gnlti136479743 has no strain. Using default strain. Warning: gnlti136479744 has no strain. Using default strain. Warning: gnlti136479745 has no strain. Using default strain. Warning: gnlti136479746 has no strain. Using default strain. Warning: gnlti136479747 has no strain. Using default strain. Warning: gnlti136479749 has no strain. Using default strain. Warning: gnlti136479750 has no strain. Using default strain. Warning: gnlti136479752 has no strain. Using default strain. Warning: gnlti136479753 has no strain. Using default strain. Warning: gnlti136479754 has no strain. Using default strain. Warning: gnlti136479755 has no strain. Using default strain. Warning: gnlti136479756 has no strain. Using default strain. Warning: gnlti136479758 has no strain. Using default strain. Warning: gnlti136479759 has no strain. Using default strain. Warning: gnlti136479761 has no strain. Using default strain. Warning: gnlti136479762 has no strain. Using default strain. Warning: gnlti136479763 has no strain. Using default strain. Warning: gnlti136479765 has no strain. Using default strain. Warning: gnlti136479767 has no strain. Using default strain. Warning: gnlti136479768 has no strain. Using default strain. Warning: gnlti136479770 has no strain. Using default strain. Warning: gnlti136479773 has no strain. Using default strain. Warning: gnlti136479774 has no strain. Using default strain. Warning: gnlti136479776 has no strain. Using default strain. Warning: gnlti136479780 has no strain. Using default strain. Warning: gnlti136479782 has no strain. Using default strain. Warning: gnlti136479785 has no strain. Using default strain. Warning: gnlti136479786 has no strain. Using default strain. Warning: gnlti136479787 has no strain. Using default strain. Warning: gnlti136479789 has no strain. Using default strain. Warning: gnlti136479790 has no strain. Using default strain. Warning: gnlti136479794 has no strain. Using default strain. Warning: gnlti136479795 has no strain. Using default strain. Warning: gnlti136479799 has no strain. Using default strain. Warning: gnlti136479800 has no strain. Using default strain. Warning: gnlti136479802 has no strain. Using default strain. Warning: gnlti136479803 has no strain. Using default strain. Warning: gnlti136479804 has no strain. Using default strain. Warning: gnlti136479805 has no strain. Using default strain. Warning: gnlti136479806 has no strain. Using default strain. Warning: gnlti136479807 has no strain. Using default strain. Warning: gnlti136479808 has no strain. Using default strain. Warning: gnlti136479809 has no strain. Using default strain. Warning: gnlti136479812 has no strain. Using default strain. Warning: gnlti136479813 has no strain. Using default strain. Warning: gnlti136479814 has no strain. Using default strain. Warning: gnlti136479816 has no strain. Using default strain. Warning: gnlti136479817 has no strain. Using default strain. Warning: gnlti136479822 has no strain. Using default strain. Warning: gnlti136479824 has no strain. Using default strain. Warning: gnlti136479825 has no strain. Using default strain. Warning: gnlti136479826 has no strain. Using default strain. Warning: gnlti136479830 has no strain. Using default strain. Warning: gnlti136479832 has no strain. Using default strain. Warning: gnlti136479834 has no strain. Using default strain. Warning: gnlti136479835 has no strain. Using default strain. Warning: gnlti136479836 has no strain. Using default strain. Warning: gnlti136479839 has no strain. Using default strain. Warning: gnlti136479840 has no strain. Using default strain. Warning: gnlti136479841 has no strain. Using default strain. Warning: gnlti136479843 has no strain. Using default strain. Warning: gnlti136479844 has no strain. Using default strain. Warning: gnlti136479847 has no strain. Using default strain. Warning: gnlti136479852 has no strain. Using default strain. Warning: gnlti136479855 has no strain. Using default strain. Warning: gnlti136479856 has no strain. Using default strain. Warning: gnlti136479857 has no strain. Using default strain. Warning: gnlti136479858 has no strain. Using default strain. Warning: gnlti136479859 has no strain. Using default strain. Warning: gnlti136479861 has no strain. Using default strain. Warning: gnlti136479863 has no strain. Using default strain. Warning: gnlti136479864 has no strain. Using default strain. Warning: gnlti136479866 has no strain. Using default strain. Warning: gnlti136479867 has no strain. Using default strain. Warning: gnlti136479868 has no strain. Using default strain. Warning: gnlti136479869 has no strain. Using default strain. Warning: gnlti136479870 has no strain. Using default strain. Warning: gnlti136479871 has no strain. Using default strain. Warning: gnlti136479872 has no strain. Using default strain. Warning: gnlti136479874 has no strain. Using default strain. Warning: gnlti136479875 has no strain. Using default strain. Warning: gnlti136479876 has no strain. Using default strain. Warning: gnlti136479877 has no strain. Using default strain. Warning: gnlti136479878 has no strain. Using default strain. Warning: gnlti136479879 has no strain. Using default strain. Warning: gnlti136479881 has no strain. Using default strain. Warning: gnlti136479883 has no strain. Using default strain. Warning: gnlti136479885 has no strain. Using default strain. Warning: gnlti136479886 has no strain. Using default strain. Warning: gnlti136479887 has no strain. Using default strain. Warning: gnlti136479888 has no strain. Using default strain. Warning: gnlti136479889 has no strain. Using default strain. Starting minimum left vector clip ... done. Pool has 1595 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 1595 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 550 reads have not enough good bases for assembly. - 1045 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 393 Localtime: Thu Jul 15 12:00:00 2010 Generated 1595 unique template ids for 1595 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 1595 reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 3190 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 1594 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 718 possible: 171169 permbans: 0 Hits chosen: 718 Localtime: Thu Jul 15 12:00:00 2010 Pre-assembly alignment search for read extension and / or vector clipping: Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Pre-assembly vector clipping Performing vector clipping ... done. Pool has 1595 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 1595 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 550 reads have not enough good bases for assembly. - 1045 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 393 Localtime: Thu Jul 15 12:00:00 2010 Generated 1595 unique template ids for 1595 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Generated 0 unique strain ids for 1595 reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 3190 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 1594 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 718 possible: 171169 permbans: 0 Hits chosen: 718 Localtime: Thu Jul 15 12:00:00 2010 Pass: 1 Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Calculating possible vector leftovers ... done. Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1045 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 75 T: 106 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 370 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 2 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1044 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 2 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 148 C: 96 G: 59 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 3 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1043 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 3 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 130 C: 119 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 4 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1042 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 4 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 67 C: 90 G: 80 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 5 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1041 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 5 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 94 G: 66 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 339 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 6 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1040 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 6 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 132 C: 108 G: 140 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 530 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 7 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1039 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 7 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 129 C: 71 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 8 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1038 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 8 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 37 C: 24 G: 32 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 9 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1037 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 9 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 99 C: 139 G: 95 T: 176 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 509 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 10 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1036 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 10 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 101 C: 127 G: 129 T: 113 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 470 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 11 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1035 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 11 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 68 C: 70 G: 67 T: 77 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 282 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 12 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1034 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 12 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 156 C: 118 G: 136 T: 134 N: 7 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 544 bases, 7 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 13 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1033 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 13 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 103 C: 100 G: 66 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 393 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 14 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1032 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 14 Contig length: 362 Avg. contig coverage: 1 Consensus contains: A: 92 C: 88 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 362 Reads contain 362 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 15 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1031 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 15 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 106 C: 140 G: 97 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 464 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 16 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1030 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 16 Contig length: 265 Avg. contig coverage: 1 Consensus contains: A: 81 C: 46 G: 64 T: 73 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 265 Reads contain 264 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 17 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1029 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 17 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 122 C: 116 G: 114 T: 148 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 500 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 18 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1028 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 18 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 152 C: 98 G: 70 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 19 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1027 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 19 Contig length: 275 Avg. contig coverage: 1 Consensus contains: A: 61 C: 60 G: 53 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 275 Reads contain 275 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 20 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1026 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 20 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 79 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 21 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1025 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 21 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 161 C: 138 G: 126 T: 162 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 587 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 22 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1024 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 22 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 122 C: 55 G: 35 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 309 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 23 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1023 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 23 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 155 C: 139 G: 101 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 558 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 24 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1022 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 24 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 114 C: 98 G: 118 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 25 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1021 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 25 Contig length: 508 Avg. contig coverage: 1 Consensus contains: A: 140 C: 109 G: 134 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 508 Reads contain 507 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 26 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1020 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 26 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 167 C: 162 G: 94 T: 159 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 582 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 27 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1019 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 27 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 95 C: 92 G: 67 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 28 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1018 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 28 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 56 C: 67 G: 50 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 298 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 29 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1017 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 29 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 124 C: 100 G: 120 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 452 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 30 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1016 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 30 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 128 C: 124 G: 160 T: 116 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 528 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 31 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1015 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 31 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 140 C: 137 G: 99 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 32 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1014 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 32 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 159 C: 159 G: 127 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 576 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 33 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1013 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 33 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 141 C: 89 G: 85 T: 128 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 443 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 34 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1012 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 34 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 59 C: 65 G: 67 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 35 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1011 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 35 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 148 C: 100 G: 128 T: 153 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 36 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1010 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 36 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 138 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 427 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 37 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1009 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 37 Contig length: 555 Avg. contig coverage: 1 Consensus contains: A: 131 C: 160 G: 95 T: 161 N: 8 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 555 Reads contain 547 bases, 8 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 38 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1008 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 38 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 129 C: 103 G: 123 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 39 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1007 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 39 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 123 C: 86 G: 64 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 40 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1006 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 40 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 116 C: 108 G: 56 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 41 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1005 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 41 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 165 C: 137 G: 116 T: 155 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 573 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 42 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1004 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 42 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 119 C: 113 G: 96 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 43 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1003 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 43 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 105 C: 77 G: 74 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 44 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1002 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 44 Contig length: 621 Avg. contig coverage: 1 Consensus contains: A: 162 C: 140 G: 167 T: 148 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 621 Reads contain 617 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 45 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1001 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 45 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 137 C: 121 G: 147 T: 128 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 533 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 46 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1000 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 46 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 108 C: 104 G: 134 T: 103 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 449 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 47 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 999 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 47 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 119 C: 66 G: 53 T: 82 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 320 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 48 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 998 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 48 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 87 C: 87 G: 131 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 49 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 997 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 49 Contig length: 589 Avg. contig coverage: 1 Consensus contains: A: 157 C: 127 G: 164 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 589 Reads contain 589 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 50 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 996 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 50 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 119 C: 120 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 51 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 995 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 51 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 67 C: 58 G: 85 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 52 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 994 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 52 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 76 C: 57 G: 25 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 53 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 993 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 53 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 52 C: 52 G: 35 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 54 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 992 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 54 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 62 C: 26 G: 29 T: 38 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 55 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 991 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 55 Contig length: 166 Avg. contig coverage: 1 Consensus contains: A: 23 C: 38 G: 47 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 166 Reads contain 166 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 56 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 990 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 56 Contig length: 217 Avg. contig coverage: 1 Consensus contains: A: 57 C: 44 G: 54 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 217 Reads contain 217 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 57 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 989 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 57 Contig length: 163 Avg. contig coverage: 1 Consensus contains: A: 68 C: 27 G: 23 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 163 Reads contain 163 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 58 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 988 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 58 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 83 C: 41 G: 36 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 59 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 987 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 59 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 102 C: 59 G: 99 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 60 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 986 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 60 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 70 C: 51 G: 42 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 61 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 985 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 61 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 30 C: 40 G: 53 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 62 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 984 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 62 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 56 C: 18 G: 17 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 63 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 983 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 63 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 86 C: 43 G: 27 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 64 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 982 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 64 Contig length: 120 Avg. contig coverage: 1 Consensus contains: A: 47 C: 22 G: 11 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 120 Reads contain 120 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 65 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 981 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 65 Contig length: 199 Avg. contig coverage: 1 Consensus contains: A: 81 C: 38 G: 26 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 199 Reads contain 199 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 66 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 980 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 66 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 151 C: 117 G: 135 T: 162 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 565 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 67 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 979 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 67 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 104 C: 76 G: 102 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 68 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 978 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 68 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 67 G: 101 T: 87 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 346 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 69 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 977 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 69 Contig length: 139 Avg. contig coverage: 1 Consensus contains: A: 29 C: 36 G: 34 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 139 Reads contain 139 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 70 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 976 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 70 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 48 C: 45 G: 6 T: 58 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 157 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 71 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 975 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 71 Contig length: 129 Avg. contig coverage: 1 Consensus contains: A: 39 C: 34 G: 19 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 129 Reads contain 129 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 72 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 974 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 72 Contig length: 226 Avg. contig coverage: 1 Consensus contains: A: 61 C: 48 G: 64 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 226 Reads contain 226 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 73 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 973 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 73 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 90 C: 66 G: 103 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 74 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 972 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 74 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 131 C: 99 G: 51 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 75 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 971 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 75 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 91 T: 96 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 76 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 970 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 76 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 58 C: 43 G: 57 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 77 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 969 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 77 Contig length: 146 Avg. contig coverage: 1 Consensus contains: A: 51 C: 24 G: 32 T: 39 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 146 Reads contain 146 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 78 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 968 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 78 Contig length: 209 Avg. contig coverage: 1 Consensus contains: A: 49 C: 47 G: 47 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 209 Reads contain 208 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 79 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 967 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 79 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 147 C: 94 G: 66 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 80 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 966 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 80 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 157 C: 83 G: 71 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 81 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 965 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 81 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 132 C: 97 G: 110 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 446 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 82 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 964 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 82 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 118 G: 85 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 83 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 963 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 83 Contig length: 308 Avg. contig coverage: 1 Consensus contains: A: 122 C: 67 G: 49 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 308 Reads contain 308 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 84 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 962 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 84 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 22 C: 40 G: 45 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 85 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 961 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 85 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 18 T: 17 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 86 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 960 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 86 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 130 C: 71 G: 99 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 87 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 959 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 87 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 124 C: 76 G: 121 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 88 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 958 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 88 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 119 C: 105 G: 123 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 89 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 957 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 89 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 78 C: 98 G: 86 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 90 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 956 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 90 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 141 C: 80 G: 63 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 91 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 955 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 91 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 79 C: 76 G: 75 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 92 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 954 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 92 Contig length: 286 Avg. contig coverage: 1 Consensus contains: A: 107 C: 61 G: 38 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 286 Reads contain 286 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 93 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 953 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 93 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 50 C: 34 G: 34 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 94 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 952 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 94 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 132 C: 128 G: 124 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 522 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 95 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 951 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 95 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 111 C: 97 G: 121 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 96 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 950 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 96 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 99 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 97 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 949 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 97 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 53 G: 68 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 98 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 948 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 98 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 165 C: 105 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 99 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 947 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 99 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 67 C: 55 G: 53 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 946 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 100 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 91 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 945 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 101 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 45 C: 50 G: 59 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 944 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 102 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 109 C: 120 G: 90 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 943 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 103 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 82 C: 79 G: 72 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 942 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 104 Contig length: 248 Avg. contig coverage: 1 Consensus contains: A: 54 C: 83 G: 53 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 248 Reads contain 248 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 941 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 105 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 127 C: 94 G: 95 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 940 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 106 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 143 C: 85 G: 55 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 939 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 107 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 94 C: 88 G: 78 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 938 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 108 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 62 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 937 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 109 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 114 C: 151 G: 92 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 936 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 110 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 94 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 935 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 111 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 111 C: 125 G: 104 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 934 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 112 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 143 C: 113 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 933 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 113 Contig length: 572 Avg. contig coverage: 1 Consensus contains: A: 152 C: 134 G: 115 T: 171 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 572 Reads contain 572 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 932 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 114 Contig length: 571 Avg. contig coverage: 1 Consensus contains: A: 149 C: 126 G: 139 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 571 Reads contain 571 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 931 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 115 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 64 C: 59 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 930 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 116 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 164 C: 158 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 929 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 117 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 62 C: 106 G: 68 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 928 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 118 Contig length: 145 Avg. contig coverage: 1 Consensus contains: A: 33 C: 24 G: 48 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 145 Reads contain 145 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 927 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 119 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 139 C: 126 G: 108 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 926 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 120 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 124 C: 58 G: 57 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 925 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 121 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 75 C: 65 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 924 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 122 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 29 G: 27 T: 34 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 923 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 123 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 139 C: 115 G: 101 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 922 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 124 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 151 C: 121 G: 132 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 921 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 125 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 98 C: 37 G: 13 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 920 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 126 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 99 C: 131 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 919 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 127 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 140 C: 84 G: 75 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 918 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 128 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 146 C: 116 G: 119 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 917 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 129 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 95 C: 124 G: 70 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 916 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 130 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 102 C: 31 G: 35 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 915 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 131 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 106 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 914 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 132 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 163 C: 108 G: 66 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 913 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 133 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 159 C: 111 G: 128 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 533 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 912 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 134 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 139 C: 97 G: 59 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 911 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 135 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 77 C: 83 G: 67 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 910 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 136 Contig length: 97 Avg. contig coverage: 1 Consensus contains: A: 22 C: 17 G: 37 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 97 Reads contain 97 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 909 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 137 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 135 C: 97 G: 140 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 908 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 138 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 131 C: 86 G: 48 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 907 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 139 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 97 C: 77 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 906 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 140 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 76 C: 97 G: 106 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 905 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 141 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 157 C: 138 G: 114 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 904 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 142 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 113 C: 100 G: 118 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 903 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 143 Contig length: 215 Avg. contig coverage: 1 Consensus contains: A: 48 C: 65 G: 51 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 215 Reads contain 215 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 902 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 144 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 98 C: 115 G: 82 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 901 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 145 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 34 C: 17 G: 16 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 900 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 146 Contig length: 112 Avg. contig coverage: 1 Consensus contains: A: 20 C: 18 G: 43 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 112 Reads contain 112 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 899 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 147 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 38 C: 79 G: 77 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 898 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 148 Contig length: 221 Avg. contig coverage: 1 Consensus contains: A: 62 C: 57 G: 62 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 221 Reads contain 221 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 897 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 149 Contig length: 204 Avg. contig coverage: 1 Consensus contains: A: 36 C: 64 G: 62 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 204 Reads contain 204 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 896 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 150 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 98 G: 65 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 895 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 151 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 87 C: 65 G: 57 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 894 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 152 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 58 C: 39 G: 80 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 893 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 153 Contig length: 276 Avg. contig coverage: 1 Consensus contains: A: 66 C: 56 G: 76 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 276 Reads contain 276 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 892 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 154 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 169 C: 110 G: 79 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 891 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 155 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 114 C: 168 G: 101 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 890 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 156 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 145 C: 118 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 889 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 157 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 144 C: 133 G: 104 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 888 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 158 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 152 C: 76 G: 129 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 887 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 159 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 151 C: 129 G: 179 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 886 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 160 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 146 C: 92 G: 117 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 885 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 161 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 84 C: 36 G: 19 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 884 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 162 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 167 C: 102 G: 137 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 883 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 163 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 107 C: 80 G: 99 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 882 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 164 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 160 C: 110 G: 89 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 881 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 165 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 146 C: 85 G: 95 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 880 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 166 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 177 C: 120 G: 121 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 568 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 879 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 167 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 117 C: 135 G: 97 T: 152 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 878 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 168 Contig length: 470 Avg. contig coverage: 1 Consensus contains: A: 134 C: 92 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 470 Reads contain 470 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 877 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 169 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 82 C: 70 G: 92 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 876 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 170 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 153 C: 125 G: 123 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 875 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 171 Contig length: 657 Avg. contig coverage: 1 Consensus contains: A: 171 C: 161 G: 107 T: 218 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 657 Reads contain 657 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 874 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 172 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 145 C: 131 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 873 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 173 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 155 C: 131 G: 156 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 872 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 174 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 110 C: 104 G: 125 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 871 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 175 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 170 C: 116 G: 91 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 870 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 176 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 146 C: 99 G: 114 T: 192 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 869 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 177 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 106 T: 146 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 488 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 868 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 178 Contig length: 254 Avg. contig coverage: 1 Consensus contains: A: 104 C: 44 G: 35 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 254 Reads contain 254 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 867 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 179 Contig length: 612 Avg. contig coverage: 1 Consensus contains: A: 147 C: 129 G: 155 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 612 Reads contain 610 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 866 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 180 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 47 C: 27 G: 54 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 865 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 181 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 132 C: 91 G: 108 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 864 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 182 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 121 C: 133 G: 119 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 863 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 183 Contig length: 579 Avg. contig coverage: 1 Consensus contains: A: 124 C: 141 G: 124 T: 190 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 579 Reads contain 579 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 862 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 184 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 120 C: 81 G: 43 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 861 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 185 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 117 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 860 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 186 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 111 C: 109 G: 110 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 859 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 187 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 155 C: 143 G: 69 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 858 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 188 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 151 C: 120 G: 118 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 857 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 189 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 147 C: 115 G: 131 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 856 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 190 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 197 C: 120 G: 84 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 855 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 191 Contig length: 600 Avg. contig coverage: 1 Consensus contains: A: 200 C: 113 G: 143 T: 141 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 600 Reads contain 597 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 854 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 192 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 101 C: 100 G: 107 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 853 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 193 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 81 C: 58 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 852 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 194 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 142 C: 105 G: 121 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 851 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 195 Contig length: 450 Avg. contig coverage: 1 Consensus contains: A: 114 C: 103 G: 120 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 450 Reads contain 450 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 850 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 196 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 147 G: 102 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 849 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 197 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 135 C: 109 G: 132 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 848 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 198 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 91 C: 40 G: 35 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 847 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 199 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 159 C: 118 G: 87 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 510 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 846 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 200 Contig length: 581 Avg. contig coverage: 1 Consensus contains: A: 147 C: 170 G: 113 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 581 Reads contain 581 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 845 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 201 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 127 C: 121 G: 96 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 844 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 202 Contig length: 290 Avg. contig coverage: 1 Consensus contains: A: 99 C: 73 G: 32 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 290 Reads contain 290 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 843 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 203 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 76 C: 167 G: 35 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 842 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 204 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 160 C: 114 G: 127 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 841 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 205 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 83 C: 76 G: 107 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 840 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 206 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 109 C: 74 G: 124 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 839 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 207 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 154 C: 140 G: 122 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 566 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 838 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 208 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 100 C: 78 G: 48 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 837 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 209 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 187 C: 147 G: 71 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 836 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 210 Contig length: 567 Avg. contig coverage: 1 Consensus contains: A: 150 C: 104 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 567 Reads contain 567 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 835 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 211 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 150 C: 116 G: 111 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 834 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 212 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 143 C: 88 G: 75 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 833 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 213 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 133 C: 116 G: 141 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 832 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 214 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 82 C: 82 G: 100 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 831 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 215 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 157 C: 111 G: 66 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 830 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 216 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 155 C: 100 G: 88 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 829 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 217 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 66 C: 81 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 828 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 218 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 128 C: 121 G: 115 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 827 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 219 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 139 C: 122 G: 107 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 826 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 220 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 163 C: 100 G: 118 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 825 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 221 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 109 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 824 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 222 Contig length: 542 Avg. contig coverage: 1 Consensus contains: A: 128 C: 154 G: 149 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 542 Reads contain 541 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 823 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 223 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 133 C: 108 G: 101 T: 201 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 543 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 822 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 224 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 123 C: 128 G: 118 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 821 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 225 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 117 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 820 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 226 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 98 C: 62 G: 128 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 819 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 227 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 54 C: 21 G: 47 T: 20 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 818 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 228 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 67 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 817 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 229 Contig length: 464 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 61 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 464 Reads contain 464 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 816 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 230 Contig length: 487 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 106 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 487 Reads contain 487 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 815 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 231 Contig length: 361 Avg. contig coverage: 1 Consensus contains: A: 83 C: 69 G: 105 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 361 Reads contain 361 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 814 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 232 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 135 C: 117 G: 129 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 813 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 233 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 78 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 812 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 234 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 63 C: 90 G: 86 T: 86 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 325 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 811 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 235 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 111 C: 124 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 810 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 236 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 84 C: 178 G: 108 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 809 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 237 Contig length: 656 Avg. contig coverage: 1 Consensus contains: A: 184 C: 144 G: 162 T: 164 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 656 Reads contain 654 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 808 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 238 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 79 C: 85 G: 95 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 807 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 239 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 171 C: 120 G: 172 T: 158 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 621 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 806 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 240 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 117 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 805 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 241 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 153 C: 131 G: 112 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 804 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 242 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 97 C: 102 G: 88 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 803 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 243 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 191 C: 121 G: 109 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 802 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 244 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 170 C: 148 G: 168 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 801 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 245 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 120 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 800 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 246 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 799 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 247 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 117 C: 133 G: 93 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 798 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 248 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 152 C: 107 G: 147 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 585 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 797 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 249 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 131 C: 123 G: 105 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 796 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 250 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 140 C: 113 G: 96 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 795 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 251 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 122 C: 104 G: 104 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 794 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 252 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 159 C: 150 G: 114 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 793 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 253 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 182 C: 107 G: 147 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 792 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 254 Contig length: 615 Avg. contig coverage: 1 Consensus contains: A: 141 C: 148 G: 171 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 615 Reads contain 614 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 791 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 255 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 162 C: 127 G: 96 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 790 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 256 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 148 C: 130 G: 102 T: 179 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 789 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 257 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 135 C: 133 G: 142 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 552 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 788 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 258 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 176 C: 134 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 787 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 259 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 128 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 786 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 260 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 149 C: 104 G: 80 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 785 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 261 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 137 C: 95 G: 96 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 784 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 262 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 138 C: 110 G: 124 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 783 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 263 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 159 C: 94 G: 104 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 782 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 264 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 160 C: 111 G: 72 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 781 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 265 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 134 C: 111 G: 101 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 780 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 266 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 156 C: 141 G: 150 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 592 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 779 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 267 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 91 C: 54 G: 76 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 778 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 268 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 131 C: 78 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 777 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 269 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 99 C: 96 G: 141 T: 186 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 776 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 270 Contig length: 590 Avg. contig coverage: 1 Consensus contains: A: 154 C: 124 G: 146 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 590 Reads contain 590 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 775 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 271 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 138 C: 142 G: 107 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 774 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 272 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 154 C: 117 G: 107 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 773 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 273 Contig length: 159 Avg. contig coverage: 1 Consensus contains: A: 59 C: 36 G: 23 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 159 Reads contain 159 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 772 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 274 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 82 C: 104 G: 83 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 771 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 275 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 94 C: 35 G: 32 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 770 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 276 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 77 C: 113 G: 128 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 769 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 277 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 96 C: 74 G: 87 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 768 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 278 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 129 C: 73 G: 61 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 767 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 279 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 164 C: 91 G: 71 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 766 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 280 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 127 C: 106 G: 112 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 765 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 281 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 92 C: 74 G: 120 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 764 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 282 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 106 C: 54 G: 133 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 763 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 283 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 141 C: 114 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 762 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 284 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 79 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 761 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 285 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 125 C: 103 G: 67 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 760 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 286 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 60 C: 76 G: 82 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 759 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 287 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 96 G: 127 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 758 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 288 Contig length: 675 Avg. contig coverage: 1 Consensus contains: A: 194 C: 136 G: 156 T: 187 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 675 Reads contain 673 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 757 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 289 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 101 C: 111 G: 108 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 756 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 290 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 131 C: 94 G: 159 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 755 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 291 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 156 C: 107 G: 84 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 754 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 292 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 94 C: 104 G: 93 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 753 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 293 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 169 C: 96 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 752 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 294 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 126 C: 78 G: 47 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 751 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 295 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 121 C: 93 G: 83 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 750 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 296 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 139 C: 77 G: 130 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 749 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 297 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 82 C: 23 G: 28 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 748 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 298 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 142 C: 100 G: 84 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 747 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 299 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 131 C: 117 G: 102 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 746 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 300 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 122 C: 106 G: 146 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 490 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 745 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 301 Contig length: 132 Avg. contig coverage: 1 Consensus contains: A: 73 C: 0 G: 30 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 132 Reads contain 132 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 744 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 302 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 107 C: 75 G: 75 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 743 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 303 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 85 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 742 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 304 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 177 C: 130 G: 180 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 741 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 305 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 128 C: 120 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 740 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 306 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 126 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 739 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 307 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 150 C: 107 G: 66 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 738 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 308 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 83 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 430 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 737 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 309 Contig length: 640 Avg. contig coverage: 1 Consensus contains: A: 152 C: 176 G: 123 T: 189 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 640 Reads contain 640 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 736 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 310 Contig length: 637 Avg. contig coverage: 1 Consensus contains: A: 164 C: 151 G: 139 T: 182 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 637 Reads contain 636 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 735 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 311 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 134 C: 113 G: 112 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 734 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 312 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 109 C: 89 G: 77 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 733 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 313 Contig length: 664 Avg. contig coverage: 1 Consensus contains: A: 188 C: 119 G: 177 T: 178 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 664 Reads contain 662 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 732 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 314 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 150 C: 112 G: 139 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 731 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 315 Contig length: 613 Avg. contig coverage: 1 Consensus contains: A: 178 C: 117 G: 156 T: 161 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 613 Reads contain 612 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 730 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 316 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 127 C: 147 G: 109 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 729 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 317 Contig length: 625 Avg. contig coverage: 1 Consensus contains: A: 162 C: 145 G: 162 T: 155 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 625 Reads contain 624 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 728 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 318 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 169 C: 131 G: 128 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 577 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 727 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 319 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 171 C: 141 G: 109 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 726 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 320 Contig length: 611 Avg. contig coverage: 1 Consensus contains: A: 204 C: 139 G: 95 T: 171 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 611 Reads contain 609 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 725 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 321 Contig length: 652 Avg. contig coverage: 1 Consensus contains: A: 160 C: 140 G: 160 T: 191 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 652 Reads contain 651 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 724 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 322 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 144 C: 102 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 723 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 323 Contig length: 570 Avg. contig coverage: 1 Consensus contains: A: 142 C: 136 G: 151 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 570 Reads contain 570 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 722 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 324 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 124 C: 117 G: 125 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 497 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 721 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 325 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 141 C: 140 G: 110 T: 183 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 720 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 326 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 130 C: 117 G: 165 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 719 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 327 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 176 C: 131 G: 78 T: 184 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 718 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 328 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 191 C: 117 G: 63 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 717 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 329 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 167 C: 144 G: 122 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 716 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 330 Contig length: 588 Avg. contig coverage: 1 Consensus contains: A: 198 C: 119 G: 105 T: 165 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 588 Reads contain 587 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 715 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 331 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 155 C: 102 G: 141 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 714 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 332 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 130 C: 137 G: 109 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 713 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 333 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 157 C: 104 G: 149 T: 174 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 584 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 712 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 334 Contig length: 596 Avg. contig coverage: 1 Consensus contains: A: 137 C: 146 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 596 Reads contain 596 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 711 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 335 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 194 C: 102 G: 127 T: 127 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 550 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 710 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 336 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 112 C: 86 G: 83 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 709 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 337 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 58 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 708 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 338 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 137 C: 115 G: 83 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 707 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 339 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 107 C: 107 G: 107 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 706 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 340 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 127 C: 83 G: 42 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 705 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 341 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 172 C: 111 G: 83 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 704 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 342 Contig length: 397 Avg. contig coverage: 1 Consensus contains: A: 119 C: 133 G: 56 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 397 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 703 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 343 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 166 C: 116 G: 166 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 702 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 344 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 131 C: 130 G: 109 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 511 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 701 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 345 Contig length: 344 Avg. contig coverage: 1 Consensus contains: A: 84 C: 80 G: 78 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 344 Reads contain 344 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 700 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 346 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 128 C: 111 G: 108 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 699 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 347 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 82 C: 61 G: 74 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 698 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 348 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 71 C: 78 G: 89 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 697 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 349 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 55 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 696 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 350 Contig length: 298 Avg. contig coverage: 1 Consensus contains: A: 101 C: 64 G: 47 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 298 Reads contain 298 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 695 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 351 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 139 T: 147 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 557 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 694 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 352 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 137 C: 116 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 693 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 353 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 130 C: 141 G: 109 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 692 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 354 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 99 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 691 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 355 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 127 C: 124 G: 109 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 690 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 356 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 114 C: 120 G: 87 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 689 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 357 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 180 C: 147 G: 80 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 688 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 358 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 132 C: 154 G: 95 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 687 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 359 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 194 C: 139 G: 71 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 686 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 360 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 145 C: 116 G: 91 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 490 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 685 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 361 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 169 C: 80 G: 130 T: 122 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 501 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 684 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 362 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 113 C: 124 G: 101 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 683 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 363 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 145 C: 112 G: 150 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 682 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 364 Contig length: 605 Avg. contig coverage: 1 Consensus contains: A: 176 C: 111 G: 158 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 605 Reads contain 605 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 681 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 365 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 135 C: 136 G: 91 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 472 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 680 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 366 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 189 C: 113 G: 110 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 679 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 367 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 123 C: 155 G: 71 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 678 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 368 Contig length: 504 Avg. contig coverage: 1 Consensus contains: A: 125 C: 144 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 504 Reads contain 504 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 677 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 369 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 145 C: 92 G: 86 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 676 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 370 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 129 C: 122 G: 113 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 675 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 371 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 120 C: 130 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 674 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 372 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 141 C: 105 G: 59 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 673 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 373 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 107 C: 116 G: 90 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 672 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 374 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 149 C: 158 G: 123 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 671 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 375 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 103 C: 75 G: 91 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 670 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 376 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 121 C: 116 G: 83 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 437 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 669 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 377 Contig length: 302 Avg. contig coverage: 1 Consensus contains: A: 70 C: 79 G: 72 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 302 Reads contain 302 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 668 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 378 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 102 C: 82 G: 116 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 667 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 379 Contig length: 594 Avg. contig coverage: 1 Consensus contains: A: 168 C: 111 G: 165 T: 149 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 594 Reads contain 593 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 666 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 380 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 122 C: 95 G: 94 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 665 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 381 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 114 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 382 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 664 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 382 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 164 C: 112 G: 155 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 383 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 663 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 383 Contig length: 499 Avg. contig coverage: 1 Consensus contains: A: 164 C: 120 G: 79 T: 134 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 499 Reads contain 497 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 384 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 662 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 384 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 142 C: 132 G: 94 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 385 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 661 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 385 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 133 C: 127 G: 109 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 386 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 660 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 386 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 108 C: 139 G: 129 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 387 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 659 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 387 Contig length: 582 Avg. contig coverage: 1 Consensus contains: A: 135 C: 119 G: 152 T: 174 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 582 Reads contain 580 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 388 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 658 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 388 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 131 C: 95 G: 57 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 389 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 657 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 389 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 71 G: 91 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 390 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 656 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 390 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 120 C: 86 G: 106 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 391 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 655 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 391 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 177 C: 128 G: 79 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 392 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 654 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 392 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 80 C: 80 G: 92 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 393 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 653 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 393 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 164 C: 136 G: 116 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 394 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 652 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 394 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 130 C: 128 G: 89 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 395 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 651 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 395 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 123 C: 132 G: 138 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 396 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 650 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 396 Contig length: 516 Avg. contig coverage: 1 Consensus contains: A: 178 C: 122 G: 80 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 516 Reads contain 516 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 397 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 649 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 397 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 143 C: 130 G: 112 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 398 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 648 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 398 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 189 C: 124 G: 167 T: 181 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 399 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 647 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 399 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 115 C: 122 G: 148 T: 178 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 400 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 646 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 400 Contig length: 586 Avg. contig coverage: 1 Consensus contains: A: 186 C: 135 G: 132 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 586 Reads contain 586 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 401 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 645 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 401 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 114 C: 73 G: 121 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 402 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 644 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 402 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 108 C: 66 G: 70 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 403 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 643 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 403 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 142 C: 110 G: 139 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 404 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 642 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 404 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 132 C: 117 G: 154 T: 148 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 551 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 405 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 641 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 405 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 80 C: 100 G: 74 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 406 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 640 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 406 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 98 C: 68 G: 69 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 407 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 639 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 407 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 83 C: 54 G: 84 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 408 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 638 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 408 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 23 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 409 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 637 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 409 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 89 C: 66 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 410 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 636 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 410 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 115 C: 170 G: 114 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 411 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 635 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 411 Contig length: 578 Avg. contig coverage: 1 Consensus contains: A: 169 C: 135 G: 101 T: 170 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 578 Reads contain 575 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 412 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 634 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 412 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 88 C: 90 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 413 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 633 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 413 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 93 C: 151 G: 93 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 414 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 632 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 414 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 92 C: 87 G: 65 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 415 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 631 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 415 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 108 C: 194 G: 31 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 416 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 630 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 416 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 133 C: 114 G: 85 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 417 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 629 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 417 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 146 C: 130 G: 113 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 418 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 628 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 418 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 70 C: 28 G: 38 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 419 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 627 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 419 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 66 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 420 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 626 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 420 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 162 C: 106 G: 135 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 421 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 625 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 421 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 138 C: 86 G: 117 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 422 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 624 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 422 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 76 C: 82 G: 84 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 423 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 623 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 423 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 129 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 424 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 622 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 424 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 172 C: 118 G: 141 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 425 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 621 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 425 Contig length: 599 Avg. contig coverage: 1 Consensus contains: A: 162 C: 146 G: 137 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 599 Reads contain 599 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 426 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 620 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 426 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 109 C: 80 G: 107 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 427 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 619 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 427 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 138 C: 111 G: 169 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 428 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 618 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 428 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 147 C: 106 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 429 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 617 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 429 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 123 C: 145 G: 141 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 430 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 616 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 430 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 124 C: 115 G: 131 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 431 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 615 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 431 Contig length: 561 Avg. contig coverage: 1 Consensus contains: A: 169 C: 127 G: 138 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 561 Reads contain 561 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 432 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 614 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 432 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 115 C: 83 G: 82 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 433 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 613 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 433 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 160 C: 125 G: 133 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 434 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 612 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 434 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 104 C: 137 G: 49 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 435 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 611 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 435 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 143 C: 110 G: 124 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 436 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 610 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 436 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 150 C: 82 G: 64 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 437 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 609 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 437 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 139 C: 123 G: 146 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 438 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 608 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 438 Contig length: 297 Avg. contig coverage: 1 Consensus contains: A: 101 C: 71 G: 52 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 297 Reads contain 297 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 439 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 607 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 439 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 91 C: 87 G: 68 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 440 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 606 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 440 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 76 C: 66 G: 54 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 441 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 605 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 441 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 64 C: 41 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 442 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 604 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 442 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 141 C: 115 G: 96 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 443 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 603 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 443 Contig length: 641 Avg. contig coverage: 1 Consensus contains: A: 181 C: 170 G: 127 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 641 Reads contain 641 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 444 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 602 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 444 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 95 C: 59 G: 62 T: 136 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 352 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 445 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 601 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 445 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 124 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 545 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 446 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 600 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 446 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 60 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 447 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 599 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 447 Contig length: 607 Avg. contig coverage: 1 Consensus contains: A: 171 C: 121 G: 153 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 607 Reads contain 607 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 448 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 598 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 448 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 149 C: 136 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 449 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 597 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 449 Contig length: 170 Avg. contig coverage: 1 Consensus contains: A: 54 C: 27 G: 5 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 170 Reads contain 170 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 450 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 596 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 450 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 168 C: 108 G: 118 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 451 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 595 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 451 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 107 C: 51 G: 71 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 452 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 594 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 452 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 72 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 453 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 593 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 453 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 122 C: 91 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 452 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 454 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 592 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 454 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 126 C: 91 G: 73 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 455 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 591 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 455 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 127 C: 70 G: 51 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 456 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 590 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 456 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 144 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 457 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 589 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 457 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 119 C: 103 G: 129 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 458 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 588 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 458 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 158 C: 123 G: 122 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 459 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 587 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 459 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 136 C: 110 G: 102 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 460 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 586 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 460 Contig length: 283 Avg. contig coverage: 1 Consensus contains: A: 74 C: 58 G: 76 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 283 Reads contain 283 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 461 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 585 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 461 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 154 C: 120 G: 101 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 462 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 584 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 462 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 161 C: 164 G: 141 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 623 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 463 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 583 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 463 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 172 C: 120 G: 123 T: 188 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 464 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 582 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 464 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 137 C: 80 G: 45 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 465 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 581 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 465 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 88 C: 103 G: 68 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 466 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 580 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 466 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 126 C: 114 G: 100 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 467 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 579 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 467 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 105 C: 110 G: 74 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 468 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 578 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 468 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 90 C: 101 G: 94 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 469 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 577 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 469 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 65 C: 56 G: 57 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 470 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 576 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 470 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 98 C: 87 G: 87 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 471 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 575 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 471 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 80 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 472 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 574 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 472 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 124 C: 79 G: 152 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 473 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 573 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 473 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 102 C: 42 G: 43 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 474 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 572 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 474 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 62 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 475 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 571 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 475 Contig length: 111 Avg. contig coverage: 1 Consensus contains: A: 28 C: 16 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 111 Reads contain 111 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 476 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 570 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 476 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 127 C: 66 G: 102 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 477 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 569 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 477 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 73 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 478 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 568 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 478 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 67 C: 91 G: 82 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 479 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 567 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 479 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 62 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 480 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 566 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 480 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 100 C: 116 G: 96 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 481 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 565 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 481 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 81 C: 80 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 482 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 564 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 482 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 105 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 454 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 483 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 563 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 483 Contig length: 279 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 45 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 279 Reads contain 279 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 484 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 562 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 484 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 49 C: 79 G: 44 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 485 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 561 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 485 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 67 C: 110 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 486 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 560 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 486 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 122 C: 89 G: 59 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 487 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 559 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 487 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 122 C: 97 G: 90 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 488 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 558 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 488 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 86 C: 123 G: 113 T: 99 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 489 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 557 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 489 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 96 C: 70 G: 72 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 490 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 556 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 490 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 104 C: 59 G: 45 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 284 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 491 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 555 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 491 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 121 C: 102 G: 84 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 492 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 554 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 492 Contig length: 314 Avg. contig coverage: 1 Consensus contains: A: 80 C: 86 G: 59 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 314 Reads contain 314 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 493 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 553 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 493 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 64 C: 51 G: 49 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 494 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 552 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 494 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 102 G: 80 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 495 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 551 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 495 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 84 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 496 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 550 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 496 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 107 C: 39 G: 26 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 497 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 549 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 497 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 84 C: 71 G: 90 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 498 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 548 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 498 Contig length: 218 Avg. contig coverage: 1 Consensus contains: A: 69 C: 54 G: 25 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 218 Reads contain 218 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 499 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 547 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 499 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 113 C: 112 G: 75 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 500 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 546 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 500 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 73 C: 53 G: 86 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 501 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 545 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 501 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 71 C: 58 G: 57 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 502 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 544 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 502 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 110 C: 62 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 503 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 543 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 503 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 104 C: 73 G: 51 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 504 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 542 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 504 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 29 C: 31 G: 31 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 505 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 541 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 505 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 125 C: 95 G: 86 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 506 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 540 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 506 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 62 C: 41 G: 50 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 507 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 539 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 507 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 69 C: 65 G: 59 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 508 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 538 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 508 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 113 C: 87 G: 115 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 509 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 537 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 509 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 82 C: 109 G: 118 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 510 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 536 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 510 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 139 C: 108 G: 119 T: 112 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 478 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 511 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 535 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 511 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 97 C: 78 G: 58 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 512 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 534 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 512 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 106 C: 173 G: 113 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 513 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 533 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 513 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 111 C: 99 G: 110 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 514 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 532 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 514 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 144 C: 132 G: 133 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 544 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 515 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 531 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 515 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 155 C: 114 G: 114 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 516 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 530 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 516 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 114 C: 123 G: 125 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 517 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 529 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 517 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 60 C: 47 G: 38 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 518 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 528 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 518 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 98 C: 90 G: 82 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 371 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 519 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 527 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 519 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 125 C: 88 G: 130 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 520 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 526 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 520 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 154 C: 137 G: 126 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 521 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 525 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 521 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 129 C: 149 G: 122 T: 144 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 522 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 524 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 522 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 164 C: 148 G: 102 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 523 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 523 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 523 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 73 C: 87 G: 86 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 524 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 522 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 524 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 123 C: 137 G: 78 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 525 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 521 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 525 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 43 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 526 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 520 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 526 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 107 C: 126 G: 89 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 527 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 519 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 527 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 82 C: 34 G: 27 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 528 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 518 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 528 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 117 C: 98 G: 136 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 529 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 517 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 529 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 88 C: 70 G: 83 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 530 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 516 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 530 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 158 C: 103 G: 107 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 531 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 515 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 531 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 137 C: 101 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 532 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 514 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 532 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 137 C: 127 G: 146 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 533 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 513 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 533 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 88 C: 122 G: 85 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 534 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 512 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 534 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 90 C: 60 G: 56 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 535 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 511 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 535 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 112 C: 64 G: 29 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 536 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 510 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 536 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 122 C: 109 G: 90 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 537 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 509 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 537 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 81 C: 95 G: 108 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 538 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 508 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 538 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 135 C: 132 G: 91 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 539 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 507 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 539 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 114 C: 75 G: 55 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 540 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 506 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 540 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 137 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 541 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 505 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 541 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 130 C: 103 G: 137 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 542 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 504 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 542 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 118 C: 104 G: 106 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 543 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 503 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 543 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 106 C: 63 G: 127 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 544 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 502 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 544 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 146 C: 124 G: 169 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 545 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 501 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 545 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 113 C: 84 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 546 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 500 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 546 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 93 C: 66 G: 94 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 547 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 499 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 547 Contig length: 273 Avg. contig coverage: 1 Consensus contains: A: 63 C: 55 G: 79 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 273 Reads contain 273 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 548 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 498 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 548 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 136 C: 81 G: 118 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 549 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 497 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 549 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 106 C: 78 G: 114 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 550 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 496 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 550 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 42 C: 52 G: 44 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 551 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 495 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 551 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 98 C: 81 G: 72 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 552 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 494 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 552 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 139 C: 107 G: 103 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 553 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 493 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 553 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 86 C: 96 G: 103 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 554 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 492 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 554 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 111 C: 81 G: 96 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 555 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 491 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 555 Contig length: 125 Avg. contig coverage: 1 Consensus contains: A: 36 C: 29 G: 23 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 125 Reads contain 125 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 556 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 490 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 556 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 108 C: 75 G: 97 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 557 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 489 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 557 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 130 C: 90 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 558 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 488 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 558 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 101 C: 85 G: 107 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 559 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 487 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 559 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 156 C: 88 G: 35 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 560 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 486 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 560 Contig length: 439 Avg. contig coverage: 1 Consensus contains: A: 105 C: 112 G: 97 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 439 Reads contain 439 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 561 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 485 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 561 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 138 C: 117 G: 97 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 562 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 484 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 562 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 125 C: 124 G: 132 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 563 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 483 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 563 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 564 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 482 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 564 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 128 C: 105 G: 76 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 565 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 481 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 565 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 93 C: 79 G: 118 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 566 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 480 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 566 Contig length: 294 Avg. contig coverage: 1 Consensus contains: A: 102 C: 61 G: 47 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 294 Reads contain 294 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 567 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 479 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 567 Contig length: 414 Avg. contig coverage: 1 Consensus contains: A: 132 C: 110 G: 66 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 414 Reads contain 414 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 568 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 478 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 568 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 124 C: 84 G: 109 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 569 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 477 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 569 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 121 C: 100 G: 133 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 570 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 476 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 570 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 116 C: 128 G: 87 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 571 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 475 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 571 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 114 C: 111 G: 89 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 572 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 474 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 572 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 47 C: 72 G: 41 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 573 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 473 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 573 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 112 C: 107 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 574 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 472 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 574 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 95 C: 107 G: 120 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 575 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 471 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 575 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 144 C: 98 G: 89 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 576 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 470 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 576 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 88 C: 37 G: 17 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 577 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 469 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 577 Contig length: 130 Avg. contig coverage: 1 Consensus contains: A: 30 C: 27 G: 40 T: 33 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 130 Reads contain 130 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 578 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 468 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 578 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 95 G: 94 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 579 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 467 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 579 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 130 C: 112 G: 91 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 580 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 466 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 580 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 71 C: 115 G: 74 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 581 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 465 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 581 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 66 C: 52 G: 45 T: 43 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 582 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 464 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 582 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 107 C: 85 G: 87 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 399 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 583 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 463 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 583 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 152 C: 87 G: 95 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 584 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 462 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 584 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 128 C: 70 G: 96 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 585 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 461 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 585 Contig length: 492 Avg. contig coverage: 1 Consensus contains: A: 156 C: 82 G: 112 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 492 Reads contain 492 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 586 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 460 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 586 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 94 C: 57 G: 116 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 587 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 459 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 587 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 127 C: 100 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 588 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 458 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 588 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 72 C: 94 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 589 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 457 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 589 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 46 C: 57 G: 55 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 590 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 456 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 590 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 101 T: 140 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 470 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 591 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 455 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 591 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 133 C: 126 G: 145 T: 145 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 549 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 592 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 454 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 592 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 137 C: 155 G: 115 T: 140 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 547 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 593 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 453 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 593 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 93 C: 102 G: 92 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 594 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 452 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 594 Contig length: 197 Avg. contig coverage: 1 Consensus contains: A: 76 C: 46 G: 17 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 197 Reads contain 197 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 595 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 451 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 595 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 99 C: 86 G: 74 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 596 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 450 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 596 Contig length: 184 Avg. contig coverage: 1 Consensus contains: A: 47 C: 46 G: 50 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 184 Reads contain 184 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 597 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 449 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 597 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 45 C: 21 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 598 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 448 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 598 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 96 C: 81 G: 90 T: 96 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 363 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 599 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 447 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 599 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 103 G: 83 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 600 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 446 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 600 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 134 C: 98 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 601 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 445 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 601 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 82 C: 98 G: 74 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 375 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 602 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 444 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 602 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 115 C: 75 G: 57 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 603 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 443 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 603 Contig length: 99 Avg. contig coverage: 1 Consensus contains: A: 40 C: 15 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 99 Reads contain 99 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 604 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 442 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 604 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 64 G: 46 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 605 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 441 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 605 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 45 C: 54 G: 52 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 606 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 440 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 606 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 106 C: 79 G: 101 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 607 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 439 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 607 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 78 C: 80 G: 53 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 608 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 438 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 608 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 121 C: 85 G: 105 T: 117 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 428 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 609 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 437 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 609 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 107 C: 95 G: 82 T: 114 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 398 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 610 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 436 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 610 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 118 C: 105 G: 101 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 611 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 435 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 611 Contig length: 178 Avg. contig coverage: 1 Consensus contains: A: 61 C: 39 G: 31 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 178 Reads contain 178 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 612 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 434 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 612 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 19 G: 40 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 613 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 433 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 613 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 94 C: 69 G: 101 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 614 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 432 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 614 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 98 C: 63 G: 75 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 615 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 431 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 615 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 120 C: 104 G: 87 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 616 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 430 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 616 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 117 C: 113 G: 107 T: 149 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 486 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 617 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 429 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 617 Contig length: 228 Avg. contig coverage: 1 Consensus contains: A: 61 C: 49 G: 52 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 228 Reads contain 228 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 618 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 428 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 618 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 102 G: 109 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 619 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 427 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 619 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 80 C: 102 G: 104 T: 105 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 391 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 620 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 426 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 620 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 99 C: 72 G: 85 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 375 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 621 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 425 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 621 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 69 C: 67 G: 129 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 622 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 424 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 622 Contig length: 124 Avg. contig coverage: 1 Consensus contains: A: 50 C: 22 G: 24 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 124 Reads contain 124 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 623 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 423 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 623 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 75 C: 63 G: 94 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 624 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 422 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 624 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 49 C: 44 G: 54 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 625 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 421 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 625 Contig length: 123 Avg. contig coverage: 1 Consensus contains: A: 23 C: 43 G: 29 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 123 Reads contain 123 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 626 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 420 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 626 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 118 C: 90 G: 81 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 398 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 627 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 419 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 627 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 110 C: 122 G: 92 T: 163 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 487 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 628 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 418 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 628 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 118 C: 144 G: 110 T: 133 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 505 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 629 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 417 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 629 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 53 C: 36 G: 81 T: 46 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 630 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 416 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 630 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 125 G: 77 T: 126 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 440 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 631 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 415 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 631 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 57 C: 58 G: 64 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 632 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 414 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 632 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 107 C: 119 G: 88 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 633 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 413 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 633 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 93 C: 82 G: 74 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 634 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 412 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 634 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 90 C: 99 G: 99 T: 102 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 390 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 635 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 411 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 635 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 124 C: 88 G: 89 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 636 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 410 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 636 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 81 C: 89 G: 101 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 366 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 637 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 409 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 637 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 103 C: 109 G: 91 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 441 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 638 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 408 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 638 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 115 C: 58 G: 27 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 639 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 407 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 639 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 57 C: 56 G: 42 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 640 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 406 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 640 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 110 C: 119 G: 106 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 451 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 641 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 405 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 641 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 109 C: 94 G: 96 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 642 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 404 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 642 Contig length: 304 Avg. contig coverage: 1 Consensus contains: A: 105 C: 58 G: 52 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 304 Reads contain 304 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 643 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 403 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 643 Contig length: 383 Avg. contig coverage: 1 Consensus contains: A: 105 C: 94 G: 96 T: 86 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 383 Reads contain 381 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 644 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 402 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 644 Contig length: 186 Avg. contig coverage: 1 Consensus contains: A: 84 C: 40 G: 21 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 186 Reads contain 186 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 645 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 401 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 645 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 156 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 474 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 646 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 400 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 646 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 29 C: 37 G: 32 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 647 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 399 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 647 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 146 C: 96 G: 124 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 504 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 648 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 398 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 648 Contig length: 528 Avg. contig coverage: 1 Consensus contains: A: 138 C: 144 G: 78 T: 166 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 528 Reads contain 526 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 649 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 397 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 649 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 54 C: 72 G: 57 T: 88 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 271 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 650 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 396 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 650 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 73 C: 97 G: 56 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 651 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 395 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 651 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 55 C: 57 G: 51 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 652 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 394 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 652 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 51 C: 56 G: 50 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 653 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 393 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 653 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 107 C: 102 G: 80 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 654 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 392 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 654 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 67 T: 57 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 655 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 391 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 655 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 167 C: 100 G: 49 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 656 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 390 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 656 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 103 C: 78 G: 110 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 657 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 389 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 657 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 102 C: 64 G: 35 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 658 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 388 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 658 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 55 C: 60 G: 43 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 659 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 387 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 659 Contig length: 213 Avg. contig coverage: 1 Consensus contains: A: 50 C: 88 G: 26 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 213 Reads contain 213 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 660 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 386 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 660 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 107 C: 113 G: 90 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 661 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 385 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 661 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 93 C: 58 G: 92 T: 79 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 662 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 384 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 662 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 108 C: 108 G: 111 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 663 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 383 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 663 Contig length: 287 Avg. contig coverage: 1 Consensus contains: A: 79 C: 74 G: 68 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 287 Reads contain 286 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 664 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 382 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 664 Contig length: 191 Avg. contig coverage: 1 Consensus contains: A: 52 C: 46 G: 39 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 191 Reads contain 191 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 665 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 381 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 665 Contig length: 115 Avg. contig coverage: 1 Consensus contains: A: 33 C: 38 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 115 Reads contain 115 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 666 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 380 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 666 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 84 C: 56 G: 85 T: 119 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 344 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 667 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 379 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 667 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 141 C: 116 G: 81 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 668 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 378 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 668 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 104 C: 74 G: 44 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 669 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 377 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 669 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 71 C: 82 G: 76 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 670 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 376 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 670 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 56 C: 61 G: 33 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 671 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 375 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 671 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 81 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 672 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 374 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 672 Contig length: 203 Avg. contig coverage: 1 Consensus contains: A: 57 C: 50 G: 43 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 203 Reads contain 203 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 673 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 373 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 673 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 55 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 674 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 372 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 674 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 113 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 675 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 371 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 675 Contig length: 101 Avg. contig coverage: 1 Consensus contains: A: 24 C: 41 G: 14 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 101 Reads contain 101 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 676 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 370 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 676 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 55 C: 47 G: 39 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 677 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 369 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 677 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 100 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 678 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 368 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 678 Contig length: 250 Avg. contig coverage: 1 Consensus contains: A: 62 C: 65 G: 56 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 250 Reads contain 250 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 679 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 367 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 679 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 50 C: 45 G: 66 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 680 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 366 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 680 Contig length: 152 Avg. contig coverage: 1 Consensus contains: A: 37 C: 41 G: 39 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 152 Reads contain 152 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 681 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 365 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 681 Contig length: 257 Avg. contig coverage: 1 Consensus contains: A: 89 C: 53 G: 43 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 257 Reads contain 257 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 682 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 364 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 682 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 126 C: 75 G: 127 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 445 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 683 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 363 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 683 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 64 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 684 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 362 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 684 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 96 G: 77 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 685 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 361 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 685 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 150 C: 142 G: 123 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 686 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 360 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 686 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 118 C: 93 G: 74 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 687 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 359 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 687 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 156 C: 125 G: 82 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 688 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 358 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 688 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 92 C: 109 G: 86 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 403 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 689 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 357 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 689 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 131 C: 128 G: 115 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 690 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 356 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 690 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 143 C: 79 G: 122 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 691 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 355 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 691 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 115 C: 104 G: 100 T: 134 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 453 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 692 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 354 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 692 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 122 C: 78 G: 45 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 693 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 353 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 693 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 105 C: 69 G: 108 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 389 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 694 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 352 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 694 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 61 C: 86 G: 82 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 695 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 351 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 695 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 146 C: 89 G: 135 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 696 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 350 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 696 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 107 C: 88 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 697 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 349 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 697 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 63 C: 79 G: 101 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 698 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 348 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 698 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 141 C: 87 G: 94 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 699 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 347 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 699 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 118 C: 92 G: 120 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 700 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 346 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 700 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 80 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 701 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 345 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 701 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 77 C: 77 G: 73 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 702 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 344 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 702 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 94 C: 110 G: 91 T: 74 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 369 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 703 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 343 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 703 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 154 C: 103 G: 99 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 510 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 704 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 342 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 704 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 125 C: 120 G: 120 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 484 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 705 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 341 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 705 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 117 C: 97 G: 127 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 706 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 340 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 706 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 104 C: 154 G: 89 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 707 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 339 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 707 Contig length: 363 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 76 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 363 Reads contain 363 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 708 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 338 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 708 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 47 C: 55 G: 52 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 709 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 337 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 709 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 93 C: 131 G: 119 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 710 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 336 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 710 Contig length: 86 Avg. contig coverage: 1 Consensus contains: A: 36 C: 17 G: 12 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 86 Reads contain 86 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 711 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 335 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 711 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 111 C: 100 G: 71 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 712 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 334 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 712 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 76 C: 81 G: 92 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 713 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 333 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 713 Contig length: 96 Avg. contig coverage: 1 Consensus contains: A: 24 C: 16 G: 25 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 96 Reads contain 96 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 714 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 332 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 714 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 126 C: 117 G: 114 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 715 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 331 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 715 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 117 C: 65 G: 93 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 716 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 330 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 716 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 106 C: 87 G: 69 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 717 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 329 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 717 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 110 C: 142 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 718 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 328 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 718 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 116 C: 83 G: 84 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 719 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 327 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 719 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 171 C: 107 G: 72 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 720 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 326 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 720 Contig length: 313 Avg. contig coverage: 1 Consensus contains: A: 94 C: 56 G: 81 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 313 Reads contain 313 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 721 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 325 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 721 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 57 C: 40 G: 58 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 722 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 324 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 722 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 121 C: 77 G: 51 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 723 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 323 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 723 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 135 C: 73 G: 84 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 724 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 322 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 724 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 135 C: 98 G: 104 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 725 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 321 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 725 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 107 C: 96 G: 140 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 726 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 320 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 726 Contig length: 108 Avg. contig coverage: 1 Consensus contains: A: 35 C: 2 G: 45 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 108 Reads contain 108 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 727 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 319 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 727 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 89 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 728 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 318 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 728 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 141 C: 122 G: 122 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 729 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 317 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 729 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 91 C: 80 G: 75 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 730 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 316 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 730 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 130 C: 106 G: 104 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 731 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 315 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 731 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 123 C: 125 G: 138 T: 123 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 509 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 732 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 314 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 732 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 95 C: 68 G: 143 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 733 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 313 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 733 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 139 C: 101 G: 142 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 734 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 312 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 734 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 114 C: 82 G: 109 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 735 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 311 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 735 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 103 C: 103 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 399 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 736 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 310 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 736 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 190 C: 98 G: 137 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 737 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 309 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 737 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 65 C: 95 G: 93 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 738 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 308 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 738 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 133 C: 123 G: 90 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 739 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 307 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 739 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 120 C: 100 G: 88 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 740 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 306 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 740 Contig length: 424 Avg. contig coverage: 1 Consensus contains: A: 121 C: 74 G: 93 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 424 Reads contain 424 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 741 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 305 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 741 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 107 C: 43 G: 47 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 742 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 304 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 742 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 143 C: 125 G: 121 T: 113 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 502 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 743 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 303 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 743 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 120 C: 160 G: 92 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 744 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 302 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 744 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 156 C: 89 G: 130 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 745 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 301 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 745 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 87 C: 91 G: 122 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 746 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 300 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 746 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 102 C: 81 G: 151 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 747 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 299 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 747 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 149 C: 116 G: 116 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 748 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 298 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 748 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 32 C: 39 G: 40 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 749 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 297 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 749 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 124 C: 63 G: 88 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 750 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 296 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 750 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 84 G: 98 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 751 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 295 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 751 Contig length: 482 Avg. contig coverage: 1 Consensus contains: A: 119 C: 97 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 482 Reads contain 482 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 752 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 294 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 752 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 152 C: 93 G: 115 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 753 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 293 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 753 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 74 C: 88 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 754 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 292 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 754 Contig length: 462 Avg. contig coverage: 1 Consensus contains: A: 161 C: 110 G: 70 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 462 Reads contain 462 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 755 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 291 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 755 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 53 G: 126 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 756 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 290 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 756 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 132 C: 94 G: 114 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 757 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 289 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 757 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 124 C: 152 G: 95 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 758 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 288 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 758 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 165 C: 112 G: 148 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 759 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 287 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 759 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 95 C: 72 G: 92 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 760 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 286 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 760 Contig length: 341 Avg. contig coverage: 1 Consensus contains: A: 103 C: 52 G: 62 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 341 Reads contain 341 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 761 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 285 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 761 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 72 C: 88 G: 81 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 762 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 284 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 762 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 119 C: 55 G: 97 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 763 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 283 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 763 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 106 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 764 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 282 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 764 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 97 C: 98 G: 111 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 765 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 281 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 765 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 56 C: 53 G: 57 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 766 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 280 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 766 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 131 C: 107 G: 96 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 426 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 767 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 279 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 767 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 74 C: 75 G: 64 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 768 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 278 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 768 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 83 C: 77 G: 97 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 769 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 277 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 769 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 109 C: 61 G: 77 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 770 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 276 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 770 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 51 C: 32 G: 72 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 771 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 275 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 771 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 135 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 444 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 772 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 274 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 772 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 52 T: 59 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 248 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 773 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 273 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 773 Contig length: 380 Avg. contig coverage: 1 Consensus contains: A: 133 C: 74 G: 82 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 380 Reads contain 380 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 774 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 272 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 774 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 99 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 775 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 271 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 775 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 105 C: 97 G: 70 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 776 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 270 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 776 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 54 C: 49 G: 55 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 777 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 269 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 777 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 116 C: 80 G: 77 T: 110 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 383 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 778 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 268 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 778 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 79 C: 62 G: 75 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 779 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 267 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 779 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 131 C: 81 G: 53 T: 90 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 355 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 780 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 266 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 780 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 164 C: 108 G: 146 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 781 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 265 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 781 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 138 C: 75 G: 65 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 782 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 264 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 782 Contig length: 181 Avg. contig coverage: 1 Consensus contains: A: 42 C: 28 G: 49 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 181 Reads contain 181 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 783 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 263 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 783 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 102 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 784 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 262 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 784 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 66 G: 80 T: 93 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 333 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 785 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 261 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 785 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 52 G: 88 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 786 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 260 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 786 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 112 C: 92 G: 60 T: 94 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 358 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 787 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 259 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 787 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 40 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 788 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 258 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 788 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 90 C: 58 G: 80 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 789 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 257 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 789 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 104 C: 64 G: 89 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 790 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 256 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 790 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 96 C: 91 G: 59 T: 76 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 791 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 255 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 791 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 116 C: 61 G: 80 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 792 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 254 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 792 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 96 C: 77 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 793 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 253 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 793 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 65 C: 64 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 794 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 252 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 794 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 46 C: 69 G: 109 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 795 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 251 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 795 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 69 C: 81 G: 81 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 796 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 250 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 796 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 135 C: 87 G: 120 T: 144 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 486 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 797 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 249 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 797 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 92 C: 57 G: 69 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 310 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 798 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 248 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 798 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 98 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 799 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 247 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 799 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 100 C: 97 G: 75 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 800 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 246 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 800 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 106 C: 71 G: 130 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 801 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 245 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 801 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 125 C: 74 G: 110 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 802 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 244 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 802 Contig length: 180 Avg. contig coverage: 1 Consensus contains: A: 42 C: 36 G: 70 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 180 Reads contain 180 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 803 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 243 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 803 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 108 C: 78 G: 100 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 804 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 242 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 804 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 78 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 805 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 241 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 805 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 110 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 806 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 240 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 806 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 135 C: 82 G: 85 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 807 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 239 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 807 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 100 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 484 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 808 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 238 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 808 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 103 C: 73 G: 118 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 408 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 809 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 237 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 809 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 85 C: 86 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 810 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 236 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 810 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 53 C: 70 G: 111 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 811 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 235 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 811 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 73 C: 65 G: 68 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 812 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 234 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 812 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 81 C: 93 G: 129 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 813 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 233 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 813 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 70 C: 103 G: 76 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 814 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 232 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 814 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 147 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 815 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 231 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 815 Contig length: 157 Avg. contig coverage: 1 Consensus contains: A: 31 C: 55 G: 39 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 157 Reads contain 157 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 816 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 230 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 816 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 116 C: 92 G: 121 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 817 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 229 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 817 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 67 C: 53 G: 82 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 818 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 228 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 818 Contig length: 117 Avg. contig coverage: 1 Consensus contains: A: 42 C: 21 G: 12 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 117 Reads contain 117 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 819 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 227 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 819 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 75 C: 48 G: 93 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 820 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 226 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 820 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 101 C: 74 G: 90 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 373 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 821 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 225 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 821 Contig length: 309 Avg. contig coverage: 1 Consensus contains: A: 74 C: 67 G: 82 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 309 Reads contain 309 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 822 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 224 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 822 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 102 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 823 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 223 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 823 Contig length: 210 Avg. contig coverage: 1 Consensus contains: A: 79 C: 39 G: 42 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 210 Reads contain 210 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 824 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 222 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 824 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 98 C: 82 G: 75 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 825 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 221 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 825 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 131 C: 82 G: 88 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 826 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 220 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 826 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 47 C: 30 G: 40 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 827 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 219 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 827 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 121 C: 109 G: 108 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 828 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 218 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 828 Contig length: 270 Avg. contig coverage: 1 Consensus contains: A: 71 C: 75 G: 72 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 270 Reads contain 270 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 829 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 217 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 829 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 58 C: 47 G: 65 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 830 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 216 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 830 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 141 C: 88 G: 69 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 831 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 215 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 831 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 65 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 832 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 214 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 832 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 79 G: 76 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 833 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 213 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 833 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 98 C: 138 G: 110 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 834 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 212 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 834 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 139 C: 160 G: 99 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 835 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 211 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 835 Contig length: 264 Avg. contig coverage: 1 Consensus contains: A: 86 C: 33 G: 51 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 264 Reads contain 264 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 836 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 210 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 836 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 69 C: 95 G: 68 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 837 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 209 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 837 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 85 C: 58 G: 93 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 838 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 208 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 838 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 118 C: 122 G: 88 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 839 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 207 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 839 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 95 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 395 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 840 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 206 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 840 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 84 C: 83 G: 66 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 841 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 205 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 841 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 160 C: 66 G: 64 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 842 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 204 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 842 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 111 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 479 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 843 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 203 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 843 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 75 G: 66 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 844 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 202 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 844 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 94 C: 70 G: 93 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 845 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 201 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 845 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 122 G: 98 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 846 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 200 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 846 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 43 C: 54 G: 69 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 847 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 199 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 847 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 54 C: 53 G: 58 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 848 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 198 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 848 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 93 G: 84 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 849 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 197 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 849 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 49 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 850 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 196 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 850 Contig length: 303 Avg. contig coverage: 1 Consensus contains: A: 75 C: 71 G: 69 T: 82 N: 6 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 303 Reads contain 297 bases, 6 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 851 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 195 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 851 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 85 C: 95 G: 68 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 338 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 852 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 194 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 852 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 79 C: 90 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 853 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 193 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 853 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 61 C: 153 G: 63 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 854 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 192 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 854 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 99 C: 81 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 855 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 191 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 855 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 120 C: 99 G: 78 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 856 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 190 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 856 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 134 C: 126 G: 107 T: 155 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 522 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 857 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 189 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 857 Contig length: 331 Avg. contig coverage: 1 Consensus contains: A: 87 C: 64 G: 88 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 331 Reads contain 331 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 858 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 188 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 858 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 105 G: 109 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 859 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 187 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 859 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 77 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 860 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 186 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 860 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 97 C: 85 G: 69 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 365 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 861 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 185 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 861 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 116 C: 60 G: 104 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 862 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 184 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 862 Contig length: 147 Avg. contig coverage: 1 Consensus contains: A: 31 C: 30 G: 49 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 147 Reads contain 147 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 863 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 183 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 863 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 864 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 182 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 864 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 50 G: 74 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 865 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 181 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 865 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 81 G: 67 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 866 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 180 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 866 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 87 C: 93 G: 102 T: 89 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 371 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 867 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 179 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 867 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 92 C: 54 G: 124 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 868 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 178 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 868 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 88 C: 87 G: 81 T: 75 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 331 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 869 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 177 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 869 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 83 C: 88 G: 55 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 870 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 176 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 870 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 156 C: 87 G: 95 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 871 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 175 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 871 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 80 C: 87 G: 84 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 872 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 174 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 872 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 97 C: 95 G: 77 T: 85 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 354 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 873 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 173 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 873 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 74 C: 29 G: 27 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 874 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 172 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 874 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 106 C: 109 G: 84 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 409 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 875 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 171 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 875 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 103 C: 90 G: 100 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 876 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 170 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 876 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 113 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 877 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 169 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 877 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 137 C: 98 G: 81 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 878 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 168 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 878 Contig length: 177 Avg. contig coverage: 1 Consensus contains: A: 53 C: 29 G: 51 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 177 Reads contain 177 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 879 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 167 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 879 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 162 C: 82 G: 56 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 880 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 166 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 880 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 81 C: 65 G: 57 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 881 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 165 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 881 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 117 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 526 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 882 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 164 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 882 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 110 C: 140 G: 123 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 883 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 163 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 883 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 120 C: 84 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 884 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 162 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 884 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 19 C: 15 G: 58 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 885 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 161 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 885 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 74 C: 51 G: 71 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 886 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 160 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 886 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 137 C: 122 G: 94 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 887 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 159 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 887 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 74 C: 98 G: 90 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 888 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 158 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 888 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 98 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 889 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 157 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 889 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 116 C: 106 G: 72 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 890 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 156 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 890 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 134 C: 90 G: 107 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 891 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 155 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 891 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 105 C: 109 G: 123 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 892 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 154 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 892 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 111 C: 103 G: 130 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 893 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 153 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 893 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 87 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 894 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 152 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 894 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 105 C: 118 G: 88 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 895 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 151 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 895 Contig length: 261 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 74 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 261 Reads contain 261 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 896 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 150 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 896 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 897 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 149 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 897 Contig length: 315 Avg. contig coverage: 1 Consensus contains: A: 73 C: 81 G: 72 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 315 Reads contain 315 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 898 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 148 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 898 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 123 C: 92 G: 106 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 899 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 147 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 899 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 83 C: 121 G: 41 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 900 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 146 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 900 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 104 C: 46 G: 53 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 901 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 145 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 901 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 55 C: 25 G: 33 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 902 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 144 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 902 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 112 C: 73 G: 85 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 903 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 143 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 903 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 28 C: 43 G: 30 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 904 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 142 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 904 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 86 G: 84 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 905 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 141 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 905 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 91 C: 163 G: 57 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 906 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 140 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 906 Contig length: 350 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 82 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 350 Reads contain 350 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 907 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 139 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 907 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 86 G: 81 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 908 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 138 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 908 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 145 C: 123 G: 75 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 909 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 137 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 909 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 82 G: 66 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 910 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 136 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 910 Contig length: 232 Avg. contig coverage: 1 Consensus contains: A: 70 C: 45 G: 59 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 232 Reads contain 232 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 911 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 135 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 911 Contig length: 526 Avg. contig coverage: 1 Consensus contains: A: 149 C: 98 G: 141 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 526 Reads contain 526 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 912 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 134 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 912 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 64 C: 27 G: 37 T: 48 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 913 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 133 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 913 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 125 C: 141 G: 76 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 914 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 132 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 914 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 67 C: 100 G: 87 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 915 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 131 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 915 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 82 C: 49 G: 117 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 916 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 130 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 916 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 88 C: 88 G: 121 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 917 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 129 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 917 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 70 C: 36 G: 60 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 918 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 128 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 918 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 118 C: 106 G: 82 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 919 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 127 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 919 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 88 C: 143 G: 69 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 920 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 126 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 920 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 88 C: 83 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 921 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 125 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 921 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 119 C: 109 G: 80 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 922 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 124 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 922 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 128 C: 97 G: 105 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 439 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 923 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 123 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 923 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 146 C: 65 G: 58 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 924 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 122 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 924 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 165 C: 75 G: 68 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 925 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 121 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 925 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 71 C: 86 G: 91 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 926 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 120 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 926 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 114 C: 121 G: 100 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 927 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 119 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 927 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 94 C: 117 G: 122 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 928 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 118 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 928 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 111 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 929 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 117 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 929 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 40 C: 27 G: 31 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 930 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 116 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 930 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 117 G: 87 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 931 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 115 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 931 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 100 C: 77 G: 74 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 932 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 114 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 932 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 67 C: 63 G: 111 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 933 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 113 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 933 Contig length: 547 Avg. contig coverage: 1 Consensus contains: A: 119 C: 151 G: 112 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 547 Reads contain 547 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 934 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 112 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 934 Contig length: 242 Avg. contig coverage: 1 Consensus contains: A: 56 C: 36 G: 81 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 242 Reads contain 242 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 935 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 111 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 935 Contig length: 116 Avg. contig coverage: 1 Consensus contains: A: 37 C: 27 G: 31 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 116 Reads contain 116 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 936 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 110 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 936 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 48 C: 144 G: 79 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 937 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 109 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 937 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 109 C: 101 G: 123 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 938 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 108 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 938 Contig length: 149 Avg. contig coverage: 1 Consensus contains: A: 46 C: 22 G: 40 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 149 Reads contain 149 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 939 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 107 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 939 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 86 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 940 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 106 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 940 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 69 C: 79 G: 86 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 941 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 105 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 941 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 60 C: 29 G: 9 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 942 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 104 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 942 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 51 C: 62 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 943 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 103 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 943 Contig length: 219 Avg. contig coverage: 1 Consensus contains: A: 58 C: 56 G: 64 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 219 Reads contain 219 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 944 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 102 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 944 Contig length: 252 Avg. contig coverage: 1 Consensus contains: A: 72 C: 68 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 252 Reads contain 252 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 945 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 101 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 945 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 46 C: 56 G: 57 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 946 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 100 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 946 Contig length: 103 Avg. contig coverage: 1 Consensus contains: A: 32 C: 22 G: 31 T: 18 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 103 Reads contain 103 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 947 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 99 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 947 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 27 C: 26 G: 31 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 948 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 98 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 948 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 138 C: 91 G: 115 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 949 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 97 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 949 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 162 C: 48 G: 149 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 950 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 96 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 950 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 68 C: 60 G: 51 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 951 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 95 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 951 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 56 C: 65 G: 80 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 952 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 94 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 952 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 47 C: 61 G: 63 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 953 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 93 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 953 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 110 C: 128 G: 120 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 954 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 92 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 954 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 67 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 955 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 91 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 955 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 112 C: 138 G: 107 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 956 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 90 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 956 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 73 C: 49 G: 80 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 957 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 89 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 957 Contig length: 174 Avg. contig coverage: 1 Consensus contains: A: 43 C: 38 G: 56 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 174 Reads contain 174 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 958 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 88 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 958 Contig length: 87 Avg. contig coverage: 1 Consensus contains: A: 19 C: 24 G: 18 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 87 Reads contain 87 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 959 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 87 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 959 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 125 C: 77 G: 49 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 960 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 86 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 960 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 101 C: 68 G: 94 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 961 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 85 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 961 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 144 C: 93 G: 80 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 962 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 84 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 962 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 40 C: 25 G: 39 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 963 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 83 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 963 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 72 C: 46 G: 61 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 964 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 82 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 964 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 82 C: 64 G: 98 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 965 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 81 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 965 Contig length: 240 Avg. contig coverage: 1 Consensus contains: A: 52 C: 54 G: 61 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 240 Reads contain 240 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 966 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 80 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 966 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 132 C: 109 G: 82 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 967 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 79 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 967 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 68 C: 46 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 968 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 78 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 968 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 72 C: 50 G: 60 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 969 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 77 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 969 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 76 C: 72 G: 88 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 337 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 970 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 76 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 970 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 50 C: 32 G: 44 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 971 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 75 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 971 Contig length: 135 Avg. contig coverage: 1 Consensus contains: A: 34 C: 33 G: 38 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 135 Reads contain 135 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 972 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 74 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 972 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 33 C: 39 G: 28 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 973 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 73 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 973 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 25 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 974 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 72 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 974 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 129 C: 75 G: 47 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 975 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 71 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 975 Contig length: 235 Avg. contig coverage: 1 Consensus contains: A: 63 C: 47 G: 58 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 235 Reads contain 235 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 976 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 70 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 976 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 117 C: 61 G: 71 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 977 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 69 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 977 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 151 C: 119 G: 81 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 978 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 68 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 978 Contig length: 248 Avg. contig coverage: 1 Consensus contains: A: 77 C: 51 G: 70 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 248 Reads contain 248 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 979 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 67 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 979 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 112 C: 110 G: 96 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 980 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 66 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 980 Contig length: 306 Avg. contig coverage: 1 Consensus contains: A: 66 C: 45 G: 102 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 306 Reads contain 305 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 981 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 65 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 981 Contig length: 540 Avg. contig coverage: 1 Consensus contains: A: 149 C: 129 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 540 Reads contain 540 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 982 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 64 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 982 Contig length: 185 Avg. contig coverage: 1 Consensus contains: A: 76 C: 27 G: 32 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 185 Reads contain 185 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 983 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 63 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 983 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 984 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 62 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 984 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 65 C: 35 G: 44 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 985 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 61 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 985 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 139 C: 78 G: 134 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 986 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 60 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 986 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 56 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 987 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 59 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 987 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 85 C: 102 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 988 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 58 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 988 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 136 C: 77 G: 76 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 989 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 57 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 989 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 104 T: 172 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 542 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 990 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 56 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 990 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 110 C: 141 G: 94 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 991 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 55 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 991 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 95 C: 111 G: 113 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 992 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 54 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 992 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 107 C: 81 G: 107 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 993 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 53 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 993 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 79 C: 69 G: 96 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 994 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 52 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 994 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 92 C: 60 G: 135 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 995 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 51 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 995 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 87 C: 80 G: 78 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 996 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 50 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 996 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 139 C: 91 G: 175 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 997 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 49 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 997 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 84 C: 94 G: 70 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 998 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 48 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 998 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 71 C: 50 G: 49 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 999 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 47 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 999 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 116 C: 107 G: 45 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1000 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 46 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1000 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 120 C: 63 G: 93 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1001 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 45 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1001 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 104 C: 71 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1002 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 44 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1002 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 87 C: 85 G: 62 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1003 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 43 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1003 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 87 C: 78 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1004 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 42 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1004 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 78 C: 92 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1005 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 41 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1005 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 111 C: 65 G: 114 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1006 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 40 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1006 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 69 G: 81 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1007 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 39 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1007 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 101 C: 109 G: 96 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1008 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 38 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1008 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 90 C: 111 G: 76 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1009 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 37 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1009 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 120 C: 60 G: 70 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1010 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 36 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1010 Contig length: 255 Avg. contig coverage: 1 Consensus contains: A: 59 C: 41 G: 49 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 255 Reads contain 255 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1011 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 35 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1011 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 138 C: 121 G: 82 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1012 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 34 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1012 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 92 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1013 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 33 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1013 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 157 C: 124 G: 76 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1014 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 32 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1014 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 138 C: 54 G: 88 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1015 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 31 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1015 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 105 C: 141 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1016 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 30 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1016 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 158 C: 101 G: 112 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1017 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 29 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1017 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 109 C: 75 G: 107 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1018 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 28 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1018 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 139 C: 93 G: 126 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1019 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 27 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1019 Contig length: 602 Avg. contig coverage: 1 Consensus contains: A: 162 C: 153 G: 164 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 602 Reads contain 602 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1020 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 26 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1020 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 111 C: 72 G: 99 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1021 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 25 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1021 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 100 C: 62 G: 73 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1022 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 24 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1022 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 175 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1023 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 23 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1023 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 124 C: 137 G: 117 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1024 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 22 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1024 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 123 C: 58 G: 84 T: 139 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 404 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1025 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 21 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1025 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 66 C: 77 G: 84 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1026 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 20 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1026 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 126 C: 129 G: 81 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 454 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1027 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 19 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1027 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 103 C: 88 G: 43 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1028 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 18 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1028 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 125 C: 71 G: 73 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1029 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 17 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1029 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 183 C: 98 G: 144 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1030 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 16 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1030 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 82 C: 41 G: 54 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1031 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 15 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1031 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 46 C: 43 G: 59 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1032 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 14 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1032 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 165 C: 113 G: 54 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1033 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 13 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1033 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 106 G: 69 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1034 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 12 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1034 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 125 C: 137 G: 156 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1035 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 11 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1035 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 192 C: 135 G: 118 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1036 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 10 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1036 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 146 C: 119 G: 122 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1037 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 9 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1037 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 93 C: 71 G: 69 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1038 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 8 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1038 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 89 C: 88 G: 97 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1039 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 7 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1039 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 143 C: 136 G: 119 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1040 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 6 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1040 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 93 C: 111 G: 90 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1041 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 5 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1041 Contig length: 580 Avg. contig coverage: 1 Consensus contains: A: 151 C: 125 G: 162 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 580 Reads contain 580 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1042 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 4 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1042 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 131 C: 88 G: 93 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1043 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 3 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1043 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 126 C: 144 G: 87 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1044 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 2 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1044 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 90 C: 72 G: 89 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1045 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1045 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 122 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: remain_log/remain_info_contigstats_pass.1.txt Saving read tag list to file: remain_log/remain_info_readtaglist.1.txt Saving contig tag list to file: remain_log/remain_info_consensustaglist.1.txt Saving project contig<->read list to file: remain_log/remain_info_contigreadlist_pass.1.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: remain_info/remain_info_contigstats.txt Localtime: Thu Jul 15 12:00:00 2010 Saving read tag list to file: remain_info/remain_info_readtaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contig tag list to file: remain_info/remain_info_consensustaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project contig<->read list to file: remain_info/remain_info_contigreadlist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to file: remain_results/remain_out.caf Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to directory: remain_results/remain_out.gap4da (first deleting old directory) (now creating new directory) (saving contigs) Done. Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to FASTA file: remain_results/remain_out.unpadded.fasta Saving padded contigs to FASTA file: remain_results/remain_out.padded.fasta Saving contig qualities to FASTA quality file: remain_results/remain_out.unpadded.fasta.qual Saving padded contig qualities to FASTA quality file: remain_results/remain_out.padded.fasta.qual Localtime: Thu Jul 15 12:00:00 2010 Saving SNP analysis to file: remain_info/remain_info_snpanalysis.txt Finished assembly, extracting contigs. Closing step2out. Closing step2strout. Done with step 2. Starting step 3: clustering contigs finding possible allelic variances finding possible allelic variances with SNP Loading parameters from file: me_step3.par Used parameter settings: General (-GE): Project name (pro) : step3 Load job (lj) : CAF file (caf) Filecheck only (fo) : No External quality (eq) : from SCF (scf) Ext. qual. override (eqo) : No Discard reads on e.q. error (droeqe): No Read naming scheme (rns) : Sanger Institute (sanger) Merge with XML trace info (mxti) : No Use template information (uti) : No EST-assembly start step (ess) : 1 Assembly options (-AS): Minimum read length (mrl) : 60 Number of passes (nop) : 1 Skim each pass (sep) : Yes Maximum number of RMB break loops (rbl) : 1 Spoiler detection (sd) : No Last pass only (sdlpo) : Yes Base default quality (bdq) : Yes Use genomic pathfinder (ugpf) : Yes Use emergency search stop (uess) : Yes ESS partner depth (esspd) : 500 Use emergency blacklist (uebl) : Yes Use max. contig build time (umcbt) : No Build time in seconds (bts) : 10000 Strain and backbone options (-SB): Load straindata (lsd) : Yes Load backbone (lb) : No Start backbone usage in pass (sbuip): 1 Backbone strain name (bsn) : (none) Backbone file type (bft) : FASTA file (fasta) Backbone rail length (brl) : 2500 Backbone base quality (bbq) : 0 Also build new contigs (abnc) : Yes Dataprocessing options (-DP): Use read extensions (ure) : No Read extension window length (rewl) : 30 Read extension w. maxerrors (rewme) : 2 First extension in pass (feip) : 0 Last extension in pass (leip) : 0 Tag poly A/T at ends (tpae) : Yes Polybase window length (pbwl) : 7 Polybase window maxerrors (pbwme) : 2 Polyb. window grace distance (pbwgc): 9 Clipping options (-CL): Possible vector leftover clip (pvc) : No maximum len allowed (pvcmla) : 12 Quality clip (qc) : Yes Minimum quality (qcmq) : 20 Window length (qcwl) : 30 Masked bases clip (mbc) : Yes Gap size (mbcgs) : 15 Max front gap (mbcmfg) : 30 Max end gap (mbcmeg) : 60 Ensure minimum left clip (emlc) : No Minimum left clip req. (mlcr) : 25 Set minimum left clip to (smlc) : 30 Parameters for SKIM algorithm (-SK): Bases per hash (bph) : 16 Hash save stepping (hss) : 4 Percent required (pr) : 25 Maximum hashes in memory (mhim) : 15000000 Max hits per read (mhpr) : 200 Align parameters for Smith-Waterman align (-AL): Bandwidth in percent (bip) : 15 Bandwidth max (bmax) : 100 Bandwidth min (bmin) : 25 Minimum score (ms) : 30 Minimum overlap (mo) : 30 Minimum relative score in % (mrs) : 75 Extra gap penalty (egp) : Yes extra gap penalty level (egpl) : est_splitsplices Max. egp in percent (megpp) : 100 Contig parameters (-CO): Name prefix (np) : step3 Error analysis (an) : SCF signal (signal) Reject on drop in relative alignment score (%) : 12 Max. error rate in dangerous zones in % (dmer) : 1 Mark repeats (mr) : Yes Assume SNP instead of repeats (asir) : Yes Minimum reads per group needed for tagging (mrpg) : 1 Minimum neighbour quality needed for tagging (mnq) : 20 Minimum Group Quality needed for RMB Tagging (mgqrt) : 30 End-read Marking Exclusion Area in bases (emea) : 9 Also mark gap bases (amgb) : Yes Also mark gap bases - even multicolumn (amgbemc) : Yes Also mark gap bases - need both strands (amgbnbs): Yes Default template insert size minimum (dismin) : 500 Default template insert size maximum (dismax) : 5000 Edit options (-ED): Automatic contig editing (ace) : No Strict editing mode (sem) : No Confirmation threshold in percent (ct): 50 Directories (-DI): When loading EXP files: When loading SCF files: For writing log files : step3_log For writing gap4 DA res.: step3_out Input files (-FI): When loading EXP fofn : step3_in.fofn When loading project from PHD : step3_in.phd.1 When loading project from CAF : step2_reads.caf When loading sequences from FASTA : step3_in.fasta When loading qualities from FASTA quality: step3_in.fasta.qual When loading straindata : step2_straindata.txt When loading XML trace info files : step3_traceinfo_in.xml When loading backbone from CAF : step3_backbone_in.caf When loading backbone from GenBank : step3_backbone_in.gbf When loading backbone from FASTA : step3_backbone_in.fasta Output files (-OUTPUT/-OUT): Result files: Saved as CAF (orc): Yes Saved as FASTA (orf): Yes Saved as GAP4 (directed assembly) (org): Yes Saved as phrap ACE (ora): No Saved as HTML (orh): No Saved as Transposed Contig Summary (ors): No Saved as simple text format (ort): No Temporary result files: Saved as CAF (otc): No Saved as FASTA (otf): No Saved as GAP4 (directed assembly) (otg): No Saved as phrap ACE (ota): No Saved as HTML (oth): No Saved as Transposed Contig Summary(ots): No Saved as simple text format (ott): No Extended temporary result files: Saved as CAF (oetc): No Saved as FASTA (oetf): No Saved as GAP4 (directed assembly) (oetg): No Saved as phrap ACE (oeta): No Saved as HTML (oeth): No Save also singlets (oetas): No Alignment output customisation: TEXT characters per line (tcpl): 60 HTML characters per line (hcpl): 60 TEXT characters per line (tegfc): ' ' HTML characters per line (hegfc): ' ' File / directory names: CAF : step3_out.caf FASTA : step3_out.unpadded.fasta FASTA quality : step3_out.unpadded.fasta.qual FASTA (padded) : step3_out.padded.fasta FASTA qual.(pad): step3_out.padded.fasta.qual GAP4 (directory): step3_out.gap4da ACE : step3_out.ace HTML : step3_out.html Simple text : step3_out.txt TCS overview : step3_out.tcs Creating directory step3_log ... done. Creating directory step3_results ... done. Creating directory step3_info ... done. Localtime: Thu Jul 15 12:00:00 2010 Loading project from CAF file: step2_reads.caf [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Loading straindata. Building hash table ... done. Read 1426 straindata lines. Pool has 1426 reads . Checking reads for trace data: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] No SCF data present in any read, automatic contig editing is now switched off. 1426 reads with valid data for assembly. For the reads that are neither backbones nor rails: - 0 reads have not enough good bases for assembly. - 1426 reads used for assembly. - 0 reads have no real quality (see miralog.noqualities). - mean length of good parts of used reads: 415 Localtime: Thu Jul 15 12:00:00 2010 Generated 1426 unique template ids for 1426 valid reads. No useful template information found, template routines will not be used. Localtime: Thu Jul 15 12:00:00 2010 Seeing strain 1: "default" Seeing strain 2: "remain" Generated 2 unique strain ids for 1426 reads. Tagging poly A/T stretches at ends of reads. Localtime: Thu Jul 15 12:00:00 2010 Searching for possible overlaps: Localtime: Thu Jul 15 12:00:00 2010 We will get 1 partitions. Progressend: 2852 Now running partitioned skimmer with 1 partitions: Working on partition 1/1 Will contain read IDs 0 to 1425 [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Total megahubs: 0 Skim summary: accepted: 1333 possible: 369765 permbans: 0 Hits chosen: 1245 Localtime: Thu Jul 15 12:00:00 2010 Pass: 1 Making alignments. Localtime: Thu Jul 15 12:00:00 2010 Aligning possible forward matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Aligning possible complement matches: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Loading confirmed overlaps from disk (will need approximately 1 M.): [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Sorting confirmed overlaps (this may take a while) ... done. Generating clusters: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%] Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1426 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1 Contig length: 512 Avg. contig coverage: 1.7 Consensus contains: A: 126 C: 118 G: 103 T: 164 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 435 Reads contain 871 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 1 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 2 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1424 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 2 Contig length: 568 Avg. contig coverage: 1.71 Consensus contains: A: 122 C: 151 G: 119 T: 165 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 2 Avg. read length: 487 Reads contain 975 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 8 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 3 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1422 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 3 Contig length: 911 Avg. contig coverage: 1.52 Consensus contains: A: 255 C: 243 G: 179 T: 219 N: 0 IUPAC: 11 Funny: 0 *: 4 Num reads: 2 Avg. read length: 694 Reads contain 1384 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 9 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 4 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1420 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 4 Contig length: 490 Avg. contig coverage: 1.82 Consensus contains: A: 136 C: 126 G: 114 T: 106 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 2 Avg. read length: 447 Reads contain 895 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 7 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 5 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1418 +[1] +a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 5 Contig length: 678 Avg. contig coverage: 1.52 Consensus contains: A: 153 C: 183 G: 171 T: 161 N: 0 IUPAC: 8 Funny: 0 *: 2 Num reads: 2 Avg. read length: 516 Reads contain 1028 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 6 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 6 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1416 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 6 Contig length: 607 Avg. contig coverage: 1.8 Consensus contains: A: 141 C: 156 G: 174 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 3 Num reads: 2 Avg. read length: 546 Reads contain 1087 bases, 1 Ns and 5 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 2 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 7 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1414 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 7 Contig length: 549 Avg. contig coverage: 1.93 Consensus contains: A: 131 C: 124 G: 172 T: 117 N: 0 IUPAC: 3 Funny: 0 *: 2 Num reads: 2 Avg. read length: 530 Reads contain 1053 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 8 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1412 +[1] ++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 8 Contig length: 511 Avg. contig coverage: 2.95 Consensus contains: A: 93 C: 146 G: 116 T: 133 N: 0 IUPAC: 16 Funny: 0 *: 7 Num reads: 3 Avg. read length: 503 Reads contain 1493 bases, 0 Ns and 16 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 19 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 9 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1409 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 9 Contig length: 620 Avg. contig coverage: 1.7 Consensus contains: A: 134 C: 137 G: 162 T: 167 N: 0 IUPAC: 17 Funny: 0 *: 3 Num reads: 2 Avg. read length: 528 Reads contain 1050 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 20 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 10 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1407 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 10 Contig length: 564 Avg. contig coverage: 1.74 Consensus contains: A: 112 C: 149 G: 120 T: 151 N: 2 IUPAC: 30 Funny: 0 *: 0 Num reads: 2 Avg. read length: 492 Reads contain 978 bases, 4 Ns and 3 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 27 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 11 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1405 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 11 Contig length: 386 Avg. contig coverage: 1.78 Consensus contains: A: 99 C: 112 G: 94 T: 77 N: 0 IUPAC: 3 Funny: 0 *: 1 Num reads: 2 Avg. read length: 344 Reads contain 686 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 2 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 12 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1403 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 12 Contig length: 490 Avg. contig coverage: 1.65 Consensus contains: A: 138 C: 134 G: 74 T: 126 N: 0 IUPAC: 18 Funny: 0 *: 0 Num reads: 2 Avg. read length: 406 Reads contain 808 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 19 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 13 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1401 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 13 Contig length: 562 Avg. contig coverage: 1.59 Consensus contains: A: 144 C: 119 G: 148 T: 144 N: 0 IUPAC: 4 Funny: 0 *: 3 Num reads: 2 Avg. read length: 447 Reads contain 891 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 6 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 14 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1399 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 14 Contig length: 587 Avg. contig coverage: 1.44 Consensus contains: A: 149 C: 147 G: 115 T: 165 N: 0 IUPAC: 8 Funny: 0 *: 3 Num reads: 2 Avg. read length: 425 Reads contain 844 bases, 0 Ns and 7 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 12 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 15 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1397 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 15 Contig length: 253 Avg. contig coverage: 1.71 Consensus contains: A: 62 C: 52 G: 75 T: 63 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 2 Avg. read length: 217 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 1 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 16 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1395 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 16 Contig length: 504 Avg. contig coverage: 1.47 Consensus contains: A: 119 C: 134 G: 96 T: 133 N: 0 IUPAC: 21 Funny: 0 *: 1 Num reads: 2 Avg. read length: 371 Reads contain 741 bases, 0 Ns and 2 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 11 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 17 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1393 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 17 Contig length: 377 Avg. contig coverage: 1.23 Consensus contains: A: 98 C: 103 G: 73 T: 96 N: 0 IUPAC: 7 Funny: 0 *: 0 Num reads: 2 Avg. read length: 233 Reads contain 465 bases, 0 Ns and 1 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 1 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 18 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1391 +[1] +++a RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 18 Contig length: 738 Avg. contig coverage: 2.69 Consensus contains: A: 172 C: 182 G: 174 T: 175 N: 0 IUPAC: 29 Funny: 0 *: 6 Num reads: 4 Avg. read length: 497 Reads contain 1979 bases, 1 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 23 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 19 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1387 +[1] +++ RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 19 Contig length: 703 Avg. contig coverage: 2.28 Consensus contains: A: 184 C: 158 G: 171 T: 142 N: 1 IUPAC: 43 Funny: 0 *: 4 Num reads: 4 Avg. read length: 401 Reads contain 1589 bases, 1 Ns and 16 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 40 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 20 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1383 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 20 Contig length: 509 Avg. contig coverage: 1.83 Consensus contains: A: 121 C: 118 G: 116 T: 148 N: 0 IUPAC: 3 Funny: 0 *: 3 Num reads: 2 Avg. read length: 467 Reads contain 931 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 2 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 21 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1381 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 21 Contig length: 767 Avg. contig coverage: 1.64 Consensus contains: A: 169 C: 193 G: 172 T: 195 N: 0 IUPAC: 38 Funny: 0 *: 0 Num reads: 2 Avg. read length: 630 Reads contain 1259 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 38 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 22 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1379 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 22 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 106 C: 114 G: 100 T: 95 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 23 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1378 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 23 Contig length: 565 Avg. contig coverage: 1.76 Consensus contains: A: 134 C: 108 G: 146 T: 150 N: 0 IUPAC: 18 Funny: 0 *: 9 Num reads: 2 Avg. read length: 499 Reads contain 987 bases, 0 Ns and 11 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 20 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 24 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1376 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 24 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 100 C: 116 G: 96 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 25 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1375 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 25 Contig length: 628 Avg. contig coverage: 1.25 Consensus contains: A: 176 C: 133 G: 149 T: 160 N: 3 IUPAC: 6 Funny: 0 *: 1 Num reads: 2 Avg. read length: 395 Reads contain 783 bases, 3 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 9 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 26 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1373 +[1] + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 26 Contig length: 838 Avg. contig coverage: 1.18 Consensus contains: A: 204 C: 193 G: 213 T: 224 N: 0 IUPAC: 1 Funny: 0 *: 3 Num reads: 2 Avg. read length: 497 Reads contain 990 bases, 0 Ns and 4 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Marking possibly misassembled repeats ...done. Found - 0 Strong RMB - 0 Weak RMB - 1 SNP positions tagged.Transfering contig RMB permanent pair bans. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 27 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1371 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 27 Contig length: 609 Avg. contig coverage: 1 Consensus contains: A: 145 C: 129 G: 156 T: 158 N: 0 IUPAC: 21 Funny: 0 *: 0 Num reads: 1 Avg. read length: 609 Reads contain 609 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 28 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1370 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 28 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 125 C: 75 G: 114 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 29 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1369 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 29 Contig length: 562 Avg. contig coverage: 1 Consensus contains: A: 168 C: 112 G: 146 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 562 Reads contain 562 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 30 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1368 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 30 Contig length: 698 Avg. contig coverage: 1 Consensus contains: A: 160 C: 159 G: 204 T: 173 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 698 Reads contain 698 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 31 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1367 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 31 Contig length: 638 Avg. contig coverage: 1 Consensus contains: A: 169 C: 179 G: 122 T: 163 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 638 Reads contain 638 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 32 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1366 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 32 Contig length: 589 Avg. contig coverage: 1 Consensus contains: A: 128 C: 189 G: 110 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 589 Reads contain 589 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 33 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1365 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 33 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 113 C: 73 G: 91 T: 129 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 34 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1364 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 34 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 132 C: 128 G: 116 T: 119 N: 0 IUPAC: 7 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 35 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1363 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 35 Contig length: 602 Avg. contig coverage: 1 Consensus contains: A: 155 C: 151 G: 135 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 602 Reads contain 602 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 36 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1362 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 36 Contig length: 624 Avg. contig coverage: 1 Consensus contains: A: 155 C: 122 G: 175 T: 171 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 624 Reads contain 624 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 37 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1361 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 37 Contig length: 462 Avg. contig coverage: 1 Consensus contains: A: 106 C: 89 G: 113 T: 153 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 462 Reads contain 462 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 38 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1360 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 38 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 118 C: 151 G: 78 T: 114 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 39 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1359 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 39 Contig length: 677 Avg. contig coverage: 1 Consensus contains: A: 174 C: 134 G: 187 T: 181 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 677 Reads contain 677 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 40 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1358 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 40 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 124 C: 105 G: 102 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 41 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1357 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 41 Contig length: 694 Avg. contig coverage: 1 Consensus contains: A: 198 C: 173 G: 138 T: 185 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 694 Reads contain 694 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 42 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1356 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 42 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 143 C: 133 G: 137 T: 125 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 43 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1355 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 43 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 155 C: 134 G: 133 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 44 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1354 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 44 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 131 C: 93 G: 126 T: 136 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 45 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1353 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 45 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 143 C: 129 G: 78 T: 150 N: 0 IUPAC: 18 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 46 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1352 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 46 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 133 C: 147 G: 100 T: 153 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 47 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1351 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 47 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 152 C: 128 G: 91 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 48 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1350 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 48 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 86 C: 104 G: 85 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 49 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1349 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 49 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 125 C: 121 G: 92 T: 109 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 50 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1348 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 50 Contig length: 589 Avg. contig coverage: 1 Consensus contains: A: 185 C: 139 G: 113 T: 151 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 589 Reads contain 589 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 51 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1347 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 51 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 138 C: 148 G: 102 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 511 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 52 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1346 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 52 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 109 C: 114 G: 116 T: 209 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 53 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1345 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 53 Contig length: 526 Avg. contig coverage: 1 Consensus contains: A: 160 C: 119 G: 125 T: 117 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 526 Reads contain 526 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 54 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1344 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 54 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 136 C: 126 G: 126 T: 127 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 55 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1343 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 55 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 84 C: 96 G: 86 T: 115 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 56 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1342 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 56 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 178 C: 145 G: 103 T: 136 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 57 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1341 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 57 Contig length: 414 Avg. contig coverage: 1 Consensus contains: A: 95 C: 127 G: 87 T: 104 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 414 Reads contain 414 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 58 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1340 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 58 Contig length: 572 Avg. contig coverage: 1 Consensus contains: A: 194 C: 113 G: 109 T: 154 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 572 Reads contain 570 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 59 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1339 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 59 Contig length: 621 Avg. contig coverage: 1 Consensus contains: A: 164 C: 163 G: 128 T: 158 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 1 Avg. read length: 621 Reads contain 621 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 60 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1338 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 60 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 80 C: 117 G: 103 T: 101 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 410 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 61 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1337 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 61 Contig length: 693 Avg. contig coverage: 1 Consensus contains: A: 225 C: 180 G: 119 T: 168 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 693 Reads contain 693 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 62 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1336 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 62 Contig length: 449 Avg. contig coverage: 1 Consensus contains: A: 100 C: 132 G: 115 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 449 Reads contain 449 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 63 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1335 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 63 Contig length: 608 Avg. contig coverage: 1 Consensus contains: A: 184 C: 118 G: 156 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 608 Reads contain 608 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 64 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1334 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 64 Contig length: 482 Avg. contig coverage: 1 Consensus contains: A: 99 C: 131 G: 103 T: 148 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 482 Reads contain 482 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 65 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1333 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 65 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 114 C: 86 G: 89 T: 107 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 66 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1332 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 66 Contig length: 924 Avg. contig coverage: 1 Consensus contains: A: 277 C: 178 G: 187 T: 281 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 924 Reads contain 924 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 67 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1331 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 67 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 130 C: 142 G: 144 T: 124 N: 0 IUPAC: 29 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 68 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1330 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 68 Contig length: 584 Avg. contig coverage: 1 Consensus contains: A: 180 C: 139 G: 109 T: 143 N: 0 IUPAC: 13 Funny: 0 *: 0 Num reads: 1 Avg. read length: 584 Reads contain 584 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 69 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1329 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 69 Contig length: 937 Avg. contig coverage: 1 Consensus contains: A: 253 C: 280 G: 185 T: 218 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 937 Reads contain 937 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 70 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1328 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 70 Contig length: 597 Avg. contig coverage: 1 Consensus contains: A: 156 C: 131 G: 133 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 597 Reads contain 597 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 71 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1327 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 71 Contig length: 637 Avg. contig coverage: 1 Consensus contains: A: 107 C: 187 G: 104 T: 239 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 637 Reads contain 637 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 72 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1326 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 72 Contig length: 520 Avg. contig coverage: 1 Consensus contains: A: 140 C: 112 G: 127 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 520 Reads contain 520 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 73 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1325 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 73 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 91 C: 93 G: 151 T: 89 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 74 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1324 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 74 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 138 C: 100 G: 54 T: 84 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 75 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1323 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 75 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 100 C: 106 G: 137 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 76 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1322 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 76 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 146 C: 100 G: 109 T: 124 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 77 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1321 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 77 Contig length: 1030 Avg. contig coverage: 1 Consensus contains: A: 246 C: 212 G: 296 T: 275 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 1030 Reads contain 1030 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 78 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1320 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 78 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 164 C: 125 G: 100 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 79 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1319 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 79 Contig length: 664 Avg. contig coverage: 1 Consensus contains: A: 182 C: 166 G: 137 T: 178 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 664 Reads contain 664 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 80 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1318 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 80 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 159 C: 141 G: 119 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 81 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1317 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 81 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 165 C: 112 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 82 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1316 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 82 Contig length: 368 Avg. contig coverage: 1 Consensus contains: A: 95 C: 89 G: 69 T: 110 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 368 Reads contain 368 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 83 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1315 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 83 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 88 C: 71 G: 75 T: 95 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 84 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1314 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 84 Contig length: 761 Avg. contig coverage: 1 Consensus contains: A: 227 C: 170 G: 146 T: 210 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 1 Avg. read length: 761 Reads contain 761 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 85 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1313 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 85 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 154 C: 112 G: 126 T: 169 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 86 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1312 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 86 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 132 C: 126 G: 141 T: 130 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 530 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 87 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1311 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 87 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 143 C: 84 G: 106 T: 154 N: 1 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 489 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 88 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1310 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 88 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 114 C: 144 G: 84 T: 129 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 89 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1309 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 89 Contig length: 562 Avg. contig coverage: 1 Consensus contains: A: 119 C: 138 G: 142 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 562 Reads contain 562 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 90 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1308 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 90 Contig length: 857 Avg. contig coverage: 1 Consensus contains: A: 233 C: 160 G: 190 T: 272 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 857 Reads contain 857 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 91 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1307 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 91 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 167 C: 109 G: 142 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 92 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1306 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 92 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 141 C: 138 G: 115 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 522 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 93 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1305 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 93 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 88 C: 90 G: 90 T: 94 N: 0 IUPAC: 19 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 94 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1304 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 94 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 120 C: 84 G: 93 T: 69 N: 0 IUPAC: 22 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 95 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1303 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 95 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 164 C: 124 G: 75 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 96 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1302 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 96 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 146 C: 92 G: 133 T: 167 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 97 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1301 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 97 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 116 C: 125 G: 90 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 98 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1300 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 98 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 62 C: 85 G: 116 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 99 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1299 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 99 Contig length: 504 Avg. contig coverage: 1 Consensus contains: A: 128 C: 126 G: 91 T: 158 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 504 Reads contain 504 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1298 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 100 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 109 C: 118 G: 127 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1297 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 101 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 134 C: 90 G: 118 T: 122 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1296 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 102 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 67 C: 84 G: 122 T: 96 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1295 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 103 Contig length: 508 Avg. contig coverage: 1 Consensus contains: A: 159 C: 97 G: 128 T: 123 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 508 Reads contain 508 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1294 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 104 Contig length: 591 Avg. contig coverage: 1 Consensus contains: A: 142 C: 121 G: 180 T: 145 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 591 Reads contain 591 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1293 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 105 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 139 C: 103 G: 128 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1292 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 106 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 149 C: 119 G: 138 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1291 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 107 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 132 C: 121 G: 95 T: 140 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1290 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 108 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 153 C: 126 G: 111 T: 150 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1289 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 109 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 146 C: 92 G: 82 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1288 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 110 Contig length: 611 Avg. contig coverage: 1 Consensus contains: A: 132 C: 203 G: 81 T: 195 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 611 Reads contain 611 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1287 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 111 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 113 C: 122 G: 105 T: 115 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1286 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 112 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 77 C: 125 G: 102 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1285 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 113 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 97 C: 114 G: 124 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1284 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 114 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 167 C: 94 G: 75 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1283 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 115 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 143 C: 131 G: 168 T: 132 N: 0 IUPAC: 13 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1282 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 116 Contig length: 482 Avg. contig coverage: 1 Consensus contains: A: 128 C: 129 G: 106 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 482 Reads contain 482 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1281 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 117 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 124 C: 115 G: 88 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1280 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 118 Contig length: 516 Avg. contig coverage: 1 Consensus contains: A: 158 C: 82 G: 122 T: 137 N: 0 IUPAC: 17 Funny: 0 *: 0 Num reads: 1 Avg. read length: 516 Reads contain 516 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1279 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 119 Contig length: 513 Avg. contig coverage: 1 Consensus contains: A: 119 C: 129 G: 132 T: 132 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 513 Reads contain 513 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1278 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 120 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 135 C: 128 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1277 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 121 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 125 C: 99 G: 140 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1276 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 122 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 138 C: 176 G: 114 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1275 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 123 Contig length: 540 Avg. contig coverage: 1 Consensus contains: A: 124 C: 150 G: 108 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 540 Reads contain 540 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1274 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 124 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 123 C: 105 G: 130 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1273 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 125 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 150 C: 108 G: 132 T: 144 N: 1 IUPAC: 10 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1272 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 126 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 94 C: 97 G: 117 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1271 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 127 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 139 C: 93 G: 104 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1270 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 128 Contig length: 397 Avg. contig coverage: 1 Consensus contains: A: 142 C: 92 G: 64 T: 98 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 397 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1269 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 129 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 152 C: 135 G: 113 T: 178 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1268 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 130 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 64 C: 120 G: 99 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1267 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 131 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 114 C: 119 G: 67 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 420 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1266 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 132 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 125 C: 93 G: 98 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1265 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 133 Contig length: 889 Avg. contig coverage: 1 Consensus contains: A: 246 C: 191 G: 210 T: 234 N: 0 IUPAC: 8 Funny: 0 *: 0 Num reads: 1 Avg. read length: 889 Reads contain 889 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1264 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 134 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 159 C: 145 G: 88 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1263 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 135 Contig length: 575 Avg. contig coverage: 1 Consensus contains: A: 150 C: 108 G: 151 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 575 Reads contain 575 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1262 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 136 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 123 C: 130 G: 144 T: 113 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1261 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 137 Contig length: 607 Avg. contig coverage: 1 Consensus contains: A: 132 C: 155 G: 162 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 607 Reads contain 607 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1260 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 138 Contig length: 598 Avg. contig coverage: 1 Consensus contains: A: 118 C: 145 G: 173 T: 150 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 1 Avg. read length: 598 Reads contain 598 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1259 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 139 Contig length: 660 Avg. contig coverage: 1 Consensus contains: A: 172 C: 126 G: 155 T: 185 N: 0 IUPAC: 22 Funny: 0 *: 0 Num reads: 1 Avg. read length: 660 Reads contain 660 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1258 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 140 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 67 C: 88 G: 82 T: 121 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 359 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1257 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 141 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 93 C: 86 G: 119 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1256 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 142 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 131 C: 105 G: 119 T: 109 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1255 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 143 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 159 C: 122 G: 56 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1254 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 144 Contig length: 337 Avg. contig coverage: 1 Consensus contains: A: 78 C: 83 G: 68 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 337 Reads contain 337 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1253 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 145 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 123 C: 95 G: 108 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1252 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 146 Contig length: 570 Avg. contig coverage: 1 Consensus contains: A: 161 C: 143 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 570 Reads contain 570 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1251 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 147 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 120 C: 110 G: 111 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1250 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 148 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 111 C: 86 G: 45 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1249 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 149 Contig length: 659 Avg. contig coverage: 1 Consensus contains: A: 182 C: 186 G: 122 T: 164 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 659 Reads contain 659 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1248 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 150 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 90 C: 54 G: 86 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1247 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 151 Contig length: 668 Avg. contig coverage: 1 Consensus contains: A: 195 C: 130 G: 164 T: 157 N: 0 IUPAC: 22 Funny: 0 *: 0 Num reads: 1 Avg. read length: 668 Reads contain 668 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1246 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 152 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 146 C: 96 G: 166 T: 183 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 592 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1245 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 153 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 119 C: 74 G: 48 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1244 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 154 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 106 C: 87 G: 60 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1243 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 155 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 87 C: 83 G: 79 T: 88 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 338 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1242 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 156 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 118 C: 87 G: 104 T: 143 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1241 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 157 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 87 C: 77 G: 124 T: 68 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1240 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 158 Contig length: 624 Avg. contig coverage: 1 Consensus contains: A: 133 C: 152 G: 132 T: 206 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 624 Reads contain 624 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1239 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 159 Contig length: 395 Avg. contig coverage: 1 Consensus contains: A: 105 C: 99 G: 97 T: 93 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 395 Reads contain 395 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1238 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 160 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 109 C: 95 G: 91 T: 119 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1237 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 161 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 117 C: 148 G: 122 T: 126 N: 0 IUPAC: 10 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1236 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 162 Contig length: 547 Avg. contig coverage: 1 Consensus contains: A: 150 C: 145 G: 104 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 547 Reads contain 547 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1235 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 163 Contig length: 383 Avg. contig coverage: 1 Consensus contains: A: 118 C: 54 G: 74 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 383 Reads contain 383 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1234 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 164 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 145 C: 47 G: 69 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1233 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 165 Contig length: 654 Avg. contig coverage: 1 Consensus contains: A: 216 C: 144 G: 124 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 654 Reads contain 654 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1232 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 166 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 128 C: 123 G: 134 T: 132 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1231 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 167 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 118 C: 65 G: 87 T: 121 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1230 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 168 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 68 C: 90 G: 62 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1229 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 169 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 158 C: 116 G: 140 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 577 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1228 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 170 Contig length: 666 Avg. contig coverage: 1 Consensus contains: A: 169 C: 167 G: 145 T: 183 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 666 Reads contain 666 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1227 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 171 Contig length: 635 Avg. contig coverage: 1 Consensus contains: A: 179 C: 157 G: 106 T: 188 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 635 Reads contain 635 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1226 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 172 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 121 C: 115 G: 100 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1225 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 173 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 161 C: 119 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1224 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 174 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 153 C: 101 G: 73 T: 114 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1223 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 175 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 135 C: 96 G: 102 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1222 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 176 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 104 C: 113 G: 122 T: 149 N: 0 IUPAC: 27 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1221 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 177 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 160 C: 155 G: 108 T: 170 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1220 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 178 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 128 C: 108 G: 75 T: 110 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1219 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 179 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 108 C: 77 G: 132 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1218 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 180 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 124 C: 110 G: 41 T: 115 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 390 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1217 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 181 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 82 C: 65 G: 103 T: 78 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1216 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 182 Contig length: 362 Avg. contig coverage: 1 Consensus contains: A: 117 C: 99 G: 48 T: 97 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 362 Reads contain 362 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1215 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 183 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 119 C: 108 G: 111 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 479 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1214 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 184 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 117 C: 103 G: 76 T: 96 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 393 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1213 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 185 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 91 C: 66 G: 94 T: 98 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1212 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 186 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 116 C: 84 G: 179 T: 143 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 522 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1211 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 187 Contig length: 368 Avg. contig coverage: 1 Consensus contains: A: 84 C: 89 G: 84 T: 110 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 368 Reads contain 368 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1210 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 188 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 112 C: 119 G: 82 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1209 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 189 Contig length: 395 Avg. contig coverage: 1 Consensus contains: A: 89 C: 83 G: 112 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 395 Reads contain 394 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1208 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 190 Contig length: 301 Avg. contig coverage: 1 Consensus contains: A: 91 C: 68 G: 52 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 301 Reads contain 301 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1207 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 191 Contig length: 596 Avg. contig coverage: 1 Consensus contains: A: 101 C: 206 G: 160 T: 119 N: 0 IUPAC: 10 Funny: 0 *: 0 Num reads: 1 Avg. read length: 596 Reads contain 596 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1206 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 192 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 123 C: 131 G: 77 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1205 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 193 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 102 C: 76 G: 91 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1204 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 194 Contig length: 275 Avg. contig coverage: 1 Consensus contains: A: 81 C: 53 G: 77 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 275 Reads contain 275 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1203 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 195 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 84 T: 90 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1202 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 196 Contig length: 594 Avg. contig coverage: 1 Consensus contains: A: 158 C: 155 G: 111 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 1 Avg. read length: 594 Reads contain 594 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1201 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 197 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 93 C: 81 G: 97 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 400 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1200 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 198 Contig length: 751 Avg. contig coverage: 1 Consensus contains: A: 203 C: 147 G: 179 T: 222 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 751 Reads contain 751 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1199 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 199 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 94 C: 98 G: 80 T: 126 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1198 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 200 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 90 C: 74 G: 143 T: 106 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1197 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 201 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 132 C: 134 G: 55 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1196 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 202 Contig length: 664 Avg. contig coverage: 1 Consensus contains: A: 181 C: 179 G: 141 T: 161 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 664 Reads contain 664 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1195 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 203 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 132 C: 115 G: 95 T: 157 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1194 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 204 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 123 C: 127 G: 92 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1193 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 205 Contig length: 673 Avg. contig coverage: 1 Consensus contains: A: 172 C: 152 G: 159 T: 170 N: 0 IUPAC: 20 Funny: 0 *: 0 Num reads: 1 Avg. read length: 673 Reads contain 673 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1192 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 206 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 179 C: 125 G: 100 T: 139 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 544 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1191 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 207 Contig length: 462 Avg. contig coverage: 1 Consensus contains: A: 124 C: 114 G: 102 T: 120 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 462 Reads contain 461 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1190 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 208 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 138 C: 144 G: 98 T: 119 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1189 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 209 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 132 C: 128 G: 108 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 510 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1188 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 210 Contig length: 449 Avg. contig coverage: 1 Consensus contains: A: 128 C: 119 G: 98 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 449 Reads contain 449 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1187 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 211 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 204 C: 138 G: 81 T: 125 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 548 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1186 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 212 Contig length: 380 Avg. contig coverage: 1 Consensus contains: A: 103 C: 92 G: 81 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 380 Reads contain 380 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1185 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 213 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 110 C: 123 G: 94 T: 114 N: 0 IUPAC: 25 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1184 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 214 Contig length: 504 Avg. contig coverage: 1 Consensus contains: A: 165 C: 91 G: 91 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 504 Reads contain 504 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1183 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 215 Contig length: 604 Avg. contig coverage: 1 Consensus contains: A: 185 C: 132 G: 117 T: 167 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 604 Reads contain 604 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1182 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 216 Contig length: 599 Avg. contig coverage: 1 Consensus contains: A: 158 C: 147 G: 123 T: 164 N: 1 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 599 Reads contain 598 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1181 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 217 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 111 C: 119 G: 113 T: 129 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1180 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 218 Contig length: 313 Avg. contig coverage: 1 Consensus contains: A: 74 C: 79 G: 94 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 313 Reads contain 313 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1179 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 219 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 125 C: 101 G: 140 T: 106 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1178 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 220 Contig length: 612 Avg. contig coverage: 1 Consensus contains: A: 154 C: 168 G: 130 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 612 Reads contain 612 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1177 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 221 Contig length: 619 Avg. contig coverage: 1 Consensus contains: A: 146 C: 142 G: 161 T: 155 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 1 Avg. read length: 619 Reads contain 619 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1176 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 222 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 153 C: 112 G: 132 T: 120 N: 0 IUPAC: 18 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1175 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 223 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 135 C: 144 G: 108 T: 98 N: 3 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 486 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1174 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 224 Contig length: 845 Avg. contig coverage: 1 Consensus contains: A: 225 C: 187 G: 178 T: 244 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 1 Avg. read length: 845 Reads contain 845 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1173 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 225 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 124 C: 125 G: 125 T: 160 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 534 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1172 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 226 Contig length: 842 Avg. contig coverage: 1 Consensus contains: A: 260 C: 172 G: 170 T: 240 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 842 Reads contain 842 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1171 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 227 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 114 C: 103 G: 76 T: 90 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1170 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 228 Contig length: 274 Avg. contig coverage: 1 Consensus contains: A: 101 C: 60 G: 57 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 274 Reads contain 274 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1169 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 229 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 91 C: 69 G: 85 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1168 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 230 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 141 C: 106 G: 120 T: 155 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1167 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 231 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 157 C: 61 G: 124 T: 166 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1166 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 232 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 113 C: 103 G: 82 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1165 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 233 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 102 C: 82 G: 36 T: 78 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 298 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1164 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 234 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 131 C: 111 G: 89 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1163 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 235 Contig length: 729 Avg. contig coverage: 1 Consensus contains: A: 186 C: 164 G: 176 T: 200 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 729 Reads contain 729 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1162 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 236 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 150 C: 86 G: 37 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1161 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 237 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 145 C: 93 G: 102 T: 103 N: 0 IUPAC: 14 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1160 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 238 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 146 C: 91 G: 129 T: 116 N: 3 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 483 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1159 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 239 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 136 C: 82 G: 77 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1158 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 240 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 101 C: 104 G: 98 T: 107 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1157 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 241 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 164 C: 86 G: 131 T: 118 N: 0 IUPAC: 15 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1156 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 242 Contig length: 280 Avg. contig coverage: 1 Consensus contains: A: 70 C: 58 G: 79 T: 70 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 280 Reads contain 280 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1155 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 243 Contig length: 450 Avg. contig coverage: 1 Consensus contains: A: 122 C: 115 G: 111 T: 100 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 450 Reads contain 450 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1154 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 244 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 76 C: 106 G: 109 T: 97 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1153 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 245 Contig length: 434 Avg. contig coverage: 1 Consensus contains: A: 108 C: 97 G: 128 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 434 Reads contain 434 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1152 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 246 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 158 C: 121 G: 106 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1151 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 247 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 149 C: 119 G: 102 T: 132 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1150 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 248 Contig length: 572 Avg. contig coverage: 1 Consensus contains: A: 153 C: 167 G: 121 T: 122 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 572 Reads contain 572 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1149 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 249 Contig length: 303 Avg. contig coverage: 1 Consensus contains: A: 85 C: 37 G: 105 T: 74 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 303 Reads contain 303 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1148 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 250 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 117 C: 133 G: 105 T: 122 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1147 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 251 Contig length: 812 Avg. contig coverage: 1 Consensus contains: A: 195 C: 189 G: 234 T: 192 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 812 Reads contain 812 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1146 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 252 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 98 C: 96 G: 152 T: 119 N: 0 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1145 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 253 Contig length: 764 Avg. contig coverage: 1 Consensus contains: A: 209 C: 158 G: 184 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 764 Reads contain 764 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1144 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 254 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 125 C: 133 G: 131 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1143 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 255 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 94 C: 91 G: 142 T: 149 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 479 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1142 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 256 Contig length: 706 Avg. contig coverage: 1 Consensus contains: A: 167 C: 119 G: 210 T: 210 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 706 Reads contain 706 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1141 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 257 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 131 C: 126 G: 93 T: 102 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 454 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1140 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 258 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 69 C: 80 G: 38 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1139 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 259 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 102 C: 74 G: 91 T: 106 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1138 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 260 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 97 C: 85 G: 117 T: 111 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1137 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 261 Contig length: 561 Avg. contig coverage: 1 Consensus contains: A: 175 C: 132 G: 90 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 561 Reads contain 561 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1136 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 262 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 56 C: 35 G: 73 T: 58 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1135 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 263 Contig length: 273 Avg. contig coverage: 1 Consensus contains: A: 76 C: 63 G: 53 T: 80 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 273 Reads contain 273 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1134 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 264 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 136 C: 89 G: 74 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1133 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 265 Contig length: 470 Avg. contig coverage: 1 Consensus contains: A: 115 C: 117 G: 115 T: 120 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 470 Reads contain 470 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1132 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 266 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 94 C: 88 G: 89 T: 94 N: 0 IUPAC: 12 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1131 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 267 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 142 C: 103 G: 106 T: 173 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 530 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1130 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 268 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 131 C: 157 G: 138 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1129 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 269 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 118 C: 84 G: 110 T: 121 N: 0 IUPAC: 14 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1128 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 270 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 158 C: 97 G: 115 T: 138 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 509 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1127 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 271 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 87 C: 84 G: 123 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1126 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 272 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 91 C: 95 G: 54 T: 64 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 304 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1125 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 273 Contig length: 254 Avg. contig coverage: 1 Consensus contains: A: 49 C: 42 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 254 Reads contain 254 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1124 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 274 Contig length: 268 Avg. contig coverage: 1 Consensus contains: A: 103 C: 59 G: 47 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 268 Reads contain 268 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1123 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 275 Contig length: 509 Avg. contig coverage: 1 Consensus contains: A: 139 C: 114 G: 119 T: 136 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 509 Reads contain 509 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1122 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 276 Contig length: 313 Avg. contig coverage: 1 Consensus contains: A: 111 C: 56 G: 66 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 313 Reads contain 313 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1121 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 277 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 106 C: 83 G: 74 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1120 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 278 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 115 C: 64 G: 55 T: 72 N: 0 IUPAC: 13 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1119 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 279 Contig length: 850 Avg. contig coverage: 1 Consensus contains: A: 230 C: 153 G: 219 T: 248 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 850 Reads contain 850 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1118 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 280 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 108 C: 91 G: 116 T: 79 N: 0 IUPAC: 6 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1117 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 281 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 107 C: 91 G: 139 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1116 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 282 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 113 C: 56 G: 115 T: 134 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1115 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 283 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 181 C: 135 G: 112 T: 119 N: 1 IUPAC: 11 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 558 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1114 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 284 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 77 C: 49 G: 120 T: 87 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1113 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 285 Contig length: 213 Avg. contig coverage: 1 Consensus contains: A: 59 C: 98 G: 24 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 213 Reads contain 213 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1112 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 286 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 97 C: 74 G: 67 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1111 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 287 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 132 C: 88 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1110 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 288 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 38 C: 90 G: 69 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1109 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 289 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 131 C: 121 G: 142 T: 140 N: 0 IUPAC: 4 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1108 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 290 Contig length: 700 Avg. contig coverage: 1 Consensus contains: A: 202 C: 170 G: 117 T: 211 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 700 Reads contain 700 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1107 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 291 Contig length: 985 Avg. contig coverage: 1 Consensus contains: A: 252 C: 249 G: 248 T: 236 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 985 Reads contain 985 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1106 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 292 Contig length: 694 Avg. contig coverage: 1 Consensus contains: A: 158 C: 164 G: 170 T: 201 N: 0 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 694 Reads contain 694 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1105 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 293 Contig length: 199 Avg. contig coverage: 1 Consensus contains: A: 46 C: 50 G: 52 T: 49 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 199 Reads contain 199 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1104 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 294 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 125 C: 62 G: 86 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1103 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 295 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 114 C: 100 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1102 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 296 Contig length: 625 Avg. contig coverage: 1 Consensus contains: A: 167 C: 156 G: 126 T: 166 N: 1 IUPAC: 9 Funny: 0 *: 0 Num reads: 1 Avg. read length: 625 Reads contain 624 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1101 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 297 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 119 C: 67 G: 70 T: 94 N: 0 IUPAC: 3 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1100 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 298 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 182 C: 94 G: 57 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1099 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 299 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 208 C: 147 G: 134 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 623 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1098 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 300 Contig length: 309 Avg. contig coverage: 1 Consensus contains: A: 90 C: 64 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 309 Reads contain 309 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1097 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 301 Contig length: 593 Avg. contig coverage: 1 Consensus contains: A: 144 C: 143 G: 167 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 593 Reads contain 593 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1096 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 302 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 136 C: 90 G: 66 T: 88 N: 0 IUPAC: 2 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1095 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 303 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 145 C: 101 G: 114 T: 137 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1094 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 304 Contig length: 732 Avg. contig coverage: 1 Consensus contains: A: 148 C: 138 G: 212 T: 232 N: 1 IUPAC: 1 Funny: 0 *: 0 Num reads: 1 Avg. read length: 732 Reads contain 731 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1093 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 305 Contig length: 287 Avg. contig coverage: 1 Consensus contains: A: 54 C: 75 G: 62 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 287 Reads contain 287 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1092 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 306 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 49 C: 85 G: 75 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1091 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 307 Contig length: 676 Avg. contig coverage: 1 Consensus contains: A: 148 C: 186 G: 155 T: 170 N: 0 IUPAC: 17 Funny: 0 *: 0 Num reads: 1 Avg. read length: 676 Reads contain 676 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1090 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 308 Contig length: 610 Avg. contig coverage: 1 Consensus contains: A: 135 C: 134 G: 168 T: 162 N: 0 IUPAC: 11 Funny: 0 *: 0 Num reads: 1 Avg. read length: 610 Reads contain 610 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1089 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 309 Contig length: 626 Avg. contig coverage: 1 Consensus contains: A: 127 C: 149 G: 165 T: 150 N: 0 IUPAC: 35 Funny: 0 *: 0 Num reads: 1 Avg. read length: 626 Reads contain 626 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1088 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 310 Contig length: 904 Avg. contig coverage: 1 Consensus contains: A: 222 C: 169 G: 206 T: 280 N: 0 IUPAC: 27 Funny: 0 *: 0 Num reads: 1 Avg. read length: 904 Reads contain 904 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1087 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 311 Contig length: 860 Avg. contig coverage: 1 Consensus contains: A: 273 C: 192 G: 176 T: 214 N: 0 IUPAC: 5 Funny: 0 *: 0 Num reads: 1 Avg. read length: 860 Reads contain 860 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1086 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 312 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 150 C: 130 G: 134 T: 152 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 566 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1085 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 313 Contig length: 246 Avg. contig coverage: 1 Consensus contains: A: 54 C: 54 G: 62 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 246 Reads contain 246 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1084 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 314 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 143 C: 133 G: 108 T: 184 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 568 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1083 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 315 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 168 C: 120 G: 83 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1082 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 316 Contig length: 549 Avg. contig coverage: 1 Consensus contains: A: 115 C: 192 G: 112 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 549 Reads contain 549 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1081 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 317 Contig length: 578 Avg. contig coverage: 1 Consensus contains: A: 175 C: 140 G: 116 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 578 Reads contain 578 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1080 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 318 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 103 C: 83 G: 79 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1079 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 319 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 117 C: 118 G: 107 T: 99 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1078 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 320 Contig length: 639 Avg. contig coverage: 1 Consensus contains: A: 185 C: 125 G: 143 T: 185 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 639 Reads contain 638 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1077 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 321 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 114 C: 133 G: 107 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1076 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 322 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 101 C: 59 G: 136 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1075 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 323 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 53 C: 38 G: 87 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1074 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 324 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 99 C: 116 G: 99 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1073 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 325 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 122 C: 101 G: 114 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1072 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 326 Contig length: 247 Avg. contig coverage: 1 Consensus contains: A: 81 C: 54 G: 74 T: 38 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 247 Reads contain 247 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1071 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 327 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 47 C: 47 G: 39 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1070 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 328 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 87 C: 71 G: 61 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1069 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 329 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 116 C: 115 G: 125 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 453 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1068 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 330 Contig length: 171 Avg. contig coverage: 1 Consensus contains: A: 39 C: 43 G: 48 T: 40 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 171 Reads contain 170 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1067 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 331 Contig length: 134 Avg. contig coverage: 1 Consensus contains: A: 41 C: 27 G: 38 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 134 Reads contain 134 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1066 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 332 Contig length: 174 Avg. contig coverage: 1 Consensus contains: A: 40 C: 50 G: 47 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 174 Reads contain 174 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1065 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 333 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 70 C: 88 G: 94 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1064 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 334 Contig length: 395 Avg. contig coverage: 1 Consensus contains: A: 102 C: 98 G: 84 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 395 Reads contain 395 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1063 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 335 Contig length: 136 Avg. contig coverage: 1 Consensus contains: A: 26 C: 30 G: 36 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 136 Reads contain 136 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1062 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 336 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 112 C: 79 G: 91 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 403 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1061 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 337 Contig length: 264 Avg. contig coverage: 1 Consensus contains: A: 51 C: 64 G: 92 T: 57 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 264 Reads contain 264 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1060 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 338 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 119 C: 131 G: 109 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1059 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 339 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 116 C: 115 G: 75 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 430 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1058 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 340 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 153 C: 90 G: 117 T: 105 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 465 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1057 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 341 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 83 C: 107 G: 120 T: 118 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 428 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1056 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 342 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 84 C: 87 G: 118 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1055 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 343 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 105 C: 107 G: 100 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1054 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 344 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 129 C: 107 G: 113 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1053 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 345 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 102 C: 85 G: 117 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1052 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 346 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 114 C: 118 G: 114 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1051 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 347 Contig length: 295 Avg. contig coverage: 1 Consensus contains: A: 73 C: 69 G: 70 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 295 Reads contain 295 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1050 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 348 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 53 C: 26 G: 30 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1049 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 349 Contig length: 237 Avg. contig coverage: 1 Consensus contains: A: 74 C: 55 G: 60 T: 48 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 237 Reads contain 237 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1048 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 350 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 92 C: 95 G: 59 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1047 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 351 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 112 C: 113 G: 118 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 452 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1046 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 352 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 90 C: 75 G: 60 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1045 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 353 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 76 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1044 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 354 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 102 C: 102 G: 105 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1043 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 355 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 103 C: 87 G: 106 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1042 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 356 Contig length: 157 Avg. contig coverage: 1 Consensus contains: A: 37 C: 35 G: 46 T: 39 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 157 Reads contain 157 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1041 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 357 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 75 T: 106 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 370 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1040 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 358 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 148 C: 96 G: 59 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1039 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 359 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 130 C: 119 G: 85 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1038 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 360 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 67 C: 90 G: 80 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1037 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 361 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 94 G: 66 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 339 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1036 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 362 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 132 C: 108 G: 140 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 530 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1035 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 363 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 129 C: 71 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1034 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 364 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 37 C: 24 G: 32 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1033 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 365 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 99 C: 139 G: 95 T: 176 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 509 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1032 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 366 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 101 C: 127 G: 129 T: 113 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 470 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1031 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 367 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 68 C: 70 G: 67 T: 77 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 282 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1030 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 368 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 156 C: 118 G: 136 T: 134 N: 7 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 544 bases, 7 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1029 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 369 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 103 C: 100 G: 66 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 393 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1028 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 370 Contig length: 362 Avg. contig coverage: 1 Consensus contains: A: 92 C: 88 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 362 Reads contain 362 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1027 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 371 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 106 C: 140 G: 97 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 464 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1026 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 372 Contig length: 265 Avg. contig coverage: 1 Consensus contains: A: 81 C: 46 G: 64 T: 73 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 265 Reads contain 264 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1025 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 373 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 122 C: 116 G: 114 T: 148 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 500 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1024 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 374 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 152 C: 98 G: 70 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1023 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 375 Contig length: 275 Avg. contig coverage: 1 Consensus contains: A: 61 C: 60 G: 53 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 275 Reads contain 275 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1022 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 376 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 79 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1021 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 377 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 161 C: 138 G: 126 T: 162 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 587 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1020 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 378 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 122 C: 55 G: 35 T: 97 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 309 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1019 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 379 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 155 C: 139 G: 101 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 558 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1018 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 380 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 114 C: 98 G: 118 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1017 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 381 Contig length: 508 Avg. contig coverage: 1 Consensus contains: A: 140 C: 109 G: 134 T: 124 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 508 Reads contain 507 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 382 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1016 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 382 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 167 C: 162 G: 94 T: 159 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 582 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 383 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1015 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 383 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 95 C: 92 G: 67 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 384 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1014 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 384 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 56 C: 67 G: 50 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 298 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 385 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1013 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 385 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 124 C: 100 G: 120 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 452 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 386 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1012 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 386 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 128 C: 124 G: 160 T: 116 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 528 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 387 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1011 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 387 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 140 C: 137 G: 99 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 388 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1010 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 388 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 159 C: 159 G: 127 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 576 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 389 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1009 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 389 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 141 C: 89 G: 85 T: 128 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 443 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 390 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1008 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 390 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 59 C: 65 G: 67 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 391 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1007 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 391 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 148 C: 100 G: 128 T: 153 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 392 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1006 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 392 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 138 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 427 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 393 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1005 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 393 Contig length: 555 Avg. contig coverage: 1 Consensus contains: A: 131 C: 160 G: 95 T: 161 N: 8 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 555 Reads contain 547 bases, 8 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 394 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1004 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 394 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 129 C: 103 G: 123 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 395 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1003 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 395 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 121 C: 85 G: 64 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 396 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1002 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 396 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 116 C: 108 G: 56 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 397 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1001 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 397 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 165 C: 137 G: 116 T: 155 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 573 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 398 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1000 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 398 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 119 C: 113 G: 96 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 399 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 999 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 399 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 105 C: 77 G: 74 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 400 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 998 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 400 Contig length: 621 Avg. contig coverage: 1 Consensus contains: A: 162 C: 140 G: 167 T: 148 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 621 Reads contain 617 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 401 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 997 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 401 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 137 C: 121 G: 147 T: 128 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 533 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 402 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 996 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 402 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 108 C: 104 G: 134 T: 103 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 449 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 403 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 995 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 403 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 119 C: 66 G: 53 T: 82 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 320 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 404 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 994 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 404 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 87 C: 87 G: 131 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 405 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 993 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 405 Contig length: 589 Avg. contig coverage: 1 Consensus contains: A: 157 C: 127 G: 164 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 589 Reads contain 589 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 406 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 992 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 406 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 119 C: 120 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 407 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 991 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 407 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 67 C: 58 G: 85 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 408 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 990 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 408 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 76 C: 57 G: 25 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 409 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 989 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 409 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 52 C: 52 G: 35 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 410 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 988 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 410 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 62 C: 26 G: 29 T: 38 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 411 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 987 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 411 Contig length: 166 Avg. contig coverage: 1 Consensus contains: A: 23 C: 38 G: 47 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 166 Reads contain 166 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 412 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 986 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 412 Contig length: 217 Avg. contig coverage: 1 Consensus contains: A: 57 C: 44 G: 54 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 217 Reads contain 217 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 413 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 985 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 413 Contig length: 163 Avg. contig coverage: 1 Consensus contains: A: 68 C: 27 G: 23 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 163 Reads contain 163 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 414 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 984 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 414 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 83 C: 41 G: 36 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 415 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 983 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 415 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 102 C: 59 G: 99 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 416 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 982 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 416 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 70 C: 51 G: 42 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 417 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 981 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 417 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 30 C: 40 G: 53 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 418 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 980 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 418 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 56 C: 18 G: 17 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 419 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 979 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 419 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 86 C: 43 G: 27 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 420 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 978 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 420 Contig length: 120 Avg. contig coverage: 1 Consensus contains: A: 47 C: 22 G: 11 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 120 Reads contain 120 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 421 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 977 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 421 Contig length: 199 Avg. contig coverage: 1 Consensus contains: A: 81 C: 38 G: 26 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 199 Reads contain 199 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 422 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 976 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 422 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 151 C: 117 G: 135 T: 162 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 565 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 423 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 975 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 423 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 104 C: 76 G: 102 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 424 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 974 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 424 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 67 G: 101 T: 87 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 346 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 425 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 973 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 425 Contig length: 139 Avg. contig coverage: 1 Consensus contains: A: 29 C: 36 G: 34 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 139 Reads contain 139 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 426 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 972 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 426 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 48 C: 45 G: 6 T: 58 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 157 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 427 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 971 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 427 Contig length: 129 Avg. contig coverage: 1 Consensus contains: A: 39 C: 34 G: 19 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 129 Reads contain 129 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 428 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 970 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 428 Contig length: 226 Avg. contig coverage: 1 Consensus contains: A: 61 C: 48 G: 64 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 226 Reads contain 226 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 429 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 969 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 429 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 90 C: 66 G: 103 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 430 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 968 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 430 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 131 C: 99 G: 51 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 431 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 967 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 431 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 91 T: 96 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 432 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 966 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 432 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 58 C: 43 G: 57 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 433 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 965 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 433 Contig length: 146 Avg. contig coverage: 1 Consensus contains: A: 51 C: 24 G: 32 T: 39 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 146 Reads contain 146 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 434 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 964 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 434 Contig length: 209 Avg. contig coverage: 1 Consensus contains: A: 49 C: 47 G: 47 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 209 Reads contain 208 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 435 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 963 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 435 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 147 C: 94 G: 66 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 436 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 962 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 436 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 157 C: 83 G: 71 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 437 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 961 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 437 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 132 C: 97 G: 110 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 446 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 438 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 960 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 438 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 118 G: 85 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 439 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 959 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 439 Contig length: 308 Avg. contig coverage: 1 Consensus contains: A: 122 C: 67 G: 49 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 308 Reads contain 308 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 440 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 958 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 440 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 22 C: 40 G: 45 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 441 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 957 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 441 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 18 T: 17 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 442 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 956 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 442 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 130 C: 71 G: 99 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 443 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 955 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 443 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 124 C: 76 G: 121 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 444 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 954 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 444 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 119 C: 105 G: 123 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 445 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 953 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 445 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 78 C: 98 G: 86 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 446 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 952 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 446 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 141 C: 80 G: 63 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 447 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 951 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 447 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 79 C: 76 G: 75 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 448 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 950 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 448 Contig length: 286 Avg. contig coverage: 1 Consensus contains: A: 107 C: 61 G: 38 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 286 Reads contain 286 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 449 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 949 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 449 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 50 C: 34 G: 34 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 450 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 948 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 450 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 132 C: 128 G: 124 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 522 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 451 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 947 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 451 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 111 C: 97 G: 121 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 452 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 946 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 452 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 99 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 453 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 945 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 453 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 82 C: 53 G: 68 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 454 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 944 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 454 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 165 C: 105 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 455 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 943 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 455 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 67 C: 55 G: 53 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 456 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 942 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 456 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 91 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 457 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 941 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 457 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 45 C: 50 G: 59 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 458 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 940 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 458 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 109 C: 120 G: 90 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 459 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 939 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 459 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 82 C: 79 G: 72 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 460 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 938 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 460 Contig length: 248 Avg. contig coverage: 1 Consensus contains: A: 54 C: 83 G: 53 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 248 Reads contain 248 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 461 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 937 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 461 Contig length: 436 Avg. contig coverage: 1 Consensus contains: A: 127 C: 94 G: 95 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 436 Reads contain 436 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 462 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 936 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 462 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 143 C: 85 G: 55 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 463 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 935 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 463 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 94 C: 88 G: 78 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 464 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 934 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 464 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 62 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 465 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 933 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 465 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 114 C: 151 G: 92 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 466 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 932 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 466 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 94 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 467 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 931 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 467 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 111 C: 125 G: 104 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 468 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 930 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 468 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 143 C: 113 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 469 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 929 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 469 Contig length: 572 Avg. contig coverage: 1 Consensus contains: A: 152 C: 134 G: 115 T: 171 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 572 Reads contain 572 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 470 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 928 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 470 Contig length: 571 Avg. contig coverage: 1 Consensus contains: A: 149 C: 126 G: 139 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 571 Reads contain 571 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 471 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 927 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 471 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 64 C: 59 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 472 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 926 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 472 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 164 C: 158 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 473 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 925 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 473 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 62 C: 106 G: 68 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 474 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 924 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 474 Contig length: 145 Avg. contig coverage: 1 Consensus contains: A: 33 C: 24 G: 48 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 145 Reads contain 145 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 475 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 923 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 475 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 139 C: 126 G: 108 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 476 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 922 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 476 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 124 C: 58 G: 57 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 477 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 921 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 477 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 75 C: 65 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 478 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 920 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 478 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 29 G: 27 T: 34 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 479 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 919 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 479 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 139 C: 115 G: 101 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 480 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 918 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 480 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 151 C: 121 G: 132 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 481 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 917 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 481 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 98 C: 37 G: 13 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 482 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 916 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 482 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 99 C: 131 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 483 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 915 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 483 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 140 C: 84 G: 75 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 484 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 914 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 484 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 146 C: 116 G: 119 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 485 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 913 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 485 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 95 C: 124 G: 70 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 486 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 912 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 486 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 102 C: 31 G: 35 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 487 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 911 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 487 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 106 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 488 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 910 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 488 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 163 C: 108 G: 66 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 489 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 909 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 489 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 159 C: 111 G: 128 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 533 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 490 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 908 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 490 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 139 C: 97 G: 59 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 491 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 907 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 491 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 77 C: 83 G: 67 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 492 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 906 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 492 Contig length: 97 Avg. contig coverage: 1 Consensus contains: A: 22 C: 17 G: 37 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 97 Reads contain 97 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 493 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 905 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 493 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 135 C: 97 G: 140 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 494 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 904 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 494 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 131 C: 86 G: 48 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 495 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 903 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 495 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 97 C: 77 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 496 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 902 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 496 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 76 C: 97 G: 106 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 497 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 901 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 497 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 157 C: 138 G: 114 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 498 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 900 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 498 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 113 C: 100 G: 118 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 499 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 899 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 499 Contig length: 215 Avg. contig coverage: 1 Consensus contains: A: 48 C: 65 G: 51 T: 51 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 215 Reads contain 215 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 500 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 898 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 500 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 98 C: 115 G: 82 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 501 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 897 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 501 Contig length: 89 Avg. contig coverage: 1 Consensus contains: A: 34 C: 17 G: 16 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 89 Reads contain 89 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 502 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 896 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 502 Contig length: 112 Avg. contig coverage: 1 Consensus contains: A: 20 C: 18 G: 43 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 112 Reads contain 112 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 503 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 895 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 503 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 38 C: 79 G: 77 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 504 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 894 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 504 Contig length: 221 Avg. contig coverage: 1 Consensus contains: A: 62 C: 57 G: 62 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 221 Reads contain 221 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 505 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 893 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 505 Contig length: 204 Avg. contig coverage: 1 Consensus contains: A: 36 C: 64 G: 62 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 204 Reads contain 204 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 506 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 892 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 506 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 91 C: 98 G: 65 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 507 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 891 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 507 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 87 C: 65 G: 57 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 508 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 890 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 508 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 58 C: 39 G: 80 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 509 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 889 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 509 Contig length: 276 Avg. contig coverage: 1 Consensus contains: A: 66 C: 56 G: 76 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 276 Reads contain 276 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 510 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 888 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 510 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 169 C: 110 G: 79 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 511 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 887 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 511 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 114 C: 168 G: 101 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 512 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 886 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 512 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 145 C: 118 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 513 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 885 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 513 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 144 C: 133 G: 104 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 514 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 884 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 514 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 152 C: 76 G: 129 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 515 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 883 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 515 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 151 C: 129 G: 179 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 516 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 882 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 516 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 146 C: 92 G: 117 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 517 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 881 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 517 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 84 C: 36 G: 19 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 518 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 880 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 518 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 167 C: 102 G: 137 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 519 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 879 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 519 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 107 C: 80 G: 99 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 520 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 878 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 520 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 160 C: 110 G: 89 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 521 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 877 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 521 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 146 C: 85 G: 95 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 522 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 876 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 522 Contig length: 568 Avg. contig coverage: 1 Consensus contains: A: 177 C: 120 G: 121 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 568 Reads contain 568 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 523 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 875 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 523 Contig length: 501 Avg. contig coverage: 1 Consensus contains: A: 117 C: 135 G: 97 T: 152 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 501 Reads contain 501 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 524 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 874 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 524 Contig length: 470 Avg. contig coverage: 1 Consensus contains: A: 134 C: 92 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 470 Reads contain 470 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 525 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 873 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 525 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 82 C: 70 G: 92 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 526 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 872 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 526 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 153 C: 125 G: 123 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 527 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 871 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 527 Contig length: 657 Avg. contig coverage: 1 Consensus contains: A: 171 C: 161 G: 107 T: 218 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 657 Reads contain 657 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 528 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 870 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 528 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 145 C: 131 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 529 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 869 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 529 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 155 C: 131 G: 156 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 587 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 530 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 868 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 530 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 110 C: 104 G: 125 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 531 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 867 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 531 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 170 C: 116 G: 91 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 532 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 866 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 532 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 146 C: 99 G: 114 T: 192 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 533 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 865 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 533 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 132 C: 104 G: 106 T: 146 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 488 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 534 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 864 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 534 Contig length: 254 Avg. contig coverage: 1 Consensus contains: A: 104 C: 44 G: 35 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 254 Reads contain 254 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 535 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 863 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 535 Contig length: 612 Avg. contig coverage: 1 Consensus contains: A: 147 C: 129 G: 155 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 612 Reads contain 610 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 536 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 862 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 536 Contig length: 175 Avg. contig coverage: 1 Consensus contains: A: 47 C: 27 G: 54 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 175 Reads contain 175 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 537 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 861 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 537 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 132 C: 91 G: 108 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 538 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 860 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 538 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 121 C: 133 G: 119 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 539 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 859 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 539 Contig length: 579 Avg. contig coverage: 1 Consensus contains: A: 124 C: 141 G: 124 T: 190 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 579 Reads contain 579 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 540 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 858 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 540 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 120 C: 81 G: 43 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 541 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 857 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 541 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 117 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 542 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 856 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 542 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 111 C: 109 G: 110 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 543 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 855 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 543 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 155 C: 143 G: 69 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 544 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 854 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 544 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 151 C: 120 G: 118 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 545 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 853 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 545 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 147 C: 115 G: 131 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 546 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 852 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 546 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 197 C: 120 G: 84 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 547 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 851 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 547 Contig length: 600 Avg. contig coverage: 1 Consensus contains: A: 200 C: 113 G: 143 T: 141 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 600 Reads contain 597 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 548 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 850 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 548 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 101 C: 100 G: 107 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 549 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 849 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 549 Contig length: 305 Avg. contig coverage: 1 Consensus contains: A: 81 C: 58 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 305 Reads contain 305 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 550 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 848 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 550 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 142 C: 105 G: 121 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 551 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 847 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 551 Contig length: 450 Avg. contig coverage: 1 Consensus contains: A: 114 C: 103 G: 120 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 450 Reads contain 450 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 552 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 846 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 552 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 147 G: 102 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 553 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 845 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 553 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 135 C: 109 G: 132 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 554 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 844 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 554 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 91 C: 40 G: 35 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 555 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 843 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 555 Contig length: 510 Avg. contig coverage: 1 Consensus contains: A: 159 C: 118 G: 87 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 510 Reads contain 510 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 556 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 842 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 556 Contig length: 581 Avg. contig coverage: 1 Consensus contains: A: 147 C: 170 G: 113 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 581 Reads contain 581 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 557 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 841 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 557 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 127 C: 121 G: 96 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 558 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 840 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 558 Contig length: 290 Avg. contig coverage: 1 Consensus contains: A: 99 C: 73 G: 32 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 290 Reads contain 290 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 559 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 839 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 559 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 76 C: 167 G: 35 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 560 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 838 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 560 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 160 C: 114 G: 127 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 561 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 837 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 561 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 83 C: 76 G: 107 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 562 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 836 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 562 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 109 C: 74 G: 124 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 563 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 835 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 563 Contig length: 566 Avg. contig coverage: 1 Consensus contains: A: 154 C: 140 G: 122 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 566 Reads contain 566 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 564 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 834 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 564 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 100 C: 78 G: 48 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 565 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 833 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 565 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 187 C: 147 G: 71 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 566 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 832 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 566 Contig length: 567 Avg. contig coverage: 1 Consensus contains: A: 150 C: 104 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 567 Reads contain 567 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 567 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 831 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 567 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 150 C: 116 G: 111 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 568 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 830 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 568 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 143 C: 88 G: 75 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 569 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 829 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 569 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 133 C: 116 G: 141 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 570 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 828 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 570 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 82 C: 82 G: 100 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 571 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 827 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 571 Contig length: 460 Avg. contig coverage: 1 Consensus contains: A: 157 C: 111 G: 66 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 460 Reads contain 460 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 572 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 826 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 572 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 155 C: 100 G: 88 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 573 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 825 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 573 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 66 C: 81 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 574 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 824 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 574 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 128 C: 121 G: 115 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 575 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 823 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 575 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 139 C: 122 G: 107 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 576 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 822 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 576 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 163 C: 100 G: 118 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 577 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 821 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 577 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 109 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 578 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 820 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 578 Contig length: 542 Avg. contig coverage: 1 Consensus contains: A: 128 C: 154 G: 149 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 542 Reads contain 541 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 579 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 819 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 579 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 133 C: 108 G: 101 T: 201 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 543 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 580 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 818 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 580 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 123 C: 128 G: 118 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 581 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 817 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 581 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 142 C: 123 G: 117 T: 177 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 582 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 816 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 582 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 98 C: 62 G: 128 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 583 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 815 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 583 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 54 C: 21 G: 47 T: 20 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 584 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 814 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 584 Contig length: 352 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 67 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 352 Reads contain 352 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 585 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 813 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 585 Contig length: 464 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 61 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 464 Reads contain 464 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 586 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 812 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 586 Contig length: 487 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 106 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 487 Reads contain 487 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 587 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 811 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 587 Contig length: 361 Avg. contig coverage: 1 Consensus contains: A: 83 C: 69 G: 105 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 361 Reads contain 361 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 588 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 810 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 588 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 135 C: 117 G: 129 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 589 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 809 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 589 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 78 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 590 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 808 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 590 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 63 C: 90 G: 86 T: 86 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 325 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 591 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 807 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 591 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 111 C: 124 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 592 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 806 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 592 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 84 C: 178 G: 108 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 593 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 805 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 593 Contig length: 656 Avg. contig coverage: 1 Consensus contains: A: 184 C: 144 G: 162 T: 164 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 656 Reads contain 654 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 594 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 804 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 594 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 79 C: 85 G: 95 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 595 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 803 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 595 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 171 C: 120 G: 172 T: 158 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 621 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 596 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 802 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 596 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 117 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 597 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 801 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 597 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 153 C: 131 G: 112 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 598 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 800 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 598 Contig length: 378 Avg. contig coverage: 1 Consensus contains: A: 97 C: 102 G: 88 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 378 Reads contain 378 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 599 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 799 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 599 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 191 C: 121 G: 109 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 600 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 798 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 600 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 170 C: 148 G: 168 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 601 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 797 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 601 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 120 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 602 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 796 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 602 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 603 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 795 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 603 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 117 C: 133 G: 93 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 604 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 794 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 604 Contig length: 587 Avg. contig coverage: 1 Consensus contains: A: 152 C: 107 G: 147 T: 179 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 587 Reads contain 585 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 605 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 793 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 605 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 131 C: 123 G: 105 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 606 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 792 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 606 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 140 C: 113 G: 96 T: 174 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 607 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 791 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 607 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 122 C: 104 G: 104 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 608 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 790 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 608 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 159 C: 150 G: 114 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 609 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 789 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 609 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 182 C: 107 G: 147 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 610 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 788 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 610 Contig length: 615 Avg. contig coverage: 1 Consensus contains: A: 141 C: 148 G: 171 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 615 Reads contain 614 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 611 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 787 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 611 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 162 C: 127 G: 96 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 612 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 786 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 612 Contig length: 559 Avg. contig coverage: 1 Consensus contains: A: 148 C: 130 G: 102 T: 179 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 559 Reads contain 559 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 613 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 785 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 613 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 135 C: 133 G: 142 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 552 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 614 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 784 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 614 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 176 C: 134 G: 61 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 615 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 783 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 615 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 128 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 616 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 782 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 616 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 149 C: 104 G: 80 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 617 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 781 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 617 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 137 C: 95 G: 96 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 618 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 780 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 618 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 138 C: 110 G: 124 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 486 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 619 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 779 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 619 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 159 C: 94 G: 104 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 620 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 778 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 620 Contig length: 480 Avg. contig coverage: 1 Consensus contains: A: 160 C: 111 G: 72 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 480 Reads contain 480 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 621 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 777 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 621 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 134 C: 111 G: 101 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 622 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 776 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 622 Contig length: 592 Avg. contig coverage: 1 Consensus contains: A: 156 C: 141 G: 150 T: 145 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 592 Reads contain 592 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 623 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 775 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 623 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 91 C: 54 G: 76 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 624 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 774 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 624 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 131 C: 78 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 625 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 773 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 625 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 99 C: 96 G: 141 T: 186 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 626 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 772 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 626 Contig length: 590 Avg. contig coverage: 1 Consensus contains: A: 154 C: 124 G: 146 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 590 Reads contain 590 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 627 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 771 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 627 Contig length: 495 Avg. contig coverage: 1 Consensus contains: A: 138 C: 142 G: 107 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 495 Reads contain 495 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 628 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 770 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 628 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 154 C: 117 G: 107 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 524 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 629 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 769 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 629 Contig length: 159 Avg. contig coverage: 1 Consensus contains: A: 59 C: 36 G: 23 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 159 Reads contain 159 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 630 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 768 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 630 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 82 C: 104 G: 83 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 631 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 767 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 631 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 94 C: 35 G: 32 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 632 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 766 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 632 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 77 C: 113 G: 128 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 633 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 765 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 633 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 96 C: 74 G: 87 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 634 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 764 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 634 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 129 C: 73 G: 61 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 635 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 763 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 635 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 164 C: 91 G: 71 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 636 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 762 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 636 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 127 C: 106 G: 112 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 637 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 761 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 637 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 92 C: 74 G: 120 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 638 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 760 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 638 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 106 C: 54 G: 133 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 639 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 759 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 639 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 141 C: 114 G: 114 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 640 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 758 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 640 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 79 T: 168 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 641 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 757 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 641 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 125 C: 103 G: 67 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 642 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 756 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 642 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 60 C: 76 G: 82 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 643 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 755 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 643 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 96 G: 127 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 644 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 754 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 644 Contig length: 675 Avg. contig coverage: 1 Consensus contains: A: 194 C: 136 G: 156 T: 187 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 675 Reads contain 673 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 645 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 753 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 645 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 101 C: 111 G: 108 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 646 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 752 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 646 Contig length: 537 Avg. contig coverage: 1 Consensus contains: A: 131 C: 94 G: 159 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 537 Reads contain 537 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 647 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 751 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 647 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 156 C: 107 G: 84 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 648 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 750 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 648 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 94 C: 104 G: 93 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 649 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 749 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 649 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 169 C: 96 G: 123 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 650 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 748 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 650 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 126 C: 78 G: 47 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 651 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 747 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 651 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 121 C: 93 G: 83 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 652 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 746 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 652 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 139 C: 77 G: 130 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 653 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 745 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 653 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 82 C: 23 G: 28 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 654 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 744 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 654 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 142 C: 100 G: 84 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 655 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 743 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 655 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 131 C: 117 G: 102 T: 135 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 656 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 742 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 656 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 122 C: 106 G: 146 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 490 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 657 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 741 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 657 Contig length: 132 Avg. contig coverage: 1 Consensus contains: A: 73 C: 0 G: 30 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 132 Reads contain 132 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 658 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 740 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 658 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 107 C: 75 G: 75 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 659 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 739 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 659 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 85 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 472 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 660 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 738 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 660 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 177 C: 130 G: 180 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 661 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 737 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 661 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 128 C: 120 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 662 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 736 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 662 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 119 C: 126 G: 103 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 663 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 735 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 663 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 150 C: 107 G: 66 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 664 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 734 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 664 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 83 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 430 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 665 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 733 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 665 Contig length: 640 Avg. contig coverage: 1 Consensus contains: A: 152 C: 176 G: 123 T: 189 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 640 Reads contain 640 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 666 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 732 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 666 Contig length: 637 Avg. contig coverage: 1 Consensus contains: A: 164 C: 151 G: 139 T: 182 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 637 Reads contain 636 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 667 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 731 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 667 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 134 C: 113 G: 112 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 668 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 730 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 668 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 109 C: 89 G: 77 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 669 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 729 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 669 Contig length: 664 Avg. contig coverage: 1 Consensus contains: A: 188 C: 119 G: 177 T: 178 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 664 Reads contain 662 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 670 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 728 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 670 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 150 C: 112 G: 139 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 671 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 727 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 671 Contig length: 613 Avg. contig coverage: 1 Consensus contains: A: 178 C: 117 G: 156 T: 161 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 613 Reads contain 612 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 672 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 726 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 672 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 127 C: 147 G: 109 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 673 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 725 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 673 Contig length: 625 Avg. contig coverage: 1 Consensus contains: A: 162 C: 145 G: 162 T: 155 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 625 Reads contain 624 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 674 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 724 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 674 Contig length: 577 Avg. contig coverage: 1 Consensus contains: A: 169 C: 131 G: 128 T: 149 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 577 Reads contain 577 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 675 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 723 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 675 Contig length: 554 Avg. contig coverage: 1 Consensus contains: A: 171 C: 141 G: 109 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 554 Reads contain 554 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 676 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 722 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 676 Contig length: 611 Avg. contig coverage: 1 Consensus contains: A: 204 C: 139 G: 95 T: 171 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 611 Reads contain 609 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 677 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 721 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 677 Contig length: 652 Avg. contig coverage: 1 Consensus contains: A: 160 C: 140 G: 160 T: 191 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 652 Reads contain 651 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 678 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 720 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 678 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 144 C: 102 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 679 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 719 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 679 Contig length: 570 Avg. contig coverage: 1 Consensus contains: A: 142 C: 136 G: 151 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 570 Reads contain 570 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 680 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 718 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 680 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 124 C: 117 G: 125 T: 131 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 497 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 681 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 717 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 681 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 141 C: 140 G: 110 T: 183 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 682 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 716 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 682 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 130 C: 117 G: 165 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 683 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 715 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 683 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 176 C: 131 G: 78 T: 184 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 684 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 714 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 684 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 191 C: 117 G: 63 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 685 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 713 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 685 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 167 C: 144 G: 122 T: 170 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 686 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 712 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 686 Contig length: 588 Avg. contig coverage: 1 Consensus contains: A: 198 C: 119 G: 105 T: 165 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 588 Reads contain 587 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 687 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 711 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 687 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 155 C: 102 G: 141 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 688 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 710 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 688 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 130 C: 137 G: 109 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 689 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 709 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 689 Contig length: 585 Avg. contig coverage: 1 Consensus contains: A: 157 C: 104 G: 149 T: 174 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 585 Reads contain 584 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 690 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 708 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 690 Contig length: 596 Avg. contig coverage: 1 Consensus contains: A: 137 C: 146 G: 140 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 596 Reads contain 596 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 691 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 707 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 691 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 194 C: 102 G: 127 T: 127 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 550 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 692 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 706 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 692 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 112 C: 86 G: 83 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 693 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 705 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 693 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 149 C: 94 G: 58 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 694 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 704 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 694 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 137 C: 115 G: 83 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 695 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 703 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 695 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 107 C: 107 G: 107 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 696 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 702 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 696 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 127 C: 83 G: 42 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 697 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 701 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 697 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 172 C: 111 G: 83 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 698 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 700 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 698 Contig length: 397 Avg. contig coverage: 1 Consensus contains: A: 119 C: 133 G: 56 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 397 Reads contain 397 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 699 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 699 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 699 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 166 C: 116 G: 166 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 700 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 698 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 700 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 131 C: 130 G: 109 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 511 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 701 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 697 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 701 Contig length: 344 Avg. contig coverage: 1 Consensus contains: A: 84 C: 80 G: 78 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 344 Reads contain 344 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 702 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 696 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 702 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 128 C: 111 G: 108 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 703 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 695 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 703 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 82 C: 61 G: 74 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 704 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 694 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 704 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 71 C: 78 G: 89 T: 164 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 705 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 693 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 705 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 115 C: 73 G: 55 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 706 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 692 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 706 Contig length: 298 Avg. contig coverage: 1 Consensus contains: A: 101 C: 64 G: 47 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 298 Reads contain 298 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 707 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 691 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 707 Contig length: 558 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 139 T: 147 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 558 Reads contain 557 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 708 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 690 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 708 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 137 C: 116 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 709 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 689 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 709 Contig length: 522 Avg. contig coverage: 1 Consensus contains: A: 130 C: 141 G: 109 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 522 Reads contain 522 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 710 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 688 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 710 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 131 C: 98 G: 99 T: 129 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 711 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 687 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 711 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 127 C: 124 G: 109 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 712 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 686 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 712 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 114 C: 120 G: 87 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 713 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 685 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 713 Contig length: 523 Avg. contig coverage: 1 Consensus contains: A: 180 C: 147 G: 80 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 523 Reads contain 523 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 714 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 684 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 714 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 132 C: 154 G: 95 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 715 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 683 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 715 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 194 C: 139 G: 71 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 716 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 682 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 716 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 145 C: 116 G: 91 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 490 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 717 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 681 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 717 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 169 C: 80 G: 130 T: 122 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 501 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 718 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 680 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 718 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 113 C: 124 G: 101 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 719 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 679 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 719 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 145 C: 112 G: 150 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 720 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 678 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 720 Contig length: 605 Avg. contig coverage: 1 Consensus contains: A: 176 C: 111 G: 158 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 605 Reads contain 605 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 721 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 677 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 721 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 135 C: 136 G: 91 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 472 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 722 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 676 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 722 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 189 C: 113 G: 110 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 723 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 675 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 723 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 123 C: 155 G: 71 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 503 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 724 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 674 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 724 Contig length: 504 Avg. contig coverage: 1 Consensus contains: A: 125 C: 144 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 504 Reads contain 504 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 725 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 673 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 725 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 145 C: 92 G: 86 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 726 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 672 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 726 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 129 C: 122 G: 113 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 727 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 671 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 727 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 120 C: 130 G: 142 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 728 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 670 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 728 Contig length: 406 Avg. contig coverage: 1 Consensus contains: A: 141 C: 105 G: 59 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 406 Reads contain 406 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 729 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 669 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 729 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 107 C: 116 G: 90 T: 150 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 730 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 668 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 730 Contig length: 573 Avg. contig coverage: 1 Consensus contains: A: 149 C: 158 G: 123 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 573 Reads contain 573 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 731 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 667 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 731 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 103 C: 75 G: 91 T: 169 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 732 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 666 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 732 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 121 C: 116 G: 83 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 437 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 733 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 665 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 733 Contig length: 302 Avg. contig coverage: 1 Consensus contains: A: 70 C: 79 G: 72 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 302 Reads contain 302 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 734 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 664 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 734 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 102 C: 82 G: 116 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 735 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 663 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 735 Contig length: 594 Avg. contig coverage: 1 Consensus contains: A: 168 C: 111 G: 165 T: 149 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 594 Reads contain 593 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 736 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 662 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 736 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 122 C: 95 G: 94 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 737 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 661 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 737 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 114 T: 173 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 527 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 738 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 660 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 738 Contig length: 569 Avg. contig coverage: 1 Consensus contains: A: 164 C: 112 G: 155 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 569 Reads contain 569 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 739 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 659 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 739 Contig length: 499 Avg. contig coverage: 1 Consensus contains: A: 164 C: 120 G: 79 T: 134 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 499 Reads contain 497 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 740 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 658 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 740 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 142 C: 132 G: 94 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 741 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 657 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 741 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 133 C: 127 G: 109 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 742 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 656 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 742 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 108 C: 139 G: 129 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 743 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 655 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 743 Contig length: 582 Avg. contig coverage: 1 Consensus contains: A: 135 C: 119 G: 152 T: 174 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 582 Reads contain 580 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 744 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 654 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 744 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 131 C: 95 G: 57 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 745 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 653 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 745 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 77 C: 71 G: 91 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 746 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 652 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 746 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 120 C: 86 G: 106 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 747 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 651 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 747 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 177 C: 128 G: 79 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 748 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 650 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 748 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 80 C: 80 G: 92 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 749 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 649 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 749 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 164 C: 136 G: 116 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 750 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 648 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 750 Contig length: 514 Avg. contig coverage: 1 Consensus contains: A: 130 C: 128 G: 89 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 514 Reads contain 514 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 751 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 647 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 751 Contig length: 546 Avg. contig coverage: 1 Consensus contains: A: 123 C: 132 G: 138 T: 153 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 546 Reads contain 546 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 752 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 646 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 752 Contig length: 516 Avg. contig coverage: 1 Consensus contains: A: 178 C: 122 G: 80 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 516 Reads contain 516 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 753 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 645 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 753 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 143 C: 130 G: 112 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 754 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 644 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 754 Contig length: 661 Avg. contig coverage: 1 Consensus contains: A: 189 C: 124 G: 167 T: 181 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 661 Reads contain 661 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 755 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 643 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 755 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 115 C: 122 G: 148 T: 178 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 756 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 642 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 756 Contig length: 586 Avg. contig coverage: 1 Consensus contains: A: 186 C: 135 G: 132 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 586 Reads contain 586 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 757 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 641 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 757 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 114 C: 73 G: 121 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 758 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 640 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 758 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 108 C: 66 G: 70 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 759 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 639 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 759 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 142 C: 110 G: 139 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 760 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 638 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 760 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 132 C: 117 G: 154 T: 148 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 551 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 761 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 637 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 761 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 80 C: 100 G: 74 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 762 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 636 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 762 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 98 C: 68 G: 69 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 763 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 635 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 763 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 83 C: 54 G: 84 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 764 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 634 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 764 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 30 C: 24 G: 23 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 765 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 633 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 765 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 89 C: 66 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 766 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 632 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 766 Contig length: 525 Avg. contig coverage: 1 Consensus contains: A: 115 C: 170 G: 114 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 525 Reads contain 525 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 767 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 631 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 767 Contig length: 578 Avg. contig coverage: 1 Consensus contains: A: 169 C: 135 G: 101 T: 170 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 578 Reads contain 575 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 768 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 630 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 768 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 88 C: 90 G: 71 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 769 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 629 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 769 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 93 C: 151 G: 93 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 770 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 628 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 770 Contig length: 348 Avg. contig coverage: 1 Consensus contains: A: 92 C: 87 G: 65 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 348 Reads contain 348 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 771 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 627 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 771 Contig length: 438 Avg. contig coverage: 1 Consensus contains: A: 108 C: 194 G: 31 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 438 Reads contain 438 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 772 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 626 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 772 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 133 C: 114 G: 85 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 773 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 625 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 773 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 146 C: 130 G: 113 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 774 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 624 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 774 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 70 C: 28 G: 38 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 775 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 623 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 775 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 66 G: 73 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 776 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 622 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 776 Contig length: 538 Avg. contig coverage: 1 Consensus contains: A: 162 C: 106 G: 135 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 538 Reads contain 538 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 777 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 621 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 777 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 138 C: 86 G: 117 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 778 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 620 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 778 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 76 C: 82 G: 84 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 779 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 619 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 779 Contig length: 560 Avg. contig coverage: 1 Consensus contains: A: 156 C: 115 G: 129 T: 160 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 560 Reads contain 560 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 780 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 618 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 780 Contig length: 606 Avg. contig coverage: 1 Consensus contains: A: 172 C: 118 G: 141 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 606 Reads contain 606 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 781 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 617 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 781 Contig length: 599 Avg. contig coverage: 1 Consensus contains: A: 162 C: 146 G: 137 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 599 Reads contain 599 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 782 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 616 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 782 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 109 C: 80 G: 107 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 783 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 615 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 783 Contig length: 553 Avg. contig coverage: 1 Consensus contains: A: 138 C: 111 G: 169 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 553 Reads contain 553 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 784 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 614 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 784 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 147 C: 106 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 785 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 613 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 785 Contig length: 552 Avg. contig coverage: 1 Consensus contains: A: 123 C: 145 G: 141 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 552 Reads contain 552 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 786 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 612 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 786 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 124 C: 115 G: 131 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 787 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 611 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 787 Contig length: 561 Avg. contig coverage: 1 Consensus contains: A: 169 C: 127 G: 138 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 561 Reads contain 561 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 788 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 610 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 788 Contig length: 382 Avg. contig coverage: 1 Consensus contains: A: 115 C: 83 G: 82 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 382 Reads contain 382 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 789 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 609 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 789 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 160 C: 125 G: 133 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 790 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 608 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 790 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 104 C: 137 G: 49 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 791 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 607 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 791 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 143 C: 110 G: 124 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 792 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 606 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 792 Contig length: 433 Avg. contig coverage: 1 Consensus contains: A: 150 C: 82 G: 64 T: 137 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 433 Reads contain 433 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 793 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 605 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 793 Contig length: 297 Avg. contig coverage: 1 Consensus contains: A: 101 C: 71 G: 52 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 297 Reads contain 297 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 794 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 604 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 794 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 91 C: 87 G: 68 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 795 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 603 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 795 Contig length: 291 Avg. contig coverage: 1 Consensus contains: A: 76 C: 66 G: 54 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 291 Reads contain 291 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 796 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 602 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 796 Contig length: 234 Avg. contig coverage: 1 Consensus contains: A: 64 C: 41 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 234 Reads contain 234 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 797 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 601 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 797 Contig length: 519 Avg. contig coverage: 1 Consensus contains: A: 141 C: 115 G: 96 T: 167 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 519 Reads contain 519 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 798 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 600 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 798 Contig length: 641 Avg. contig coverage: 1 Consensus contains: A: 181 C: 170 G: 127 T: 163 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 641 Reads contain 641 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 799 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 599 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 799 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 95 C: 59 G: 62 T: 136 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 352 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 800 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 598 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 800 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 150 C: 127 G: 124 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 545 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 801 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 597 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 801 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 60 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 802 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 596 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 802 Contig length: 607 Avg. contig coverage: 1 Consensus contains: A: 171 C: 121 G: 153 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 607 Reads contain 607 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 803 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 595 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 803 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 149 C: 136 G: 113 T: 176 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 804 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 594 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 804 Contig length: 170 Avg. contig coverage: 1 Consensus contains: A: 54 C: 27 G: 5 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 170 Reads contain 170 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 805 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 593 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 805 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 168 C: 108 G: 118 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 806 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 592 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 806 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 107 C: 51 G: 71 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 807 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 591 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 807 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 72 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 808 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 590 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 808 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 122 C: 91 G: 116 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 452 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 809 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 589 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 809 Contig length: 373 Avg. contig coverage: 1 Consensus contains: A: 126 C: 91 G: 73 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 373 Reads contain 373 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 810 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 588 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 810 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 127 C: 70 G: 51 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 811 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 587 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 811 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 144 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 812 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 586 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 812 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 119 C: 103 G: 129 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 813 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 585 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 813 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 158 C: 123 G: 122 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 550 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 814 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 584 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 814 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 136 C: 110 G: 102 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 815 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 583 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 815 Contig length: 283 Avg. contig coverage: 1 Consensus contains: A: 74 C: 58 G: 76 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 283 Reads contain 283 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 816 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 582 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 816 Contig length: 507 Avg. contig coverage: 1 Consensus contains: A: 154 C: 120 G: 101 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 507 Reads contain 507 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 817 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 581 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 817 Contig length: 623 Avg. contig coverage: 1 Consensus contains: A: 161 C: 164 G: 141 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 623 Reads contain 623 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 818 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 580 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 818 Contig length: 603 Avg. contig coverage: 1 Consensus contains: A: 172 C: 120 G: 123 T: 188 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 603 Reads contain 603 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 819 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 579 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 819 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 137 C: 80 G: 45 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 820 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 578 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 820 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 88 C: 103 G: 68 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 821 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 577 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 821 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 126 C: 114 G: 100 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 822 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 576 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 822 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 105 C: 110 G: 74 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 823 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 575 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 823 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 90 C: 101 G: 94 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 824 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 574 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 824 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 65 C: 56 G: 57 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 825 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 573 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 825 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 98 C: 87 G: 87 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 826 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 572 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 826 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 126 C: 99 G: 80 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 827 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 571 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 827 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 124 C: 79 G: 152 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 828 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 570 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 828 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 102 C: 42 G: 43 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 829 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 569 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 829 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 62 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 830 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 568 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 830 Contig length: 111 Avg. contig coverage: 1 Consensus contains: A: 28 C: 16 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 111 Reads contain 111 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 831 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 567 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 831 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 127 C: 66 G: 102 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 832 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 566 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 832 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 73 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 833 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 565 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 833 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 67 C: 91 G: 82 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 834 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 564 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 834 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 62 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 835 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 563 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 835 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 81 C: 80 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 836 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 562 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 836 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 127 C: 97 G: 105 T: 125 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 454 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 837 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 561 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 837 Contig length: 279 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 45 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 279 Reads contain 279 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 838 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 560 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 838 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 49 C: 79 G: 44 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 839 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 559 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 839 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 67 C: 110 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 840 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 558 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 840 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 122 C: 89 G: 59 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 841 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 557 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 841 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 122 C: 97 G: 90 T: 166 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 842 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 556 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 842 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 86 C: 123 G: 113 T: 99 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 843 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 555 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 843 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 96 C: 70 G: 72 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 844 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 554 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 844 Contig length: 284 Avg. contig coverage: 1 Consensus contains: A: 104 C: 59 G: 45 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 284 Reads contain 284 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 845 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 553 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 845 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 121 C: 102 G: 84 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 846 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 552 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 846 Contig length: 314 Avg. contig coverage: 1 Consensus contains: A: 80 C: 86 G: 59 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 314 Reads contain 314 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 847 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 551 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 847 Contig length: 230 Avg. contig coverage: 1 Consensus contains: A: 64 C: 51 G: 49 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 230 Reads contain 230 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 848 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 550 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 848 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 102 G: 80 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 849 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 549 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 849 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 84 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 850 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 548 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 850 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 107 C: 39 G: 26 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 851 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 547 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 851 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 84 C: 71 G: 90 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 852 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 546 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 852 Contig length: 218 Avg. contig coverage: 1 Consensus contains: A: 69 C: 54 G: 25 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 218 Reads contain 218 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 853 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 545 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 853 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 113 C: 112 G: 75 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 854 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 544 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 854 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 73 C: 53 G: 86 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 855 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 543 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 855 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 71 C: 58 G: 57 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 856 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 542 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 856 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 110 C: 62 G: 63 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 857 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 541 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 857 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 104 C: 73 G: 51 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 858 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 540 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 858 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 29 C: 31 G: 31 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 859 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 539 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 859 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 125 C: 95 G: 86 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 860 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 538 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 860 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 62 C: 41 G: 50 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 861 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 537 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 861 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 69 C: 65 G: 59 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 249 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 862 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 536 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 862 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 113 C: 87 G: 115 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 863 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 535 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 863 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 82 C: 109 G: 118 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 864 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 534 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 864 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 139 C: 108 G: 119 T: 112 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 478 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 865 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 533 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 865 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 97 C: 78 G: 58 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 866 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 532 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 866 Contig length: 533 Avg. contig coverage: 1 Consensus contains: A: 106 C: 173 G: 113 T: 141 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 533 Reads contain 533 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 867 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 531 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 867 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 111 C: 99 G: 110 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 868 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 530 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 868 Contig length: 544 Avg. contig coverage: 1 Consensus contains: A: 144 C: 132 G: 133 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 544 Reads contain 544 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 869 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 529 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 869 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 155 C: 114 G: 114 T: 148 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 870 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 528 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 870 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 114 C: 123 G: 125 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 871 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 527 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 871 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 60 C: 47 G: 38 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 872 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 526 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 872 Contig length: 371 Avg. contig coverage: 1 Consensus contains: A: 98 C: 90 G: 82 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 371 Reads contain 371 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 873 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 525 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 873 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 125 C: 88 G: 130 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 874 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 524 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 874 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 154 C: 137 G: 126 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 875 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 523 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 875 Contig length: 545 Avg. contig coverage: 1 Consensus contains: A: 129 C: 149 G: 122 T: 144 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 545 Reads contain 544 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 876 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 522 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 876 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 164 C: 148 G: 102 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 543 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 877 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 521 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 877 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 73 C: 87 G: 86 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 878 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 520 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 878 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 123 C: 137 G: 78 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 879 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 519 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 879 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 103 G: 43 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 880 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 518 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 880 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 107 C: 126 G: 89 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 881 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 517 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 881 Contig length: 198 Avg. contig coverage: 1 Consensus contains: A: 82 C: 34 G: 27 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 198 Reads contain 198 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 882 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 516 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 882 Contig length: 476 Avg. contig coverage: 1 Consensus contains: A: 117 C: 98 G: 136 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 476 Reads contain 476 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 883 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 515 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 883 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 88 C: 70 G: 83 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 884 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 514 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 884 Contig length: 512 Avg. contig coverage: 1 Consensus contains: A: 158 C: 103 G: 107 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 512 Reads contain 512 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 885 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 513 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 885 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 137 C: 101 G: 94 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 886 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 512 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 886 Contig length: 494 Avg. contig coverage: 1 Consensus contains: A: 137 C: 127 G: 146 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 494 Reads contain 494 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 887 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 511 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 887 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 88 C: 122 G: 85 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 888 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 510 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 888 Contig length: 282 Avg. contig coverage: 1 Consensus contains: A: 90 C: 60 G: 56 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 282 Reads contain 282 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 889 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 509 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 889 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 112 C: 64 G: 29 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 890 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 508 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 890 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 122 C: 109 G: 90 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 891 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 507 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 891 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 81 C: 95 G: 108 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 892 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 506 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 892 Contig length: 497 Avg. contig coverage: 1 Consensus contains: A: 135 C: 132 G: 91 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 497 Reads contain 497 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 893 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 505 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 893 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 114 C: 75 G: 55 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 894 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 504 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 894 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 137 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 895 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 503 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 895 Contig length: 496 Avg. contig coverage: 1 Consensus contains: A: 130 C: 103 G: 137 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 496 Reads contain 496 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 896 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 502 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 896 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 118 C: 104 G: 106 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 897 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 501 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 897 Contig length: 432 Avg. contig coverage: 1 Consensus contains: A: 106 C: 63 G: 127 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 432 Reads contain 432 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 898 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 500 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 898 Contig length: 595 Avg. contig coverage: 1 Consensus contains: A: 146 C: 124 G: 169 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 595 Reads contain 595 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 899 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 499 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 899 Contig length: 364 Avg. contig coverage: 1 Consensus contains: A: 113 C: 84 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 364 Reads contain 364 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 900 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 498 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 900 Contig length: 340 Avg. contig coverage: 1 Consensus contains: A: 93 C: 66 G: 94 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 340 Reads contain 340 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 901 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 497 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 901 Contig length: 273 Avg. contig coverage: 1 Consensus contains: A: 63 C: 55 G: 79 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 273 Reads contain 273 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 902 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 496 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 902 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 136 C: 81 G: 118 T: 213 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 548 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 903 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 495 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 903 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 106 C: 78 G: 114 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 904 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 494 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 904 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 42 C: 52 G: 44 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 905 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 493 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 905 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 98 C: 81 G: 72 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 906 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 492 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 906 Contig length: 442 Avg. contig coverage: 1 Consensus contains: A: 139 C: 107 G: 103 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 442 Reads contain 442 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 907 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 491 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 907 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 86 C: 96 G: 103 T: 71 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 908 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 490 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 908 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 111 C: 81 G: 96 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 909 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 489 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 909 Contig length: 125 Avg. contig coverage: 1 Consensus contains: A: 36 C: 29 G: 23 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 125 Reads contain 125 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 910 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 488 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 910 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 108 C: 75 G: 97 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 385 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 911 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 487 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 911 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 130 C: 90 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 912 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 486 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 912 Contig length: 411 Avg. contig coverage: 1 Consensus contains: A: 101 C: 85 G: 107 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 411 Reads contain 411 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 913 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 485 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 913 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 156 C: 88 G: 35 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 914 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 484 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 914 Contig length: 439 Avg. contig coverage: 1 Consensus contains: A: 105 C: 112 G: 97 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 439 Reads contain 439 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 915 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 483 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 915 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 138 C: 117 G: 97 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 916 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 482 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 916 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 125 C: 124 G: 132 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 917 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 481 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 917 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 64 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 918 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 480 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 918 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 128 C: 105 G: 76 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 919 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 479 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 919 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 93 C: 79 G: 118 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 920 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 478 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 920 Contig length: 294 Avg. contig coverage: 1 Consensus contains: A: 102 C: 61 G: 47 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 294 Reads contain 294 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 921 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 477 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 921 Contig length: 414 Avg. contig coverage: 1 Consensus contains: A: 132 C: 110 G: 66 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 414 Reads contain 414 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 922 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 476 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 922 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 124 C: 84 G: 109 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 923 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 475 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 923 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 121 C: 100 G: 133 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 924 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 474 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 924 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 116 C: 128 G: 87 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 925 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 473 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 925 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 114 C: 111 G: 89 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 926 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 472 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 926 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 47 C: 72 G: 41 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 927 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 471 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 927 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 112 C: 107 G: 125 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 928 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 470 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 928 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 95 C: 107 G: 120 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 929 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 469 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 929 Contig length: 448 Avg. contig coverage: 1 Consensus contains: A: 144 C: 98 G: 89 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 448 Reads contain 448 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 930 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 468 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 930 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 88 C: 37 G: 17 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 931 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 467 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 931 Contig length: 130 Avg. contig coverage: 1 Consensus contains: A: 30 C: 27 G: 40 T: 33 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 130 Reads contain 130 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 932 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 466 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 932 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 95 G: 94 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 933 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 465 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 933 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 130 C: 112 G: 91 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 934 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 464 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 934 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 71 C: 115 G: 74 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 935 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 463 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 935 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 66 C: 52 G: 45 T: 43 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 936 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 462 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 936 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 107 C: 85 G: 87 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 399 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 937 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 461 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 937 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 152 C: 87 G: 95 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 938 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 460 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 938 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 128 C: 70 G: 96 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 939 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 459 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 939 Contig length: 492 Avg. contig coverage: 1 Consensus contains: A: 156 C: 82 G: 112 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 492 Reads contain 492 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 940 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 458 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 940 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 94 C: 57 G: 116 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 941 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 457 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 941 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 127 C: 100 G: 117 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 446 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 942 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 456 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 942 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 72 C: 94 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 943 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 455 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 943 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 46 C: 57 G: 55 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 944 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 454 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 944 Contig length: 472 Avg. contig coverage: 1 Consensus contains: A: 128 C: 101 G: 101 T: 140 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 472 Reads contain 470 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 945 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 453 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 945 Contig length: 550 Avg. contig coverage: 1 Consensus contains: A: 133 C: 126 G: 145 T: 145 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 550 Reads contain 549 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 946 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 452 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 946 Contig length: 548 Avg. contig coverage: 1 Consensus contains: A: 137 C: 155 G: 115 T: 140 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 548 Reads contain 547 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 947 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 451 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 947 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 93 C: 102 G: 92 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 948 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 450 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 948 Contig length: 197 Avg. contig coverage: 1 Consensus contains: A: 76 C: 46 G: 17 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 197 Reads contain 197 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 949 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 449 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 949 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 99 C: 86 G: 74 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 950 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 448 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 950 Contig length: 184 Avg. contig coverage: 1 Consensus contains: A: 47 C: 46 G: 50 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 184 Reads contain 184 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 951 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 447 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 951 Contig length: 133 Avg. contig coverage: 1 Consensus contains: A: 45 C: 21 G: 31 T: 36 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 133 Reads contain 133 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 952 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 446 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 952 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 96 C: 81 G: 90 T: 96 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 363 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 953 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 445 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 953 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 103 G: 83 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 954 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 444 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 954 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 134 C: 98 G: 115 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 955 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 443 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 955 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 82 C: 98 G: 74 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 375 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 956 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 442 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 956 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 115 C: 75 G: 57 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 957 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 441 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 957 Contig length: 99 Avg. contig coverage: 1 Consensus contains: A: 40 C: 15 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 99 Reads contain 99 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 958 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 440 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 958 Contig length: 253 Avg. contig coverage: 1 Consensus contains: A: 79 C: 64 G: 46 T: 64 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 253 Reads contain 253 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 959 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 439 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 959 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 45 C: 54 G: 52 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 960 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 438 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 960 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 106 C: 79 G: 101 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 961 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 437 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 961 Contig length: 307 Avg. contig coverage: 1 Consensus contains: A: 78 C: 80 G: 53 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 307 Reads contain 307 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 962 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 436 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 962 Contig length: 430 Avg. contig coverage: 1 Consensus contains: A: 121 C: 85 G: 105 T: 117 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 430 Reads contain 428 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 963 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 435 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 963 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 107 C: 95 G: 82 T: 114 N: 5 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 398 bases, 5 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 964 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 434 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 964 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 118 C: 105 G: 101 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 965 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 433 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 965 Contig length: 178 Avg. contig coverage: 1 Consensus contains: A: 61 C: 39 G: 31 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 178 Reads contain 178 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 966 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 432 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 966 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 23 C: 19 G: 40 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 967 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 431 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 967 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 94 C: 69 G: 101 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 968 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 430 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 968 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 98 C: 63 G: 75 T: 120 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 969 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 429 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 969 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 120 C: 104 G: 87 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 970 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 428 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 970 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 117 C: 113 G: 107 T: 149 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 486 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 971 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 427 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 971 Contig length: 228 Avg. contig coverage: 1 Consensus contains: A: 61 C: 49 G: 52 T: 66 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 228 Reads contain 228 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 972 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 426 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 972 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 102 G: 109 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 973 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 425 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 973 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 80 C: 102 G: 104 T: 105 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 391 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 974 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 424 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 974 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 99 C: 72 G: 85 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 375 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 975 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 423 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 975 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 69 C: 67 G: 129 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 976 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 422 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 976 Contig length: 124 Avg. contig coverage: 1 Consensus contains: A: 50 C: 22 G: 24 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 124 Reads contain 124 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 977 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 421 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 977 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 75 C: 63 G: 94 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 978 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 420 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 978 Contig length: 188 Avg. contig coverage: 1 Consensus contains: A: 49 C: 44 G: 54 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 188 Reads contain 188 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 979 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 419 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 979 Contig length: 123 Avg. contig coverage: 1 Consensus contains: A: 23 C: 43 G: 29 T: 28 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 123 Reads contain 123 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 980 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 418 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 980 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 118 C: 90 G: 81 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 398 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 981 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 417 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 981 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 110 C: 122 G: 92 T: 163 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 487 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 982 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 416 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 982 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 118 C: 144 G: 110 T: 133 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 505 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 983 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 415 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 983 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 53 C: 36 G: 81 T: 46 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 984 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 414 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 984 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 112 C: 125 G: 77 T: 126 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 440 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 985 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 413 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 985 Contig length: 241 Avg. contig coverage: 1 Consensus contains: A: 57 C: 58 G: 64 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 241 Reads contain 241 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 986 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 412 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 986 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 107 C: 119 G: 88 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 442 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 987 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 411 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 987 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 93 C: 82 G: 74 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 988 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 410 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 988 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 90 C: 99 G: 99 T: 102 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 390 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 989 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 409 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 989 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 124 C: 88 G: 89 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 990 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 408 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 990 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 81 C: 89 G: 101 T: 95 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 366 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 991 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 407 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 991 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 103 C: 109 G: 91 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 441 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 992 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 406 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 992 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 115 C: 58 G: 27 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 993 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 405 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 993 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 57 C: 56 G: 42 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 994 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 404 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 994 Contig length: 452 Avg. contig coverage: 1 Consensus contains: A: 110 C: 119 G: 106 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 452 Reads contain 451 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 995 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 403 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 995 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 109 C: 94 G: 96 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 996 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 402 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 996 Contig length: 304 Avg. contig coverage: 1 Consensus contains: A: 105 C: 58 G: 52 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 304 Reads contain 304 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 997 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 401 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 997 Contig length: 383 Avg. contig coverage: 1 Consensus contains: A: 105 C: 94 G: 96 T: 86 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 383 Reads contain 381 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 998 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 400 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 998 Contig length: 186 Avg. contig coverage: 1 Consensus contains: A: 84 C: 40 G: 21 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 186 Reads contain 186 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 999 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 399 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 999 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 103 C: 77 G: 156 T: 138 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 474 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1000 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 398 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1000 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 29 C: 37 G: 32 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1001 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 397 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1001 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 146 C: 96 G: 124 T: 138 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 504 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1002 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 396 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1002 Contig length: 528 Avg. contig coverage: 1 Consensus contains: A: 138 C: 144 G: 78 T: 166 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 528 Reads contain 526 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1003 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 395 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1003 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 54 C: 72 G: 57 T: 88 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 271 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1004 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 394 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1004 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 73 C: 97 G: 56 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1005 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 393 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1005 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 55 C: 57 G: 51 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1006 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 392 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1006 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 51 C: 56 G: 50 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1007 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 391 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1007 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 107 C: 102 G: 80 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1008 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 390 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1008 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 56 C: 43 G: 67 T: 57 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1009 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 389 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1009 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 167 C: 100 G: 49 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1010 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 388 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1010 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 103 C: 78 G: 110 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1011 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 387 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1011 Contig length: 278 Avg. contig coverage: 1 Consensus contains: A: 102 C: 64 G: 35 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 278 Reads contain 278 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1012 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 386 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1012 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 55 C: 60 G: 43 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1013 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 385 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1013 Contig length: 213 Avg. contig coverage: 1 Consensus contains: A: 50 C: 88 G: 26 T: 49 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 213 Reads contain 213 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1014 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 384 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1014 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 107 C: 113 G: 90 T: 135 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 445 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1015 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 383 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1015 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 93 C: 58 G: 92 T: 79 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1016 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 382 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1016 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 108 C: 108 G: 111 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1017 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 381 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1017 Contig length: 287 Avg. contig coverage: 1 Consensus contains: A: 79 C: 74 G: 68 T: 65 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 287 Reads contain 286 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1018 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 380 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1018 Contig length: 191 Avg. contig coverage: 1 Consensus contains: A: 52 C: 46 G: 39 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 191 Reads contain 191 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1019 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 379 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1019 Contig length: 115 Avg. contig coverage: 1 Consensus contains: A: 33 C: 38 G: 19 T: 25 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 115 Reads contain 115 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1020 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 378 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1020 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 84 C: 56 G: 85 T: 119 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 344 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1021 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 377 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1021 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 141 C: 116 G: 81 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1022 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 376 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1022 Contig length: 300 Avg. contig coverage: 1 Consensus contains: A: 104 C: 74 G: 44 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 300 Reads contain 300 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1023 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 375 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1023 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 71 C: 82 G: 76 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1024 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 374 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1024 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 56 C: 61 G: 33 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1025 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 373 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1025 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 92 C: 81 G: 117 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1026 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 372 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1026 Contig length: 203 Avg. contig coverage: 1 Consensus contains: A: 57 C: 50 G: 43 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 203 Reads contain 203 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1027 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 371 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1027 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 55 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1028 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 370 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1028 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 113 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1029 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 369 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1029 Contig length: 101 Avg. contig coverage: 1 Consensus contains: A: 24 C: 41 G: 14 T: 22 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 101 Reads contain 101 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1030 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 368 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1030 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 55 C: 47 G: 39 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1031 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 367 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1031 Contig length: 415 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 100 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 415 Reads contain 415 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1032 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 366 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1032 Contig length: 250 Avg. contig coverage: 1 Consensus contains: A: 62 C: 65 G: 56 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 250 Reads contain 250 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1033 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 365 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1033 Contig length: 214 Avg. contig coverage: 1 Consensus contains: A: 50 C: 45 G: 66 T: 53 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 214 Reads contain 214 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1034 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 364 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1034 Contig length: 152 Avg. contig coverage: 1 Consensus contains: A: 37 C: 41 G: 39 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 152 Reads contain 152 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1035 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 363 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1035 Contig length: 257 Avg. contig coverage: 1 Consensus contains: A: 89 C: 53 G: 43 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 257 Reads contain 257 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1036 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 362 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1036 Contig length: 446 Avg. contig coverage: 1 Consensus contains: A: 126 C: 75 G: 127 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 446 Reads contain 445 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1037 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 361 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1037 Contig length: 227 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 64 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 227 Reads contain 227 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1038 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 360 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1038 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 96 G: 77 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1039 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 359 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1039 Contig length: 531 Avg. contig coverage: 1 Consensus contains: A: 150 C: 142 G: 123 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 531 Reads contain 531 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1040 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 358 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1040 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 118 C: 93 G: 74 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 396 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1041 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 357 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1041 Contig length: 493 Avg. contig coverage: 1 Consensus contains: A: 156 C: 125 G: 82 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 493 Reads contain 493 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1042 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 356 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1042 Contig length: 403 Avg. contig coverage: 1 Consensus contains: A: 92 C: 109 G: 86 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 403 Reads contain 403 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1043 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 355 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1043 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 131 C: 128 G: 115 T: 144 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1044 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 354 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1044 Contig length: 506 Avg. contig coverage: 1 Consensus contains: A: 143 C: 79 G: 122 T: 162 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 506 Reads contain 506 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1045 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 353 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1045 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 115 C: 104 G: 100 T: 134 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 453 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1046 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 352 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1046 Contig length: 328 Avg. contig coverage: 1 Consensus contains: A: 122 C: 78 G: 45 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 328 Reads contain 328 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1047 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 351 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1047 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 105 C: 69 G: 108 T: 107 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 389 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1048 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 350 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1048 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 61 C: 86 G: 82 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1049 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 349 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1049 Contig length: 502 Avg. contig coverage: 1 Consensus contains: A: 146 C: 89 G: 135 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 502 Reads contain 502 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1050 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 348 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1050 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 107 C: 88 G: 103 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1051 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 347 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1051 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 63 C: 79 G: 101 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1052 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 346 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1052 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 141 C: 87 G: 94 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1053 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 345 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1053 Contig length: 505 Avg. contig coverage: 1 Consensus contains: A: 118 C: 92 G: 120 T: 175 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 505 Reads contain 505 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1054 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 344 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1054 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 80 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1055 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 343 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1055 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 77 C: 77 G: 73 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1056 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 342 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1056 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 94 C: 110 G: 91 T: 74 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 369 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1057 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 341 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1057 Contig length: 511 Avg. contig coverage: 1 Consensus contains: A: 154 C: 103 G: 99 T: 154 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 511 Reads contain 510 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1058 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 340 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1058 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 125 C: 120 G: 120 T: 119 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 484 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1059 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 339 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1059 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 117 C: 97 G: 127 T: 116 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 457 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1060 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 338 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1060 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 104 C: 154 G: 89 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 425 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1061 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 337 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1061 Contig length: 363 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 76 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 363 Reads contain 363 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1062 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 336 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1062 Contig length: 206 Avg. contig coverage: 1 Consensus contains: A: 47 C: 55 G: 52 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 206 Reads contain 206 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1063 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 335 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1063 Contig length: 469 Avg. contig coverage: 1 Consensus contains: A: 93 C: 131 G: 119 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 469 Reads contain 469 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1064 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 334 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1064 Contig length: 86 Avg. contig coverage: 1 Consensus contains: A: 36 C: 17 G: 12 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 86 Reads contain 86 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1065 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 333 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1065 Contig length: 388 Avg. contig coverage: 1 Consensus contains: A: 111 C: 100 G: 71 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 388 Reads contain 388 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1066 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 332 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1066 Contig length: 325 Avg. contig coverage: 1 Consensus contains: A: 76 C: 81 G: 92 T: 76 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 325 Reads contain 325 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1067 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 331 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1067 Contig length: 96 Avg. contig coverage: 1 Consensus contains: A: 24 C: 16 G: 25 T: 31 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 96 Reads contain 96 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1068 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 330 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1068 Contig length: 486 Avg. contig coverage: 1 Consensus contains: A: 126 C: 117 G: 114 T: 128 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 486 Reads contain 485 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1069 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 329 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1069 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 117 C: 65 G: 93 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1070 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 328 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1070 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 106 C: 87 G: 69 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1071 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 327 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1071 Contig length: 467 Avg. contig coverage: 1 Consensus contains: A: 110 C: 142 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 467 Reads contain 467 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1072 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 326 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1072 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 116 C: 83 G: 84 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1073 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 325 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1073 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 171 C: 107 G: 72 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1074 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 324 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1074 Contig length: 313 Avg. contig coverage: 1 Consensus contains: A: 94 C: 56 G: 81 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 313 Reads contain 313 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1075 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 323 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1075 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 57 C: 40 G: 58 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1076 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 322 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1076 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 121 C: 77 G: 51 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1077 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 321 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1077 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 135 C: 73 G: 84 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1078 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 320 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1078 Contig length: 447 Avg. contig coverage: 1 Consensus contains: A: 135 C: 98 G: 104 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 447 Reads contain 447 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1079 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 319 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1079 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 107 C: 96 G: 140 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 485 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1080 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 318 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1080 Contig length: 108 Avg. contig coverage: 1 Consensus contains: A: 35 C: 2 G: 45 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 108 Reads contain 108 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1081 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 317 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1081 Contig length: 489 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 89 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 489 Reads contain 489 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1082 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 316 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1082 Contig length: 536 Avg. contig coverage: 1 Consensus contains: A: 141 C: 122 G: 122 T: 151 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 536 Reads contain 536 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1083 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 315 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1083 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 91 C: 80 G: 75 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1084 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 314 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1084 Contig length: 457 Avg. contig coverage: 1 Consensus contains: A: 130 C: 106 G: 104 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 457 Reads contain 457 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1085 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 313 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1085 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 95 C: 68 G: 143 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1086 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 312 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1086 Contig length: 539 Avg. contig coverage: 1 Consensus contains: A: 139 C: 101 G: 142 T: 157 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 539 Reads contain 539 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1087 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 311 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1087 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 114 C: 82 G: 109 T: 126 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1088 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 310 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1088 Contig length: 399 Avg. contig coverage: 1 Consensus contains: A: 103 C: 103 G: 75 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 399 Reads contain 399 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1089 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 309 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1089 Contig length: 541 Avg. contig coverage: 1 Consensus contains: A: 190 C: 98 G: 137 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 541 Reads contain 541 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1090 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 308 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1090 Contig length: 343 Avg. contig coverage: 1 Consensus contains: A: 65 C: 95 G: 93 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 343 Reads contain 343 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1091 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 307 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1091 Contig length: 461 Avg. contig coverage: 1 Consensus contains: A: 133 C: 123 G: 90 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 461 Reads contain 461 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1092 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 306 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1092 Contig length: 437 Avg. contig coverage: 1 Consensus contains: A: 120 C: 100 G: 88 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 437 Reads contain 437 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1093 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 305 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1093 Contig length: 424 Avg. contig coverage: 1 Consensus contains: A: 121 C: 74 G: 93 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 424 Reads contain 424 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1094 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 304 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1094 Contig length: 244 Avg. contig coverage: 1 Consensus contains: A: 107 C: 43 G: 47 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 244 Reads contain 244 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1095 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 303 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1095 Contig length: 503 Avg. contig coverage: 1 Consensus contains: A: 143 C: 125 G: 121 T: 113 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 503 Reads contain 502 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1096 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 302 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1096 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 120 C: 160 G: 92 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1097 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 301 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1097 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 156 C: 89 G: 130 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1098 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 300 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1098 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 87 C: 91 G: 122 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1099 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 299 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1099 Contig length: 465 Avg. contig coverage: 1 Consensus contains: A: 102 C: 81 G: 151 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 465 Reads contain 465 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1100 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 298 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1100 Contig length: 535 Avg. contig coverage: 1 Consensus contains: A: 149 C: 116 G: 116 T: 154 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 535 Reads contain 535 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1101 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 297 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1101 Contig length: 158 Avg. contig coverage: 1 Consensus contains: A: 32 C: 39 G: 40 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 158 Reads contain 158 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1102 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 296 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1102 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 124 C: 63 G: 88 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1103 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 295 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1103 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 84 G: 98 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1104 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 294 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1104 Contig length: 482 Avg. contig coverage: 1 Consensus contains: A: 119 C: 97 G: 101 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 482 Reads contain 482 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1105 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 293 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1105 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 152 C: 93 G: 115 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1106 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 292 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1106 Contig length: 377 Avg. contig coverage: 1 Consensus contains: A: 74 C: 88 G: 99 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 377 Reads contain 377 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1107 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 291 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1107 Contig length: 462 Avg. contig coverage: 1 Consensus contains: A: 161 C: 110 G: 70 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 462 Reads contain 462 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1108 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 290 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1108 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 130 C: 53 G: 126 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1109 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 289 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1109 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 132 C: 94 G: 114 T: 128 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1110 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 288 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1110 Contig length: 483 Avg. contig coverage: 1 Consensus contains: A: 124 C: 152 G: 95 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 483 Reads contain 483 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1111 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 287 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1111 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 165 C: 112 G: 148 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1112 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 286 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1112 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 95 C: 72 G: 92 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1113 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 285 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1113 Contig length: 341 Avg. contig coverage: 1 Consensus contains: A: 103 C: 52 G: 62 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 341 Reads contain 341 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1114 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 284 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1114 Contig length: 311 Avg. contig coverage: 1 Consensus contains: A: 72 C: 88 G: 81 T: 70 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 311 Reads contain 311 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1115 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 283 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1115 Contig length: 391 Avg. contig coverage: 1 Consensus contains: A: 119 C: 55 G: 97 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 391 Reads contain 391 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1116 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 282 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1116 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 118 C: 80 G: 106 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1117 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 281 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1117 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 97 C: 98 G: 111 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 427 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1118 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 280 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1118 Contig length: 201 Avg. contig coverage: 1 Consensus contains: A: 56 C: 53 G: 57 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 201 Reads contain 201 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1119 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 279 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1119 Contig length: 427 Avg. contig coverage: 1 Consensus contains: A: 131 C: 107 G: 96 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 427 Reads contain 426 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1120 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 278 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1120 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 74 C: 75 G: 64 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1121 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 277 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1121 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 83 C: 77 G: 97 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1122 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 276 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1122 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 109 C: 61 G: 77 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1123 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 275 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1123 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 51 C: 32 G: 72 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1124 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 274 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1124 Contig length: 445 Avg. contig coverage: 1 Consensus contains: A: 110 C: 90 G: 135 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 445 Reads contain 444 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1125 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 273 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1125 Contig length: 249 Avg. contig coverage: 1 Consensus contains: A: 70 C: 67 G: 52 T: 59 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 249 Reads contain 248 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1126 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 272 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1126 Contig length: 380 Avg. contig coverage: 1 Consensus contains: A: 133 C: 74 G: 82 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 380 Reads contain 380 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1127 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 271 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1127 Contig length: 333 Avg. contig coverage: 1 Consensus contains: A: 79 C: 37 G: 99 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 333 Reads contain 333 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1128 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 270 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1128 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 105 C: 97 G: 70 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1129 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 269 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1129 Contig length: 212 Avg. contig coverage: 1 Consensus contains: A: 54 C: 49 G: 55 T: 54 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 212 Reads contain 212 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1130 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 268 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1130 Contig length: 385 Avg. contig coverage: 1 Consensus contains: A: 116 C: 80 G: 77 T: 110 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 385 Reads contain 383 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1131 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 267 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1131 Contig length: 347 Avg. contig coverage: 1 Consensus contains: A: 79 C: 62 G: 75 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 347 Reads contain 347 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1132 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 266 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1132 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 131 C: 81 G: 53 T: 90 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 355 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1133 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 265 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1133 Contig length: 530 Avg. contig coverage: 1 Consensus contains: A: 164 C: 108 G: 146 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 530 Reads contain 529 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1134 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 264 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1134 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 138 C: 75 G: 65 T: 61 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1135 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 263 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1135 Contig length: 181 Avg. contig coverage: 1 Consensus contains: A: 42 C: 28 G: 49 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 181 Reads contain 181 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1136 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 262 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1136 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 102 T: 121 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 412 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1137 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 261 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1137 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 66 G: 80 T: 93 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 333 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1138 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 260 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1138 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 52 G: 88 T: 146 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1139 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 259 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1139 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 112 C: 92 G: 60 T: 94 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 358 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1140 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 258 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1140 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 117 C: 94 G: 40 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1141 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 257 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1141 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 90 C: 58 G: 80 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1142 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 256 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1142 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 104 C: 64 G: 89 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1143 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 255 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1143 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 96 C: 91 G: 59 T: 76 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 322 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1144 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 254 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1144 Contig length: 353 Avg. contig coverage: 1 Consensus contains: A: 116 C: 61 G: 80 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 353 Reads contain 353 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1145 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 253 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1145 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 96 C: 77 G: 83 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1146 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 252 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1146 Contig length: 277 Avg. contig coverage: 1 Consensus contains: A: 65 C: 64 G: 68 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 277 Reads contain 277 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1147 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 251 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1147 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 46 C: 69 G: 109 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1148 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 250 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1148 Contig length: 317 Avg. contig coverage: 1 Consensus contains: A: 69 C: 81 G: 81 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 317 Reads contain 317 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1149 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 249 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1149 Contig length: 490 Avg. contig coverage: 1 Consensus contains: A: 135 C: 87 G: 120 T: 144 N: 4 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 490 Reads contain 486 bases, 4 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1150 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 248 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1150 Contig length: 310 Avg. contig coverage: 1 Consensus contains: A: 92 C: 57 G: 69 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 310 Reads contain 310 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1151 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 247 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1151 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 98 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1152 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 246 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1152 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 100 C: 97 G: 75 T: 74 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1153 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 245 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1153 Contig length: 425 Avg. contig coverage: 1 Consensus contains: A: 106 C: 71 G: 130 T: 117 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 425 Reads contain 424 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1154 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 244 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1154 Contig length: 421 Avg. contig coverage: 1 Consensus contains: A: 125 C: 74 G: 110 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 421 Reads contain 421 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1155 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 243 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1155 Contig length: 180 Avg. contig coverage: 1 Consensus contains: A: 42 C: 36 G: 70 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 180 Reads contain 180 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1156 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 242 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1156 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 108 C: 78 G: 100 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 378 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1157 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 241 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1157 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 94 C: 86 G: 78 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1158 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 240 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1158 Contig length: 412 Avg. contig coverage: 1 Consensus contains: A: 118 C: 71 G: 110 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 412 Reads contain 412 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1159 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 239 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1159 Contig length: 458 Avg. contig coverage: 1 Consensus contains: A: 135 C: 82 G: 85 T: 156 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 458 Reads contain 458 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1160 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 238 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1160 Contig length: 485 Avg. contig coverage: 1 Consensus contains: A: 147 C: 128 G: 100 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 485 Reads contain 484 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1161 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 237 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1161 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 103 C: 73 G: 118 T: 114 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 408 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1162 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 236 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1162 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 85 C: 86 G: 83 T: 80 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1163 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 235 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1163 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 53 C: 70 G: 111 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1164 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 234 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1164 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 73 C: 65 G: 68 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1165 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 233 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1165 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 81 C: 93 G: 129 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1166 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 232 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1166 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 70 C: 103 G: 76 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1167 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 231 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1167 Contig length: 498 Avg. contig coverage: 1 Consensus contains: A: 131 C: 89 G: 147 T: 131 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 498 Reads contain 498 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1168 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 230 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1168 Contig length: 157 Avg. contig coverage: 1 Consensus contains: A: 31 C: 55 G: 39 T: 32 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 157 Reads contain 157 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1169 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 229 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1169 Contig length: 401 Avg. contig coverage: 1 Consensus contains: A: 116 C: 92 G: 121 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 401 Reads contain 401 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1170 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 228 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1170 Contig length: 258 Avg. contig coverage: 1 Consensus contains: A: 67 C: 53 G: 82 T: 56 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 258 Reads contain 258 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1171 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 227 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1171 Contig length: 117 Avg. contig coverage: 1 Consensus contains: A: 42 C: 21 G: 12 T: 42 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 117 Reads contain 117 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1172 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 226 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1172 Contig length: 289 Avg. contig coverage: 1 Consensus contains: A: 75 C: 48 G: 93 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 289 Reads contain 289 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1173 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 225 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1173 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 101 C: 74 G: 90 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 373 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1174 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 224 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1174 Contig length: 309 Avg. contig coverage: 1 Consensus contains: A: 74 C: 67 G: 82 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 309 Reads contain 309 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1175 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 223 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1175 Contig length: 422 Avg. contig coverage: 1 Consensus contains: A: 108 C: 105 G: 102 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 422 Reads contain 422 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1176 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 222 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1176 Contig length: 210 Avg. contig coverage: 1 Consensus contains: A: 79 C: 39 G: 42 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 210 Reads contain 210 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1177 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 221 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1177 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 98 C: 82 G: 75 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1178 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 220 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1178 Contig length: 409 Avg. contig coverage: 1 Consensus contains: A: 131 C: 82 G: 88 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 409 Reads contain 409 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1179 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 219 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1179 Contig length: 179 Avg. contig coverage: 1 Consensus contains: A: 47 C: 30 G: 40 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 179 Reads contain 179 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1180 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 218 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1180 Contig length: 420 Avg. contig coverage: 1 Consensus contains: A: 121 C: 109 G: 108 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 420 Reads contain 420 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1181 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 217 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1181 Contig length: 270 Avg. contig coverage: 1 Consensus contains: A: 71 C: 75 G: 72 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 270 Reads contain 270 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1182 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 216 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1182 Contig length: 225 Avg. contig coverage: 1 Consensus contains: A: 58 C: 47 G: 65 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 225 Reads contain 225 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1183 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 215 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1183 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 141 C: 88 G: 69 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1184 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 214 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1184 Contig length: 369 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 65 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 369 Reads contain 369 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1185 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 213 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1185 Contig length: 292 Avg. contig coverage: 1 Consensus contains: A: 75 C: 79 G: 76 T: 62 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 292 Reads contain 292 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1186 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 212 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1186 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 98 C: 138 G: 110 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1187 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 211 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1187 Contig length: 515 Avg. contig coverage: 1 Consensus contains: A: 139 C: 160 G: 99 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 515 Reads contain 515 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1188 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 210 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1188 Contig length: 264 Avg. contig coverage: 1 Consensus contains: A: 86 C: 33 G: 51 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 264 Reads contain 264 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1189 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 209 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1189 Contig length: 320 Avg. contig coverage: 1 Consensus contains: A: 69 C: 95 G: 68 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 320 Reads contain 320 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1190 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 208 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1190 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 85 C: 58 G: 93 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1191 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 207 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1191 Contig length: 455 Avg. contig coverage: 1 Consensus contains: A: 118 C: 122 G: 88 T: 127 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 455 Reads contain 455 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1192 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 206 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1192 Contig length: 396 Avg. contig coverage: 1 Consensus contains: A: 101 C: 88 G: 95 T: 111 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 396 Reads contain 395 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1193 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 205 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1193 Contig length: 342 Avg. contig coverage: 1 Consensus contains: A: 84 C: 83 G: 66 T: 109 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 342 Reads contain 342 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1194 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 204 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1194 Contig length: 379 Avg. contig coverage: 1 Consensus contains: A: 160 C: 66 G: 64 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 379 Reads contain 379 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1195 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 203 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1195 Contig length: 479 Avg. contig coverage: 1 Consensus contains: A: 116 C: 112 G: 111 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 479 Reads contain 479 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1196 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 202 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1196 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 75 G: 66 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1197 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 201 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1197 Contig length: 326 Avg. contig coverage: 1 Consensus contains: A: 94 C: 70 G: 93 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 326 Reads contain 326 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1198 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 200 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1198 Contig length: 488 Avg. contig coverage: 1 Consensus contains: A: 143 C: 122 G: 98 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 488 Reads contain 488 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1199 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 199 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1199 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 43 C: 54 G: 69 T: 45 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1200 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 198 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1200 Contig length: 238 Avg. contig coverage: 1 Consensus contains: A: 54 C: 53 G: 58 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 238 Reads contain 238 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1201 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 197 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1201 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 93 G: 84 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1202 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 196 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1202 Contig length: 196 Avg. contig coverage: 1 Consensus contains: A: 53 C: 47 G: 49 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 196 Reads contain 196 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1203 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 195 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1203 Contig length: 303 Avg. contig coverage: 1 Consensus contains: A: 75 C: 71 G: 69 T: 82 N: 6 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 303 Reads contain 297 bases, 6 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1204 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 194 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1204 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 85 C: 95 G: 68 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 338 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1205 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 193 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1205 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 79 C: 90 G: 98 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1206 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 192 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1206 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 61 C: 153 G: 63 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1207 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 191 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1207 Contig length: 346 Avg. contig coverage: 1 Consensus contains: A: 99 C: 81 G: 68 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 346 Reads contain 346 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1208 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 190 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1208 Contig length: 408 Avg. contig coverage: 1 Consensus contains: A: 120 C: 99 G: 78 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 408 Reads contain 408 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1209 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 189 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1209 Contig length: 524 Avg. contig coverage: 1 Consensus contains: A: 134 C: 126 G: 107 T: 155 N: 2 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 524 Reads contain 522 bases, 2 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1210 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 188 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1210 Contig length: 331 Avg. contig coverage: 1 Consensus contains: A: 87 C: 64 G: 88 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 331 Reads contain 331 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1211 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 187 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1211 Contig length: 400 Avg. contig coverage: 1 Consensus contains: A: 89 C: 105 G: 109 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 400 Reads contain 400 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1212 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 186 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1212 Contig length: 366 Avg. contig coverage: 1 Consensus contains: A: 118 C: 74 G: 77 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 366 Reads contain 366 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1213 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 185 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1213 Contig length: 365 Avg. contig coverage: 1 Consensus contains: A: 97 C: 85 G: 69 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 365 Reads contain 365 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1214 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 184 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1214 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 116 C: 60 G: 104 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1215 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 183 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1215 Contig length: 147 Avg. contig coverage: 1 Consensus contains: A: 31 C: 30 G: 49 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 147 Reads contain 147 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1216 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 182 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1216 Contig length: 387 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 387 Reads contain 387 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1217 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 181 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1217 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 99 C: 50 G: 74 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1218 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 180 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1218 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 94 C: 81 G: 67 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 334 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1219 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 179 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1219 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 87 C: 93 G: 102 T: 89 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 371 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1220 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 178 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1220 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 92 C: 54 G: 124 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1221 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 177 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1221 Contig length: 334 Avg. contig coverage: 1 Consensus contains: A: 88 C: 87 G: 81 T: 75 N: 3 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 334 Reads contain 331 bases, 3 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1222 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 176 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1222 Contig length: 324 Avg. contig coverage: 1 Consensus contains: A: 83 C: 88 G: 55 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 324 Reads contain 324 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1223 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 175 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1223 Contig length: 481 Avg. contig coverage: 1 Consensus contains: A: 156 C: 87 G: 95 T: 143 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 481 Reads contain 481 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1224 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 174 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1224 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 80 C: 87 G: 84 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1225 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 173 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1225 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 97 C: 95 G: 77 T: 85 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 354 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1226 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 172 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1226 Contig length: 190 Avg. contig coverage: 1 Consensus contains: A: 74 C: 29 G: 27 T: 60 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 190 Reads contain 190 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1227 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 171 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1227 Contig length: 410 Avg. contig coverage: 1 Consensus contains: A: 106 C: 109 G: 84 T: 110 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 410 Reads contain 409 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1228 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 170 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1228 Contig length: 390 Avg. contig coverage: 1 Consensus contains: A: 103 C: 90 G: 100 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 390 Reads contain 390 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1229 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 169 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1229 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 102 C: 106 G: 113 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1230 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 168 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1230 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 137 C: 98 G: 81 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1231 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 167 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1231 Contig length: 177 Avg. contig coverage: 1 Consensus contains: A: 53 C: 29 G: 51 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 177 Reads contain 177 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1232 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 166 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1232 Contig length: 407 Avg. contig coverage: 1 Consensus contains: A: 162 C: 82 G: 56 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 407 Reads contain 407 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1233 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 165 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1233 Contig length: 272 Avg. contig coverage: 1 Consensus contains: A: 81 C: 65 G: 57 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 272 Reads contain 272 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1234 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 164 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1234 Contig length: 527 Avg. contig coverage: 1 Consensus contains: A: 119 C: 148 G: 117 T: 142 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 527 Reads contain 526 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1235 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 163 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1235 Contig length: 532 Avg. contig coverage: 1 Consensus contains: A: 110 C: 140 G: 123 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 532 Reads contain 532 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1236 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 162 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1236 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 120 C: 84 G: 108 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1237 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 161 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1237 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 19 C: 15 G: 58 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1238 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 160 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1238 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 74 C: 51 G: 71 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1239 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 159 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1239 Contig length: 474 Avg. contig coverage: 1 Consensus contains: A: 137 C: 122 G: 94 T: 121 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 474 Reads contain 474 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1240 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 158 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1240 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 74 C: 98 G: 90 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1241 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 157 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1241 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 97 C: 94 G: 98 T: 105 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1242 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 156 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1242 Contig length: 419 Avg. contig coverage: 1 Consensus contains: A: 116 C: 106 G: 72 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 419 Reads contain 419 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1243 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 155 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1243 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 134 C: 90 G: 107 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1244 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 154 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1244 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 105 C: 109 G: 123 T: 103 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1245 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 153 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1245 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 111 C: 103 G: 130 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1246 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 152 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1246 Contig length: 500 Avg. contig coverage: 1 Consensus contains: A: 148 C: 131 G: 87 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 500 Reads contain 500 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1247 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 151 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1247 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 105 C: 118 G: 88 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1248 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 150 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1248 Contig length: 261 Avg. contig coverage: 1 Consensus contains: A: 63 C: 65 G: 74 T: 59 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 261 Reads contain 261 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1249 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 149 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1249 Contig length: 335 Avg. contig coverage: 1 Consensus contains: A: 97 C: 92 G: 57 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 335 Reads contain 335 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1250 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 148 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1250 Contig length: 315 Avg. contig coverage: 1 Consensus contains: A: 73 C: 81 G: 72 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 315 Reads contain 315 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1251 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 147 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1251 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 123 C: 92 G: 106 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1252 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 146 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1252 Contig length: 336 Avg. contig coverage: 1 Consensus contains: A: 83 C: 121 G: 41 T: 91 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 336 Reads contain 336 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1253 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 145 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1253 Contig length: 293 Avg. contig coverage: 1 Consensus contains: A: 104 C: 46 G: 53 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 293 Reads contain 293 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1254 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 144 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1254 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 55 C: 25 G: 33 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1255 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 143 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1255 Contig length: 402 Avg. contig coverage: 1 Consensus contains: A: 112 C: 73 G: 85 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 402 Reads contain 402 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1256 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 142 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1256 Contig length: 142 Avg. contig coverage: 1 Consensus contains: A: 28 C: 43 G: 30 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 142 Reads contain 142 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1257 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 141 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1257 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 86 G: 84 T: 102 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1258 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 140 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1258 Contig length: 389 Avg. contig coverage: 1 Consensus contains: A: 91 C: 163 G: 57 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 389 Reads contain 389 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1259 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 139 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1259 Contig length: 350 Avg. contig coverage: 1 Consensus contains: A: 96 C: 75 G: 82 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 350 Reads contain 350 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1260 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 138 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1260 Contig length: 381 Avg. contig coverage: 1 Consensus contains: A: 90 C: 86 G: 81 T: 124 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 381 Reads contain 381 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1261 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 137 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1261 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 145 C: 123 G: 75 T: 125 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1262 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 136 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1262 Contig length: 359 Avg. contig coverage: 1 Consensus contains: A: 116 C: 82 G: 66 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 359 Reads contain 359 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1263 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 135 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1263 Contig length: 232 Avg. contig coverage: 1 Consensus contains: A: 70 C: 45 G: 59 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 232 Reads contain 232 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1264 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 134 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1264 Contig length: 526 Avg. contig coverage: 1 Consensus contains: A: 149 C: 98 G: 141 T: 138 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 526 Reads contain 526 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1265 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 133 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1265 Contig length: 176 Avg. contig coverage: 1 Consensus contains: A: 64 C: 27 G: 37 T: 48 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 176 Reads contain 176 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1266 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 132 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1266 Contig length: 471 Avg. contig coverage: 1 Consensus contains: A: 125 C: 141 G: 76 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 471 Reads contain 471 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1267 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 131 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1267 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 67 C: 100 G: 87 T: 75 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1268 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 130 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1268 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 82 C: 49 G: 117 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1269 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 129 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1269 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 88 C: 88 G: 121 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1270 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 128 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1270 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 70 C: 36 G: 60 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1271 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 127 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1271 Contig length: 426 Avg. contig coverage: 1 Consensus contains: A: 118 C: 106 G: 82 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 426 Reads contain 426 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1272 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 126 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1272 Contig length: 416 Avg. contig coverage: 1 Consensus contains: A: 88 C: 143 G: 69 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 416 Reads contain 416 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1273 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 125 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1273 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 88 C: 83 G: 99 T: 86 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1274 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 124 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1274 Contig length: 393 Avg. contig coverage: 1 Consensus contains: A: 119 C: 109 G: 80 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 393 Reads contain 393 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1275 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 123 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1275 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 128 C: 97 G: 105 T: 109 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 439 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1276 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 122 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1276 Contig length: 370 Avg. contig coverage: 1 Consensus contains: A: 146 C: 65 G: 58 T: 101 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 370 Reads contain 370 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1277 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 121 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1277 Contig length: 428 Avg. contig coverage: 1 Consensus contains: A: 165 C: 75 G: 68 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 428 Reads contain 428 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1278 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 120 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1278 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 71 C: 86 G: 91 T: 108 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 356 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1279 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 119 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1279 Contig length: 475 Avg. contig coverage: 1 Consensus contains: A: 114 C: 121 G: 100 T: 140 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 475 Reads contain 475 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1280 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 118 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1280 Contig length: 443 Avg. contig coverage: 1 Consensus contains: A: 94 C: 117 G: 122 T: 110 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 443 Reads contain 443 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1281 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 117 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1281 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 110 C: 82 G: 111 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1282 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 116 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1282 Contig length: 138 Avg. contig coverage: 1 Consensus contains: A: 40 C: 27 G: 31 T: 40 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 138 Reads contain 138 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1283 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 115 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1283 Contig length: 392 Avg. contig coverage: 1 Consensus contains: A: 106 C: 117 G: 87 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 392 Reads contain 392 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1284 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 114 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1284 Contig length: 398 Avg. contig coverage: 1 Consensus contains: A: 100 C: 77 G: 74 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 398 Reads contain 398 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1285 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 113 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1285 Contig length: 349 Avg. contig coverage: 1 Consensus contains: A: 67 C: 63 G: 111 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 349 Reads contain 349 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1286 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 112 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1286 Contig length: 547 Avg. contig coverage: 1 Consensus contains: A: 119 C: 151 G: 112 T: 165 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 547 Reads contain 547 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1287 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 111 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1287 Contig length: 242 Avg. contig coverage: 1 Consensus contains: A: 56 C: 36 G: 81 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 242 Reads contain 242 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1288 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 110 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1288 Contig length: 116 Avg. contig coverage: 1 Consensus contains: A: 37 C: 27 G: 31 T: 21 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 116 Reads contain 116 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1289 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 109 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1289 Contig length: 384 Avg. contig coverage: 1 Consensus contains: A: 48 C: 144 G: 79 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 384 Reads contain 384 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1290 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 108 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1290 Contig length: 444 Avg. contig coverage: 1 Consensus contains: A: 109 C: 101 G: 123 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 444 Reads contain 444 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1291 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 107 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1291 Contig length: 149 Avg. contig coverage: 1 Consensus contains: A: 46 C: 22 G: 40 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 149 Reads contain 149 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1292 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 106 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1292 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 99 C: 65 G: 86 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1293 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 105 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1293 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 69 C: 79 G: 86 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1294 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 104 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1294 Contig length: 122 Avg. contig coverage: 1 Consensus contains: A: 60 C: 29 G: 9 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 122 Reads contain 122 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1295 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 103 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1295 Contig length: 224 Avg. contig coverage: 1 Consensus contains: A: 51 C: 62 G: 48 T: 63 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 224 Reads contain 224 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1296 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 102 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1296 Contig length: 219 Avg. contig coverage: 1 Consensus contains: A: 58 C: 56 G: 64 T: 41 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 219 Reads contain 219 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1297 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 101 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1297 Contig length: 252 Avg. contig coverage: 1 Consensus contains: A: 72 C: 68 G: 54 T: 58 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 252 Reads contain 252 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1298 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 100 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1298 Contig length: 211 Avg. contig coverage: 1 Consensus contains: A: 46 C: 56 G: 57 T: 52 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 211 Reads contain 211 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1299 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 99 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1299 Contig length: 103 Avg. contig coverage: 1 Consensus contains: A: 32 C: 22 G: 31 T: 18 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 103 Reads contain 103 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1300 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 98 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1300 Contig length: 113 Avg. contig coverage: 1 Consensus contains: A: 27 C: 26 G: 31 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 113 Reads contain 113 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1301 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 97 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1301 Contig length: 451 Avg. contig coverage: 1 Consensus contains: A: 138 C: 91 G: 115 T: 107 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 451 Reads contain 451 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1302 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 96 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1302 Contig length: 459 Avg. contig coverage: 1 Consensus contains: A: 162 C: 48 G: 149 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 459 Reads contain 459 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1303 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 95 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1303 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 68 C: 60 G: 51 T: 92 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1304 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 94 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1304 Contig length: 288 Avg. contig coverage: 1 Consensus contains: A: 56 C: 65 G: 80 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 288 Reads contain 288 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1305 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 93 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1305 Contig length: 208 Avg. contig coverage: 1 Consensus contains: A: 47 C: 61 G: 63 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 208 Reads contain 208 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1306 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 92 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1306 Contig length: 478 Avg. contig coverage: 1 Consensus contains: A: 110 C: 128 G: 120 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 478 Reads contain 478 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1307 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 91 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1307 Contig length: 243 Avg. contig coverage: 1 Consensus contains: A: 67 C: 59 G: 52 T: 65 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 243 Reads contain 243 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1308 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 90 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1308 Contig length: 529 Avg. contig coverage: 1 Consensus contains: A: 112 C: 138 G: 107 T: 172 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 529 Reads contain 529 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1309 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 89 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1309 Contig length: 271 Avg. contig coverage: 1 Consensus contains: A: 73 C: 49 G: 80 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 271 Reads contain 271 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1310 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 88 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1310 Contig length: 174 Avg. contig coverage: 1 Consensus contains: A: 43 C: 38 G: 56 T: 37 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 174 Reads contain 174 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1311 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 87 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1311 Contig length: 87 Avg. contig coverage: 1 Consensus contains: A: 19 C: 24 G: 18 T: 26 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 87 Reads contain 87 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1312 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 86 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1312 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 125 C: 77 G: 49 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1313 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 85 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1313 Contig length: 351 Avg. contig coverage: 1 Consensus contains: A: 101 C: 68 G: 94 T: 88 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 351 Reads contain 351 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1314 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 84 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1314 Contig length: 417 Avg. contig coverage: 1 Consensus contains: A: 144 C: 93 G: 80 T: 100 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 417 Reads contain 417 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1315 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 83 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1315 Contig length: 128 Avg. contig coverage: 1 Consensus contains: A: 40 C: 25 G: 39 T: 24 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 128 Reads contain 128 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1316 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 82 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1316 Contig length: 223 Avg. contig coverage: 1 Consensus contains: A: 72 C: 46 G: 61 T: 44 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 223 Reads contain 223 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1317 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 81 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1317 Contig length: 357 Avg. contig coverage: 1 Consensus contains: A: 82 C: 64 G: 98 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 357 Reads contain 357 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1318 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 80 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1318 Contig length: 240 Avg. contig coverage: 1 Consensus contains: A: 52 C: 54 G: 61 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 240 Reads contain 240 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1319 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 79 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1319 Contig length: 435 Avg. contig coverage: 1 Consensus contains: A: 132 C: 109 G: 82 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 435 Reads contain 435 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1320 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 78 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1320 Contig length: 296 Avg. contig coverage: 1 Consensus contains: A: 68 C: 46 G: 68 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 296 Reads contain 296 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1321 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 77 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1321 Contig length: 263 Avg. contig coverage: 1 Consensus contains: A: 72 C: 50 G: 60 T: 81 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 263 Reads contain 263 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1322 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 76 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1322 Contig length: 338 Avg. contig coverage: 1 Consensus contains: A: 76 C: 72 G: 88 T: 101 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 338 Reads contain 337 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1323 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 75 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1323 Contig length: 216 Avg. contig coverage: 1 Consensus contains: A: 50 C: 32 G: 44 T: 90 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 216 Reads contain 216 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1324 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 74 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1324 Contig length: 135 Avg. contig coverage: 1 Consensus contains: A: 34 C: 33 G: 38 T: 30 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 135 Reads contain 135 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1325 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 73 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1325 Contig length: 155 Avg. contig coverage: 1 Consensus contains: A: 33 C: 39 G: 28 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 155 Reads contain 155 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1326 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 72 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1326 Contig length: 220 Avg. contig coverage: 1 Consensus contains: A: 90 C: 50 G: 25 T: 55 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 220 Reads contain 220 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1327 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 71 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1327 Contig length: 345 Avg. contig coverage: 1 Consensus contains: A: 129 C: 75 G: 47 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 345 Reads contain 345 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1328 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 70 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1328 Contig length: 235 Avg. contig coverage: 1 Consensus contains: A: 63 C: 47 G: 58 T: 67 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 235 Reads contain 235 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1329 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 69 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1329 Contig length: 318 Avg. contig coverage: 1 Consensus contains: A: 117 C: 61 G: 71 T: 69 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 318 Reads contain 318 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1330 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 68 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1330 Contig length: 466 Avg. contig coverage: 1 Consensus contains: A: 151 C: 119 G: 81 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 466 Reads contain 466 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1331 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 67 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1331 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 112 C: 110 G: 96 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1332 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 66 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1332 Contig length: 306 Avg. contig coverage: 1 Consensus contains: A: 66 C: 45 G: 102 T: 92 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 306 Reads contain 305 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1333 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 65 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1333 Contig length: 540 Avg. contig coverage: 1 Consensus contains: A: 149 C: 129 G: 123 T: 139 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 540 Reads contain 540 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1334 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 64 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1334 Contig length: 185 Avg. contig coverage: 1 Consensus contains: A: 76 C: 27 G: 32 T: 50 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 185 Reads contain 185 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1335 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 63 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1335 Contig length: 329 Avg. contig coverage: 1 Consensus contains: A: 107 C: 67 G: 72 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 329 Reads contain 329 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1336 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 62 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1336 Contig length: 173 Avg. contig coverage: 1 Consensus contains: A: 65 C: 35 G: 44 T: 29 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 173 Reads contain 173 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1337 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 61 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1337 Contig length: 463 Avg. contig coverage: 1 Consensus contains: A: 139 C: 78 G: 134 T: 112 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 463 Reads contain 463 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1338 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 60 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1338 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 129 C: 79 G: 56 T: 108 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1339 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 59 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1339 Contig length: 431 Avg. contig coverage: 1 Consensus contains: A: 85 C: 102 G: 111 T: 133 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 431 Reads contain 431 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1340 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 58 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1340 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 136 C: 77 G: 76 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1341 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 57 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1341 Contig length: 543 Avg. contig coverage: 1 Consensus contains: A: 130 C: 136 G: 104 T: 172 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 543 Reads contain 542 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1342 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 56 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1342 Contig length: 418 Avg. contig coverage: 1 Consensus contains: A: 110 C: 141 G: 94 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 418 Reads contain 418 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1343 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 55 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1343 Contig length: 441 Avg. contig coverage: 1 Consensus contains: A: 95 C: 111 G: 113 T: 122 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 441 Reads contain 441 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1344 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 54 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1344 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 107 C: 81 G: 107 T: 161 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1345 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 53 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1345 Contig length: 355 Avg. contig coverage: 1 Consensus contains: A: 79 C: 69 G: 96 T: 111 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 355 Reads contain 355 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1346 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 52 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1346 Contig length: 404 Avg. contig coverage: 1 Consensus contains: A: 92 C: 60 G: 135 T: 117 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 404 Reads contain 404 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1347 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 51 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1347 Contig length: 339 Avg. contig coverage: 1 Consensus contains: A: 87 C: 80 G: 78 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 339 Reads contain 339 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1348 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 50 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1348 Contig length: 563 Avg. contig coverage: 1 Consensus contains: A: 139 C: 91 G: 175 T: 158 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 563 Reads contain 563 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1349 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 49 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1349 Contig length: 330 Avg. contig coverage: 1 Consensus contains: A: 84 C: 94 G: 70 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 330 Reads contain 330 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1350 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 48 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1350 Contig length: 205 Avg. contig coverage: 1 Consensus contains: A: 71 C: 50 G: 49 T: 35 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 205 Reads contain 205 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1351 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 47 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1351 Contig length: 374 Avg. contig coverage: 1 Consensus contains: A: 116 C: 107 G: 45 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 374 Reads contain 374 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1352 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 46 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1352 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 120 C: 63 G: 93 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1353 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 45 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1353 Contig length: 312 Avg. contig coverage: 1 Consensus contains: A: 104 C: 71 G: 54 T: 83 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 312 Reads contain 312 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1354 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 44 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1354 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 87 C: 85 G: 62 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1355 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 43 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1355 Contig length: 332 Avg. contig coverage: 1 Consensus contains: A: 87 C: 78 G: 78 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 332 Reads contain 332 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1356 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 42 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1356 Contig length: 327 Avg. contig coverage: 1 Consensus contains: A: 78 C: 92 G: 78 T: 79 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 327 Reads contain 327 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1357 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 41 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1357 Contig length: 367 Avg. contig coverage: 1 Consensus contains: A: 111 C: 65 G: 114 T: 77 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 367 Reads contain 367 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1358 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 40 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1358 Contig length: 299 Avg. contig coverage: 1 Consensus contains: A: 76 C: 69 G: 81 T: 73 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 299 Reads contain 299 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1359 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 39 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1359 Contig length: 440 Avg. contig coverage: 1 Consensus contains: A: 101 C: 109 G: 96 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 440 Reads contain 440 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1360 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 38 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1360 Contig length: 375 Avg. contig coverage: 1 Consensus contains: A: 90 C: 111 G: 76 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 375 Reads contain 375 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1361 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 37 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1361 Contig length: 354 Avg. contig coverage: 1 Consensus contains: A: 120 C: 60 G: 70 T: 104 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 354 Reads contain 354 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1362 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 36 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1362 Contig length: 255 Avg. contig coverage: 1 Consensus contains: A: 59 C: 41 G: 49 T: 106 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 255 Reads contain 255 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1363 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 35 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1363 Contig length: 456 Avg. contig coverage: 1 Consensus contains: A: 138 C: 121 G: 82 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 456 Reads contain 456 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1364 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 34 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1364 Contig length: 386 Avg. contig coverage: 1 Consensus contains: A: 105 C: 74 G: 92 T: 115 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 386 Reads contain 386 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1365 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 33 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1365 Contig length: 473 Avg. contig coverage: 1 Consensus contains: A: 157 C: 124 G: 76 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 473 Reads contain 473 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1366 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 32 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1366 Contig length: 394 Avg. contig coverage: 1 Consensus contains: A: 138 C: 54 G: 88 T: 114 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 394 Reads contain 394 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1367 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 31 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1367 Contig length: 468 Avg. contig coverage: 1 Consensus contains: A: 105 C: 141 G: 88 T: 134 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 468 Reads contain 468 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1368 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 30 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1368 Contig length: 518 Avg. contig coverage: 1 Consensus contains: A: 158 C: 101 G: 112 T: 147 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 518 Reads contain 518 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1369 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 29 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1369 Contig length: 423 Avg. contig coverage: 1 Consensus contains: A: 109 C: 75 G: 107 T: 132 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 423 Reads contain 423 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1370 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 28 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1370 Contig length: 453 Avg. contig coverage: 1 Consensus contains: A: 139 C: 93 G: 126 T: 95 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 453 Reads contain 453 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1371 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 27 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1371 Contig length: 602 Avg. contig coverage: 1 Consensus contains: A: 162 C: 153 G: 164 T: 123 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 602 Reads contain 602 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1372 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 26 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1372 Contig length: 360 Avg. contig coverage: 1 Consensus contains: A: 111 C: 72 G: 99 T: 78 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 360 Reads contain 360 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1373 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 25 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1373 Contig length: 319 Avg. contig coverage: 1 Consensus contains: A: 100 C: 62 G: 73 T: 84 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 319 Reads contain 319 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1374 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 24 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1374 Contig length: 551 Avg. contig coverage: 1 Consensus contains: A: 133 C: 107 G: 175 T: 136 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 551 Reads contain 551 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1375 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 23 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1375 Contig length: 491 Avg. contig coverage: 1 Consensus contains: A: 124 C: 137 G: 117 T: 113 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 491 Reads contain 491 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1376 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 22 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1376 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 123 C: 58 G: 84 T: 139 N: 1 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 404 bases, 1 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1377 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 21 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1377 Contig length: 321 Avg. contig coverage: 1 Consensus contains: A: 66 C: 77 G: 84 T: 94 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 321 Reads contain 321 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1378 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 20 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1378 Contig length: 454 Avg. contig coverage: 1 Consensus contains: A: 126 C: 129 G: 81 T: 118 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 454 Reads contain 454 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1379 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 19 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1379 Contig length: 316 Avg. contig coverage: 1 Consensus contains: A: 103 C: 88 G: 43 T: 82 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 316 Reads contain 316 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1380 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 18 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1380 Contig length: 356 Avg. contig coverage: 1 Consensus contains: A: 125 C: 71 G: 73 T: 87 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 356 Reads contain 356 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1381 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 17 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1381 Contig length: 521 Avg. contig coverage: 1 Consensus contains: A: 183 C: 98 G: 144 T: 96 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 521 Reads contain 521 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1382 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 16 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1382 Contig length: 262 Avg. contig coverage: 1 Consensus contains: A: 82 C: 41 G: 54 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 262 Reads contain 262 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1383 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 15 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1383 Contig length: 195 Avg. contig coverage: 1 Consensus contains: A: 46 C: 43 G: 59 T: 47 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 195 Reads contain 195 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1384 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 14 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1384 Contig length: 429 Avg. contig coverage: 1 Consensus contains: A: 165 C: 113 G: 54 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 429 Reads contain 429 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1385 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 13 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1385 Contig length: 376 Avg. contig coverage: 1 Consensus contains: A: 104 C: 106 G: 69 T: 97 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 376 Reads contain 376 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1386 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 12 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1386 Contig length: 534 Avg. contig coverage: 1 Consensus contains: A: 125 C: 137 G: 156 T: 116 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 534 Reads contain 534 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1387 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 11 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1387 Contig length: 574 Avg. contig coverage: 1 Consensus contains: A: 192 C: 135 G: 118 T: 129 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 574 Reads contain 574 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1388 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 10 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1388 Contig length: 517 Avg. contig coverage: 1 Consensus contains: A: 146 C: 119 G: 122 T: 130 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 517 Reads contain 517 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1389 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 9 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1389 Contig length: 322 Avg. contig coverage: 1 Consensus contains: A: 93 C: 71 G: 69 T: 89 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 322 Reads contain 322 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1390 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 8 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1390 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 89 C: 88 G: 97 T: 98 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1391 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 7 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1391 Contig length: 557 Avg. contig coverage: 1 Consensus contains: A: 143 C: 136 G: 119 T: 159 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 557 Reads contain 557 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1392 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 6 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1392 Contig length: 413 Avg. contig coverage: 1 Consensus contains: A: 93 C: 111 G: 90 T: 119 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 413 Reads contain 413 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1393 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 5 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1393 Contig length: 580 Avg. contig coverage: 1 Consensus contains: A: 151 C: 125 G: 162 T: 142 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 580 Reads contain 580 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1394 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 4 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1394 Contig length: 405 Avg. contig coverage: 1 Consensus contains: A: 131 C: 88 G: 93 T: 93 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 405 Reads contain 405 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1395 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 3 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1395 Contig length: 477 Avg. contig coverage: 1 Consensus contains: A: 126 C: 144 G: 87 T: 120 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 477 Reads contain 477 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1396 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 2 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1396 Contig length: 323 Avg. contig coverage: 1 Consensus contains: A: 90 C: 72 G: 89 T: 72 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 323 Reads contain 323 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Building new contig 1397 Localtime: Thu Jul 15 12:00:00 2010 Unused reads: 1 + RL1 That's it for this contig. Finished building the contig. Localtime: Thu Jul 15 12:00:00 2010 -------------- Contig statistics ---------------- Contig id: 1397 Contig length: 372 Avg. contig coverage: 1 Consensus contains: A: 109 C: 56 G: 122 T: 85 N: 0 IUPAC: 0 Funny: 0 *: 0 Num reads: 1 Avg. read length: 372 Reads contain 372 bases, 0 Ns and 0 gaps. ------------------------------------------------- Localtime: Thu Jul 15 12:00:00 2010 Saving of extra temporary singlets disabled. Marking possibly misassembled repeats ...done. Found none. Transfering reads to readpool. Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: step3_log/step3_info_contigstats_pass.1.txt Saving read tag list to file: step3_log/step3_info_readtaglist.1.txt Saving contig tag list to file: step3_log/step3_info_consensustaglist.1.txt Saving project contig<->read list to file: step3_log/step3_info_contigreadlist_pass.1.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project statistics to file: step3_info/step3_info_contigstats.txt Localtime: Thu Jul 15 12:00:00 2010 Saving read tag list to file: step3_info/step3_info_readtaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contig tag list to file: step3_info/step3_info_consensustaglist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving project contig<->read list to file: step3_info/step3_info_contigreadlist.txt Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to file: step3_results/step3_out.caf Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to directory: step3_results/step3_out.gap4da (first deleting old directory) (now creating new directory) (saving contigs) Done. Localtime: Thu Jul 15 12:00:00 2010 Saving contigs to FASTA file: step3_results/step3_out.unpadded.fasta Saving padded contigs to FASTA file: step3_results/step3_out.padded.fasta Saving contig qualities to FASTA quality file: step3_results/step3_out.unpadded.fasta.qual Saving padded contig qualities to FASTA quality file: step3_results/step3_out.padded.fasta.qual Saving padded strain contigs to FASTA file: step3_results/step3_out.padded_.fasta (qualities have .qual appended) Localtime: Thu Jul 15 12:00:00 2010 Saving SNP analysis to file: step3_info/step3_info_snpanalysis.txt End of assembly process, thank you for using miraEST.

Go to the output files for this example

Command line arguments

MIRAest fragment assembly program
Version: EMBOSS:6.3.0

   Standard (Mandatory) qualifiers:
   -project            string     [mira] Default is mira. Defines the project
                                  name for this assembly. The project name
                                  automatically influences the name of input
                                  and output files / directories. E.g. in the
                                  default setting, the file names for the
                                  output of the assembly in FASTA format would
                                  be mira_out.fasta and mira_out.fasta.qual.
                                  Setting the project name to 'MyProject'
                                  would generate MyProject_out.fasta and
                                  MyProject_out.fasta.qual. (Any string)

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers:
   -paramsfile         infile     Loads parameters from the filename given.
                                  Allows a maximum of 10 levels of recursion,
                                  i.e. a -params option appearing within a
                                  file that loads other parameter files
   -setparam           menu       [unspecified] Sets parameters suited for
                                  loading sequences from FASTA, PHD or CAF
                                  files. The default is not to specify the
                                  type of input file. (Values: unspecified
                                  (Unspecified); fasta (Fasta); phd (PHD); caf
                                  (CAF))
   -expdir             directory  [.] Defines the directory where mira should
                                  search for experiment files (EXP).
   -scfdir             directory  [.] Defines the directory where mira should
                                  search for SCF files
   -feifile            infile     [mira_in.fofn] Defines the file of filenames
                                  where the names of the EXP files of a
                                  project are located.
   -fpifile            infile     [mira_in.fofn] Defines the file of filenames
                                  where the names of the PHD files of a
                                  project are located.
   -pifile             infile     [mira_in.phd] Defines the PHD file to load
                                  sequences of a project from.
   -faifile            infile     [mira_in.fasta] Defines the FASTA file to
                                  load sequences of a project from.
   -fqifile            infile     [mira_in.fasta.qual] Defines the fasta file
                                  to load base qualities of a project from.
                                  Although the order of reads in the quality
                                  file does not need to be the same as in the
                                  fasta or fofn projects (although it saves a
                                  bit of time if they are).
   -cifile             infile     [mira_in.caf] Defines the file to load a CAF
                                  project from. Filename must end with
                                  '.caf'.
   -sdifile            infile     [mira_straindata_in.txt] Defines the file to
                                  load straindata from. Only used in EST
                                  projects (miraEST).
   -xtiifile           infile     [mira_xmltraceinfo_in.xml] Defines the file
                                  to load a trace info file in XML format
                                  from. This can be used both when merging XML
                                  data to loaded files or when loading a
                                  project from an XML trace info file.
   -genome             menu       [normal] Quality grades of de-novo genome
                                  assembly. Draft is quick-and-dirty, suited
                                  to get a first look on approximate coverage
                                  of a running project. Should not be used for
                                  anything else. Normal is the default
                                  parameter set of mira that is able to tackle
                                  most genomes. A bit slower than the draft
                                  version, but includes such options as read
                                  extension and vector remnant clipping.
                                  Accurate is still slower than the normal
                                  mode but should be used for genomes that
                                  pose a problem to the normal mode. (Values:
                                  draft (Draft); normal (Normal); accurate
                                  (Accurate))
   -mapping            menu       [normal] Work like the -genome switches
                                  except they are to be used when performing
                                  mapping assemblies against given backbone
                                  sequences. (Values: draft (Draft); normal
                                  (Normal); accurate (Accurate))
   -clipping           menu       [medium] Three clipping grade modifiers,
                                  from light clipping when working with well
                                  preprocessed sequences to heavy clipping
                                  when the sequences that are being assembled
                                  had only sloppy or no preprocessing. Note 1
                                  - the light version is already included in
                                  the -genome and -mapping switches. Note 2 -
                                  it is recommended that you perform a
                                  thorough preprocessing (clipping sequencing
                                  vector stretches, clipping of low quality
                                  bases, tagging standard repeats etc.) before
                                  assembling sequences. The clipping routines
                                  of mira are more optimised to cope with the
                                  last remnants of wrongly preprocessed
                                  sequences than with sequences having had no
                                  pre-processing at all. (Values: light
                                  (Light); medium (Medium); heavy (Heavy))
   -highlyrepetitive   boolean    [N] A modifier switch for genome data that
                                  is deemed to be highly repetitive. The
                                  assemblies will run slower due to more
                                  iterative cycles that give mira a chance to
                                  resolve nasty repeats.
   -highqualitydata    boolean    [N] A modifier switch when the sequences
                                  that are used are of exceptional quality.
                                  mira will then bump up a few quality
                                  parameters which should lead to less false
                                  positives in the repeat and SNP detection
                                  routines.
   -estmode            boolean    [N] Switches mira to a good initial preset
                                  for assembling EST data. Note that this is
                                  not needed (and even counterproductive) when
                                  used with miraEST.
   -horrid             boolean    [N] Sets a number of parameters useful when
                                  dealing with really horrid data sets. Useful
                                  means that parameters are chosen to so that
                                  time and memory consumption do not explode
                                  beyond all hope of the program returning.
                                  Note that MIRA will return in most cases
                                  useful assemblies with this switch, but
                                  these might not be as optimised as with
                                  normal operation. The definition of 'horrid'
                                  is a bit flexible, for example, (a) a
                                  genomic projects with more than 2.000 reads
                                  that all seem to align partly to each other
                                  but have different repetitive structures or
                                  (b) EST clusters with a few thousand almost
                                  similar reads.
   -borg               boolean    [N] Sets several parameters to have mira try
                                  to assemble as many reads as possible. Will
                                  probably slow down the assembly process and
                                  use more memory. 'We are MIRA of borg. You
                                  will be assembled, resistance is futile!'
   -lj                 menu       [fofnexp] Defines whether to load and
                                  assemble EXP files from a file of filenames
                                  ('mira_in.fofn'), load and assemble FASTA
                                  sequences ('mira_in.fasta') and their
                                  qualities ('mira_in.fasta.qual'), load and
                                  assemble sequences or qualities from a phd
                                  file ('mira_in.phd') or to load a project
                                  from a CAF file ('mira_in.caf') and assemble
                                  or eventually reassemble it. N.B. fofnphd
                                  is not currently available. (Values: fofnexp
                                  (EXP files from a file of filenames); fasta
                                  (Load and assemble FASTA); caf (Load and
                                  assemble CAF); phd (Load and assemble PHD);
                                  fofnphd (PHD files from a file of
                                  filenames))
   -fo                 boolean    [N] If set to 'Y', the project will not be
                                  assembled and no assembly output files will
                                  be produced. Instead, the project files will
                                  only be loaded. This switch is useful for
                                  checking consistency of input files.
   -mxti               boolean    [N] Some file formats above (FASTA, PHD or
                                  even CAF and EXP) possibly don't contain all
                                  the info necessary or useful for each read
                                  of an assembly. Should additional
                                  information, such as like clipping positions
                                  etc., be available in a XML trace info file
                                  in NCBI format (see File formats), then set
                                  this option to 'Y' and it will be merged to
                                  the data loaded. Please note, quality
                                  clippings given here will override quality
                                  clippings loaded earlier or performed by
                                  mira. Minimum clippings will still be made
                                  by the program, though.
   -rns                menu       [sanger] Defines the centre naming scheme
                                  for read suffixes. Currently, only Sanger
                                  Institute and TIGR naming schemes are
                                  supported out of the box. How to choose?
                                  Please read the documentation available at
                                  the different centres or ask your sequence
                                  provider. In a nutshell, the Sanger scheme
                                  is
                                  'somename.[pqsfrw][12][bckdeflmnpt][a|b|c|...'
                                  (e.g. U13a08f10.p1ca), TIGR scheme is
                                  'somenameTF*|TR*|TA*' (e.g. GCPBN02TF or
                                  GCPDL68TABRPT103A58B). (Values: sanger
                                  (Sanger); tigr (TIGR))
   -eq                 menu       [SCF] Defines the source format for reading
                                  qualities from external sources. Normally
                                  takes effect only when these are not present
                                  in the format of the load_job project (EXP
                                  and FASTA can have them, CAF and PHD must
                                  have them). (Values: none (None); SCF (SCF))
   -eqo                boolean    [N] Only takes effect when 'lj' is fofnexp.
                                  Defines whether or not the qualities from
                                  the external source override the possibly
                                  loaded qualities from the load job project.
                                  This might be of use in case some
                                  post-processing software fiddles around with
                                  the quality values of the input file but
                                  one wants to have the original ones.
   -[no]droeqe         boolean    [Y] Should there be a major mismatch between
                                  the external quality source and the
                                  sequence (e.g. the base sequence read from a
                                  SCF file does not match the originally read
                                  base sequence), should the read be excluded
                                  from assembly or not. If not, it will use
                                  the qualities it had before trying to load
                                  the external qualities (either default
                                  qualities or the ones loaded from the
                                  original source).
   -[no]uti            boolean    [Y] Two reads sequenced from the same clone
                                  template form a read pair with a known
                                  minimum and maximum distance. This feature
                                  will definitively help for contigs
                                  containing lots of repeats. Set this to 'Y'
                                  if your data contains information on insert
                                  sizes. Information on insert sizes can be
                                  given via the SI tag in EXP files (for each
                                  read pair individually), or for the whole
                                  project using dismin and dismax
   -ess                integer    [1] Controls the starting step of the EST
                                  assembly and is therefore only useful in
                                  miraEST. EST assembly is a three step
                                  process, each with different settings to the
                                  assembly engine, with the result of each
                                  step being saved to disk. If results of
                                  previous steps are present in a directory,
                                  one can easily 'play around' with different
                                  setting for subsequent steps by reusing the
                                  results of the previous steps and directly
                                  starting with step two or three. (Integer
                                  from 1 to 4)
   -[no]ps             boolean    [Y] Controls whether date and time are
                                  printed out during the assembly. Suppressing
                                  it isn't useful in normal operation, only
                                  when debugging or benchmarking.
   -lsd                boolean    [N] Straindata is a key value file, one read
                                  per line. First the name of the read, then
                                  the strain name of the organism the read
                                  comes from. It is used by the program to
                                  differentiate different types of SNPs
                                  appearing in organisms and classifying them.
   -lb                 boolean    [N] A backbone is a sequence (or a previous
                                  assembly) that is used as a template for the
                                  current assembly. The current assembly
                                  process will first assemble reads to loaded
                                  backbone contigs before creating new
                                  contigs. This feature is helpful for
                                  assembling against previous (and already
                                  possibly edited) assembly iterations, or to
                                  make a comparative assembly of two very
                                  closely related organisms. Please read 'very
                                  closely related' as in 'only SNP mutations
                                  or short indels present'.
   -sbuip              integer    [3] When assembling against backbones, this
                                  parameter defines the pass iteration (see
                                  nop) from which on the backbones will be
                                  really used. In the passes preceding this
                                  number, the non-backbone reads will be
                                  assembled together as if no backbones
                                  existed. This allows mira to correctly spot
                                  repetitive stretches that differ by single
                                  bases and tag them accordingly. Rule of
                                  thumb - if backbones belong to the same
                                  strain as the reads to assemble, set to 1.
                                  If backbones are a different strain, then
                                  set sbuib to 1 lower than nop (example - nop
                                  4 and sbuip 3). (Integer 1 or more)
   -bsn                string     Defines the name of the strain that the
                                  backbone sequences have. (Any string)
   -bft                menu       [fasta] Defines the filetype of the backbone
                                  file given. Currently (2.8.1 ) only FASTA,
                                  CAF and GBF files are supported. When GBF
                                  (GenBank files, also named .gbk) files are
                                  loaded, the features within these files are
                                  automatically transformed into
                                  Staden-compatible tags and get passed
                                  through the assembly. (Values: fasta
                                  (Fasta); caf (CAF); gbf (GenBank))
   -brl                integer    [2500] Parameter for the internal sectioning
                                  size of the backbone. Extremely repetitive
                                  sequences may require reducing the default
                                  value, but the default value should work
                                  well in 99.9% of all cases. (Integer from
                                  1000 to 3000)
   -bbq                integer    [-1] Defines the default quality that the
                                  backbone sequences have if they came without
                                  quality values in their files (like in GBF
                                  format or when FASTA is used without .qual
                                  files). A value of -1 causes mira to use the
                                  same default quality for backbones as for
                                  reads. (Integer from -1 to 100)
   -[no]abnc           boolean    [Y] The standard mode of the assembler is to
                                  assemble available reads to a backbone and
                                  make new contigs with the remaining reads.
                                  If this option is set to 'N', the reads that
                                  cannot be assembled into existing contigs
                                  are put as singlets into the assembly, not
                                  forming new contigs.
   -mrl                integer    [40] Minimum length that reads must have to
                                  be considered for the assembly. Shorter
                                  sequences will be filtered out at the
                                  beginning of the process and won't be
                                  present in the final project. (Integer 20 or
                                  more)
   -nop                integer    [3] Defines how many iterations of the whole
                                  assembly process are done. Rule of thumb -
                                  for quick and dirty assembly use 1 (not
                                  recommended). For assembly using read
                                  extensions and / or automatic contig editing
                                  (-ure and -ace) use at least 2. The
                                  recommended setting is 3 or higher, as some
                                  knowledge generated by the assembler can be
                                  used only from the third iteration on. More
                                  than 3 passes might be useful for projects
                                  containing many repetitive elements. See
                                  also -rbl and -mr for parameters that affect
                                  the assembly and disentanglement of
                                  possible repeats. (Integer 1 or more)
   -[no]sep            boolean    [Y] Defines whether the skim algorithm (and
                                  with it also the recalculation of
                                  Smith-Waterman alignments) is called in
                                  between each main pass. If set to 'N',
                                  skimming is done only when needed by the
                                  workflow, either when read extensions are
                                  searched for (-ure) or when possible vector
                                  leftovers are to be clipped (-pvc). Setting
                                  this option to 'Y' is highly recommended,
                                  setting it to 'N' is only for quick and
                                  dirty assemblies.
   -rbl                integer    [2] Defines the maximum number of times a
                                  contig can be rebuilt during main assembly
                                  passes (-nop) if misassemblies, due to
                                  possible repeats, are found. (Integer 1 or
                                  more)
   -sd                 boolean    [N] Default is 'Y' for mira and 'N' for
                                  miraEST. A spoiler can be either a chimeric
                                  read or it is a read with long parts of
                                  unclipped vector sequence still included
                                  (that was too long for the -pvc vector
                                  leftover clipping routines). A spoiler
                                  typically prevents contigs being joined;
                                  MIRA will cut them back so that they present
                                  no more harm to the assembly. Recommended
                                  for assemblies of mid-to-high coverage
                                  genomic assemblies; not recommended for
                                  assemblies of ESTs as one might lose splice
                                  variants with that. A minimum number of two
                                  assembly passes (-nop) must be run for this
                                  option to take effect.
   -[no]sdlpo          boolean    [Y] Defines whether the spoiler detection
                                  algorithms are run only for the last pass or
                                  for all passes (-nop). Takes effect only if
                                  spoiler detection (-sd) is on.
   -bdq                integer    [10] Defines the default base quality of
                                  reads that have no quality read from a file.
                                  (Integer 0 or more)
   -[no]ugpf           boolean    [Y] MIRA has two different pathfinder
                                  algorithms it chooses from to find its way
                                  through the (more or less) complete set of
                                  possible sequence overlaps; a genomic and an
                                  EST pathfinder. The genomic looks a bit
                                  into the future of the assembly and tries to
                                  stay on safe grounds using a maximum of
                                  information already present in the contig
                                  that is being built. The EST version, on the
                                  contrary, will directly jump at the complex
                                  cases posed by very similar repetitive
                                  sequences and try to solve those first; it
                                  is willing to fall down to brute force when
                                  really bad cases (such as coverage with
                                  thousands of sequences) are encountered.
                                  Generally, the genomic pathfinder will also
                                  work quite well with EST sequences (but
                                  might get slowed down a lot in pathological
                                  cases), while the EST algorithm does not
                                  work so well on genomes. If in doubt,
                                  leaveas 'Y' for genome projects and set to
                                  'N' for EST projects.
   -[no]uess           boolean    [Y] Another important switch if you plan to
                                  assemble non-normalised EST libraries, where
                                  some ESTs may reach coverages of several
                                  hundreds or thousands of reads. This switch
                                  lets MIRA save a lot of computational time
                                  when aligning those extremely high coverage
                                  areas (but only there), at the expense of
                                  some accuracy.
   -esspd              integer    [500] Defines the number of potential
                                  partners a read must have for MIRA switching
                                  into emergency search stop mode for that
                                  read. (Integer 1 or more)
   -umcbt              boolean    [N] Defines whether there is an upper limit
                                  of time to be used to build one contig. Set
                                  this to 'Y' in EST assemblies where you
                                  think that extremely high coverages occur.
                                  Less useful for assembly of genomic
                                  sequences.
   -bts                integer    [10000] Depending on -umcbt above, this
                                  number defines the time in seconds alloted
                                  to building one contig. (Integer 1 or more)
   -[no]ure            boolean    [Y] Defines whether there is an upper limit
                                  of time to be used to build one contig. Set
                                  this to 'Y' in EST assemblies where you
                                  think that extremely high coverages occur.
                                  Less useful for assembly of genomic
                                  sequences.
   -rewl               integer    [30] Only takes effect when -ure is set to
                                  'Y'. The read extension routines use a
                                  sliding window approach on Smith-Waterman
                                  alignments. This parameter defines the
                                  window length. (Integer 1 or more)
   -rewme              integer    [2] Only takes effect when -ure is set to
                                  'Y'. The read extension routines use a
                                  sliding window approach on Smith-Waterman
                                  alignments. This parameter defines the
                                  number maximum number of errors
                                  (disagreements) between two alignments in
                                  the given window. (Integer 1 or more)
   -feip               integer    [0] Only takes effect when -ure is set to
                                  'Y'. The read extension routines can be
                                  called before assembly and/or after each
                                  assembly pass (see -nop). This parameter
                                  defines the first pass in which the read
                                  extension routines are called. The default
                                  of 0 tells mira to extend the reads the
                                  first time before the first assembly pass.
                                  (Integer 0 or more)
   -leip               integer    [0] Only takes effect when -ure is set to
                                  'Y'. The read extension routines can be
                                  called before assembly and/or after each
                                  assembly pass (see -nop). This parameter
                                  defines the last pass in which the read
                                  extension routines are called. The default
                                  of 0 tells mira to extend the reads the last
                                  time before the first assembly pass.
                                  (Integer 0 or more)
   -tpae               boolean    [N] This option is useful in EST assembly.
                                  Poly-AT stretches at the end of reads that
                                  were not correctly masked or clipped in
                                  pre-processing steps from external programs
                                  get tagged here. The assembler will not use
                                  these stretches for critical operations.
                                  Additionally, the tags do provide a good
                                  visual anchor when looking at the assembly
                                  with different programs.
   -pbwl               integer    [7] Only takes effect when -tpae is set to
                                  'Y'. Defines the window length within which
                                  all bases (except the maximum number of
                                  errors allowed) must be either A or T to be
                                  considered a polybase stretch. (Integer 1 or
                                  more)
   -pbwme              integer    [2] Only takes effect when -tpae is set to
                                  'Y. Defines the maximum number of errors
                                  allowed in a given window length such that a
                                  stretch is considered to be a polybase
                                  stretch. The distribution of these errors is
                                  not important. (Integer 1 or more)
   -pbwgd              integer    [9] Only takes effect when -tpae is set to
                                  'Y'. Defines the number of bases from the
                                  end of a sequence (if masked, from the end
                                  of the masked area) within which a polybase
                                  stretch is looked for without finding one.
                                  (Integer 1 or more)
   -[no]pvc            boolean    [Y] Mira will try to identify possible
                                  sequencing vector relicts present at the
                                  start of a sequence and clip them away.
                                  These relicts are usually a few bases long
                                  and were not correctly removed from the
                                  sequence in data pre-processing steps of
                                  external programs. You might want to turn
                                  off this option if you know (or think) that
                                  your data contains a lot of repeats and the
                                  option below to fine tune the clipping
                                  behaviour does not give the expected
                                  results.
   -pvcmla             integer    [18] The clipping of possible vector relicts
                                  option works quite well. Unfortunately the
                                  bounds of repeats or differences in EST
                                  splice variants sometimes show the same
                                  alignment behaviour as possible sequencing
                                  vector relicts and could therefore also be
                                  clipped. To stop the vector clipping from
                                  mistakenly clipping repetitive regions or
                                  EST splice variants, this option puts an
                                  upper bound to the number of bases a
                                  potential clip is allowed to have. If the
                                  number of bases is below or equal to this
                                  threshold then the bases are clipped. If the
                                  number of bases exceeds the threshold then
                                  the clip is NOT performed. Setting the value
                                  to 0 turns off the threshold i.e. clips are
                                  then always performed if a potential vector
                                  is found. (Integer 0 or more)
   -qc                 boolean    [N] Default is 'N', but is automatically set
                                  to 'Y' when using the setparam options
                                  'fasta' or 'phd' (can be turned off again by
                                  subsequent options afterwards). This will
                                  let mira perform its own quality clipping
                                  before sequences are entered into the
                                  assembly. The clip function performed is a
                                  sequence end window quality clip with back
                                  iteration to get a maximum number of bases
                                  as useful sequence. Note that the bases
                                  clipped away here can still be used
                                  afterwards if there is enough evidence
                                  supporting their correctness when the option
                                  -ure is turned on.
   -qcmq               integer    [20] This is the minimum quality required of
                                  bases in a window in order to be accepted.
                                  Please be cautious and don't use extreme
                                  values here, because then the clipping will
                                  be too lax or too harsh. Values below 15 and
                                  higher than 35 are disallowed. (Integer
                                  from 15 to 35)
   -qcwl               integer    [30] This is the length of a window in bases
                                  for the quality clip. (Integer 10 or more)
   -[no]mbc            boolean    [Y] This will let mira perform a 'clipping'
                                  of bases that were masked out (replaced with
                                  the character X). It is generally not a
                                  good idea to use mask bases to remove
                                  unwanted portions of a sequence; the EXP
                                  file format and the NCBI traceinfo format
                                  have excellent possibilities to circumvent
                                  this. But because a lot of pre-processing
                                  software is built around cross_match,
                                  scylla- and phrap-style base masking, the
                                  need arised for mira to be able to handle
                                  this too. mira will look at the start and
                                  end of each sequence to see whether there
                                  are masked bases that should be 'clipped'.
   -mbcgs              integer    [20] While performing the clip of masked
                                  bases, mira will look if it can merge larger
                                  chunks of masked bases that are a maximum
                                  of -mbcgs apart. (Integer 0 or more)
   -mbcmfg             integer    [40] While performing the clip of masked
                                  bases at the start of a sequence, mira will
                                  allow up to this number of unmasked bases in
                                  front of a masked stretch. (Integer 0 or
                                  more)
   -mbcmeg             integer    [60] While performing the clip of masked
                                  bases at the end of a sequence, mira will
                                  allow up to this number of unmasked bases
                                  behind a masked stretch. (Integer 0 or more)
   -[no]emlc           boolean    [Y] If on, ensures a minimum left clip on
                                  each read according to the parameters in
                                  -mlcr & -smlc
   -mlcr               integer    [25] If -emlc is 'Y', checks whether there
                                  is a left clip whose length is at least the
                                  size specified here. (Integer 0 or more)
   -smlc               integer    [30] If -emlc is 'Y' and the actual left
                                  clip is < -mlcr, then set the left clip of
                                  read to the value given here. (Integer 0 or
                                  more)
   -bph                integer    [14] Default is 14 on 32 bit systems and 16
                                  on 64 bit systems. Controls the number of
                                  consecutive bases n which are used as a word
                                  hash. The higher the value the faster the
                                  search. The lower the value the more weak
                                  matches are found. Values below 10 are not
                                  recommended. (Integer 1 or more)
   -hss                integer    [4] This is a parameter controlling the
                                  stepping increments with which hashes are
                                  generated. This allows for a more
                                  fine-grained search as matches are now found
                                  with at least n+s (see -bph) equal bases
                                  instead of the SSAHA 2n. The higher the
                                  value the faster the search. The lower the
                                  value the more weak matches are found.
                                  (Integer 1 or more)
   -pr                 integer    [50] Controls the relative percentage of
                                  exact word matches in an approximate overlap
                                  that has to be reached to accept the
                                  overlap as a possible match. Increasing this
                                  number will decrease the number of possible
                                  alignments that have to be checked by
                                  Smith-Waterman later on in the assembly, but
                                  it might also lead to the rejection of
                                  weaker overlaps (i.e. overlaps that contain
                                  a higher number of mismatches). (Integer 1
                                  or more)
   -mhpr               integer    [200] Controls the maximum number of
                                  possible hits one read can maximally
                                  transport to the Smith-Waterman alignment
                                  phase. If more potential hits are found,
                                  only the best ones are taken. This is an
                                  important option for tackling projects that
                                  contain extreme assembly conditions. For
                                  example, 5000 reads that are all very
                                  similar would generate around 40 to 50
                                  million possible alignments (forward and
                                  reverse complement). Setting this parameter
                                  to 200 reduces the number of alignments to
                                  check to around 1.5-2 million. As the
                                  assembly increases in passes (-nop),
                                  different combinations of possible hits will
                                  be checked, always the probably best ones
                                  first. So the accuracy of the assembly
                                  should only suffer when lowering this number
                                  too much. (Integer 1 or more)
   -bip                integer    [15] The banded Smith-Waterman alignment
                                  uses this percentage number to compute the
                                  bandwidth it has to use when computing the
                                  alignment matrix. E.g. expected overlap is
                                  150 bases, bip=10 -> the banded SW will
                                  compute a band of 15 bases to each side of
                                  the expected alignment diagonal, thus
                                  allowing up to 15 unbalanced inserts /
                                  deletes in the alignment. INCREASING AND
                                  DECREASING THIS NUMBER - increasing will
                                  find more non-optimal alignments but will
                                  also increase SW runtime between linear and
                                  ^2, decreasing will work the other way round
                                  (it might miss a few bad alignments but
                                  gain speed). (Integer from 1 to 100)
   -bmin               integer    [25] Minimum bandwidth in bases to each
                                  side. (Integer 1 or more)
   -bmax               integer    [50] Maximum bandwidth in bases to each
                                  side. (Integer 1 or more)
   -mo                 integer    [15] Minimum number of overlapping bases
                                  needed in an alignment of two sequences to
                                  be accepted. (Integer 1 or more)
   -ms                 integer    [15] Describes the minimum score of an
                                  overlap to be taken into account for
                                  assembly. mira uses a default scoring scheme
                                  for SW align. Each match counts 1, a match
                                  with an N counts 0, each mismatch with a
                                  non-N base -1 and each gap -2. Use a bigger
                                  score to weed out a number of chance
                                  matches, a lower score to perhaps find the
                                  single (short) alignment that might join two
                                  contigs together (at the expense of
                                  computing time and memory). (Integer 1 or
                                  more)
   -mrs                integer    [65] Describes the min percentage of
                                  matching between two reads to be considered
                                  for assembly. Increasing this number will
                                  save memory but one might lose possible
                                  alignments. A maximum of 80 is probably
                                  sensible here. Decreasing below 55 will
                                  probably make memory and time consumption
                                  explode. (Integer from 1 to 100)
   -egp                boolean    [N] Defines whether or not to increase
                                  penalties applied to alignments containing
                                  long gaps. Setting this to 'Y' might help in
                                  projects with frequent repeats. On the
                                  other hand, it is definitively disturbing
                                  when assembling very long reads containing
                                  multiple long indels in the called base
                                  sequence ... although this should not happen
                                  in the first place and is a sure sign for
                                  problems lying ahead. When in doubt, set it
                                  to 'Y' for EST projects and de-novo genome
                                  assembly, set it to 'N' for assembly of
                                  closely related strains (assembly against a
                                  backbone). When set to 'N', it is
                                  recommended to have -amgb and -amgbemc both
                                  set to 'Y'.
   -egpl               menu       [low] Has no effect if extra_gap_penalty is
                                  off. Defines an extra penalty applied to
                                  'long' gaps. There are these predefined
                                  levels - 1. low - use this if you expect
                                  your base caller frequently misses two or
                                  more bases. 2. medium - use this if your
                                  base caller is expected to frequently miss
                                  one to two bases. 3. high - use this if your
                                  base caller does not frequently miss more
                                  than one base. For some stages of the EST
                                  assembly process, a special value 'est' is
                                  used. (Values: low (Low); medium (Medium);
                                  high (High); est (EST split splices))
   -megpp              integer    [100] Has no effect if extra_gap_penalty is
                                  off. Defines the maximum extra penalty in
                                  percent applied to 'long' gaps. (Integer
                                  from 1 to 100)
   -np                 string     [mira] Contigs will have this string
                                  prepended to their names. (Any string)
   -an                 menu       [signal] When adding reads to a contig,
                                  dangerous regions can get an extra integrity
                                  check. none = no extra check. text = check
                                  is only text-based. signal = check is signal
                                  based, if the SCF trace is not available,
                                  fallback is 'text'. For the time being, only
                                  regions tagged as ALUS or REPT in the
                                  experiment file are considered dangerous.
                                  (Values: none (None); text (Text); signal
                                  (Signal))
   -rodirs             integer    [15] When adding reads to a contig, reject
                                  the reads if the drop in the quality of the
                                  consensus is > the given value in %. Lower
                                  values mean stricter checking. This value is
                                  doubled should a read be entered that has a
                                  template partner (a read pair) at the right
                                  distance. (Integer from 1 to 100)
   -dmer               integer    [1] When adding reads to a contig, reject
                                  the reads if the error in zones known as
                                  dangerous exceeds the given value in %.
                                  Lower values mean stricter checking in these
                                  danger zones. For the time being, only
                                  regions tagged as ALUS or REPT in the
                                  experiment file are considered dangerous.
                                  (Integer from 1 to 100)
   -[no]mr             boolean    [Y] One of the most important switches in
                                  MIRA. If set to 'Y', MIRA will try to
                                  resolve misassemblies due to repeats by
                                  identifying single base stretch differences
                                  and tag those critical bases as RMB (Repeat
                                  Marker Base, weak or strong). This switch is
                                  also needed when MIRA is run in EST mode to
                                  identify possible inter-, intra- and
                                  intra-and-interorganism SNPs.
   -asir               boolean    [N] Only takes effect when -mr is set to
                                  'Y', effect is also dependent on the fact
                                  whether strain data (see -lsd) is present or
                                  not. Usually, mira will mark bases that
                                  differentiate between repeats, when a
                                  conflict occurs between reads that belong to
                                  one strain. If the conflict occurs between
                                  reads belonging to different strains they
                                  are marked as SNP. However, if this switch
                                  is set to 'Y',= then conflicts within a
                                  strain are also marked as SNP. This switch
                                  is mainly used in assemblies of ESTs; it
                                  should not be set for genomic assembly.
   -mrpg               integer    [2] Only takes effect when -mr is set to
                                  'Y'. This defines the minimum number of
                                  reads in a group that are needed for the RMB
                                  (Repeat Marker Bases) or SNP detection
                                  routines to be triggered. A group is defined
                                  by the reads carrying the same nucleotide
                                  for a given position, i.e., an assembly with
                                  mrpg=2 will need at least two times two
                                  reads with the same nucleotide (having at
                                  least a quality as defined in -mgqrt) to be
                                  recognised as repeat marker or a SNP.
                                  Setting this to a low number increases
                                  sensitivity, but might produce a few false
                                  positives, resulting in reads being thrown
                                  out of contigs because of falsely identified
                                  possible repeat markers (or wrongly
                                  recognised as SNP). (Integer 2 or more)
   -mgqrt              integer    [30] Only takes effect when -mr is set to
                                  'Y'. This defines the minimum quality of a
                                  group of bases to be taken into account as
                                  potential repeat marker. The lower the
                                  number, the more sensitive you get, but
                                  lowering below 25 is not recommended as a
                                  lot of wrongly called bases can have a
                                  quality approaching this value and you'd end
                                  up with a lot of false positives. The
                                  higher the overall coverage of your project
                                  the better, and the higher you can set this
                                  number. A value of 35 will probably remove
                                  all false positives, a value of 40 will
                                  probably never show false positives.
                                  (Integer 25 or more)
   -emea               integer    [15] Only takes effect when -mr is set to
                                  'Y'. Using the end of sequences of Sanger
                                  type shotgun sequencing is always a bit
                                  risky, as wrongly called bases tend to crowd
                                  there or some sequencing vector relicts
                                  hang around. It is even more risky to use
                                  these stretches for detecting possible
                                  repeats, so one can define an exclusion area
                                  where the bases are not used when
                                  determining whether a mismatch is due to
                                  repeats or not. (Integer 0 or more)
   -[no]amgb           boolean    [Y] Determines whether columns containing
                                  gap bases (indels) are also tagged.
   -[no]amgbemc        boolean    [Y] Only takes effect when -amgb is set to
                                  'Y'. Determines whether multiple columns
                                  containing gap bases (indels) are also
                                  tagged.
   -[no]amgbnbs        boolean    [Y] Only takes effect when -amgb is set to
                                  'Y'. Determines whether, for both tagging
                                  columns containing gap bases, both strands
                                  need to have a gap. Setting this to 'N' is
                                  not recommended except when working in
                                  desperately low coverage situations.
   -dismin             integer    [500] The minimum distance that read pairs
                                  may be apart. There is an additional error
                                  margin of 10% subtracted from this value
                                  during internal computations. (Integer 0 or
                                  more)
   -dismax             integer    [5000] The maximum distance that read pairs
                                  may be apart. There is an additional error
                                  margin of 10% added to this value during
                                  internal computations. (Integer 0 or more)
   -ace                boolean    [N] Once contigs have been build, mira can
                                  call a built-in version of the automatic
                                  contig editor EdIt. EdIt will try to resolve
                                  discrepancies in the contig by performing
                                  trace analysis and correct even hard to
                                  resolve errors. This option is always
                                  useful, but especially in conjunction with
                                  -nop and -ure. Notice: the current
                                  development version has a memory leak in the
                                  editor, therefore the option is not
                                  automatically turned on.
   -[no]sem            boolean    [Y] If set to 'Y' the automatic editor will
                                  not take error hypotheses with a low
                                  probability into account, even if all the
                                  requirements to make an edit are fulfilled.
   -ct                 integer    [50] The higher this value, the more strict
                                  the automatic editor will apply its internal
                                  rule set. Going below 40 is not
                                  recommended. (Integer from 1 to 100)
   -[no]orc            boolean    [Y] Output CAF results
   -[no]org            boolean    [Y] Output GAP4 results
   -[no]orf            boolean    [Y] Output FASTA results
   -ora                boolean    [N] Output ACE results
   -[no]ort            boolean    [Y] Output TXT results
   -[no]ors            boolean    [Y] Output TCS results
   -orh                boolean    [N] Output HTML results
   -otc                boolean    [N] Output temporary CAF results
   -otg                boolean    [N] Output temporary GAP4 results
   -otf                boolean    [N] Output temporary FASTA results
   -ota                boolean    [N] Output temporary ACE results
   -ott                boolean    [N] Output temporary TXT results
   -ots                boolean    [N] Output temporary TCS results
   -oth                boolean    [N] Output temporary HTML results
   -oetc               boolean    [N] Output extra temporary CAF results
   -oetg               boolean    [N] Output extra temporary GAP4 results
   -oetf               boolean    [N] Output extra temporary FASTA results
   -oeta               boolean    [N] Output extra temporary ACE results
   -oett               boolean    [N] Output extra temporary TXT results
   -oeth               boolean    [N] Output extra temporary HTML results
   -tcpl               integer    [60] When producing an output in text format
                                  (-ort|ott|oett), this parameter defines how
                                  many bases each line of an alignment should
                                  contain. (Integer 1 or more)
   -hcpl               integer    [60] When producing an output in text format
                                  (-orh|oth|oeth), this parameter defines how
                                  many bases each line of an alignment should
                                  contain. (Integer 1 or more)
   -gapfda             string     [gap4da] Defines the extension of the
                                  directory where mira will write the result
                                  of an assembly ready to import into the
                                  Staden package (GAP4) in Direct Assembly
                                  format. The name of the directory will then
                                  be _. (Any string)
   -log                string     [miralog] Defines the directory where mira
                                  will write some log files to. Note that the
                                  name of the actual project will be
                                  prepended. (Any string)
   -co                 string     [mira_out.caf] Defines the file in CAF
                                  format to save an assembled project to.
                                  Filename must end with '.caf'. (Any string)

   Associated qualifiers:

   "-expdir" associated qualifiers
   -extension          string     Default file extension

   "-scfdir" associated qualifiers
   -extension          string     Default file extension

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

Qualifier Type Description Allowed values Default

Standard (Mandatory) qualifiers

-project string Default is mira. Defines the project name for this assembly. The project name automatically influences the name of input and output files / directories. E.g. in the default setting, the file names for the output of the assembly in FASTA format would be mira_out.fasta and mira_out.fasta.qual. Setting the project name to 'MyProject' would generate MyProject_out.fasta and MyProject_out.fasta.qual. Any string mira

Additional (Optional) qualifiers

(none)

Advanced (Unprompted) qualifiers

-paramsfile infile Loads parameters from the filename given. Allows a maximum of 10 levels of recursion, i.e. a -params option appearing within a file that loads other parameter files Input file Required

-setparam list Sets parameters suited for loading sequences from FASTA, PHD or CAF files. The default is not to specify the type of input file.
unspecified (Unspecified)
fasta (Fasta)
phd (PHD)
caf (CAF)
unspecified

-expdir directory Defines the directory where mira should search for experiment files (EXP). Directory .

-scfdir directory Defines the directory where mira should search for SCF files Directory .

-feifile infile Defines the file of filenames where the names of the EXP files of a project are located. Input file mira_in.fofn

-fpifile infile Defines the file of filenames where the names of the PHD files of a project are located. Input file mira_in.fofn

-pifile infile Defines the PHD file to load sequences of a project from. Input file mira_in.phd

-faifile infile Defines the FASTA file to load sequences of a project from. Input file mira_in.fasta

-fqifile infile Defines the fasta file to load base qualities of a project from. Although the order of reads in the quality file does not need to be the same as in the fasta or fofn projects (although it saves a bit of time if they are). Input file mira_in.fasta.qual

-cifile infile Defines the file to load a CAF project from. Filename must end with '.caf'. Input file mira_in.caf

-sdifile infile Defines the file to load straindata from. Only used in EST projects (miraEST). Input file mira_straindata_in.txt

-xtiifile infile Defines the file to load a trace info file in XML format from. This can be used both when merging XML data to loaded files or when loading a project from an XML trace info file. Input file mira_xmltraceinfo_in.xml

-genome list Quality grades of de-novo genome assembly. Draft is quick-and-dirty, suited to get a first look on approximate coverage of a running project. Should not be used for anything else. Normal is the default parameter set of mira that is able to tackle most genomes. A bit slower than the draft version, but includes such options as read extension and vector remnant clipping. Accurate is still slower than the normal mode but should be used for genomes that pose a problem to the normal mode.
draft (Draft)
normal (Normal)
accurate (Accurate)
normal

-mapping list Work like the -genome switches except they are to be used when performing mapping assemblies against given backbone sequences.
draft (Draft)
normal (Normal)
accurate (Accurate)
normal

-clipping list Three clipping grade modifiers, from light clipping when working with well preprocessed sequences to heavy clipping when the sequences that are being assembled had only sloppy or no preprocessing. Note 1 - the light version is already included in the -genome and -mapping switches. Note 2 - it is recommended that you perform a thorough preprocessing (clipping sequencing vector stretches, clipping of low quality bases, tagging standard repeats etc.) before assembling sequences. The clipping routines of mira are more optimised to cope with the last remnants of wrongly preprocessed sequences than with sequences having had no pre-processing at all.
light (Light)
medium (Medium)
heavy (Heavy)
medium

-highlyrepetitive boolean A modifier switch for genome data that is deemed to be highly repetitive. The assemblies will run slower due to more iterative cycles that give mira a chance to resolve nasty repeats. Boolean value Yes/No No

-highqualitydata boolean A modifier switch when the sequences that are used are of exceptional quality. mira will then bump up a few quality parameters which should lead to less false positives in the repeat and SNP detection routines. Boolean value Yes/No No

-estmode boolean Switches mira to a good initial preset for assembling EST data. Note that this is not needed (and even counterproductive) when used with miraEST. Boolean value Yes/No No

-horrid boolean Sets a number of parameters useful when dealing with really horrid data sets. Useful means that parameters are chosen to so that time and memory consumption do not explode beyond all hope of the program returning. Note that MIRA will return in most cases useful assemblies with this switch, but these might not be as optimised as with normal operation. The definition of 'horrid' is a bit flexible, for example, (a) a genomic projects with more than 2.000 reads that all seem to align partly to each other but have different repetitive structures or (b) EST clusters with a few thousand almost similar reads. Boolean value Yes/No No

-borg boolean Sets several parameters to have mira try to assemble as many reads as possible. Will probably slow down the assembly process and use more memory. 'We are MIRA of borg. You will be assembled, resistance is futile!' Boolean value Yes/No No

-lj list Defines whether to load and assemble EXP files from a file of filenames ('mira_in.fofn'), load and assemble FASTA sequences ('mira_in.fasta') and their qualities ('mira_in.fasta.qual'), load and assemble sequences or qualities from a phd file ('mira_in.phd') or to load a project from a CAF file ('mira_in.caf') and assemble or eventually reassemble it. N.B. fofnphd is not currently available.
fofnexp (EXP files from a file of filenames)
fasta (Load and assemble FASTA)
caf (Load and assemble CAF)
phd (Load and assemble PHD)
fofnphd (PHD files from a file of filenames)
fofnexp

-fo boolean If set to 'Y', the project will not be assembled and no assembly output files will be produced. Instead, the project files will only be loaded. This switch is useful for checking consistency of input files. Boolean value Yes/No No

-mxti boolean Some file formats above (FASTA, PHD or even CAF and EXP) possibly don't contain all the info necessary or useful for each read of an assembly. Should additional information, such as like clipping positions etc., be available in a XML trace info file in NCBI format (see File formats), then set this option to 'Y' and it will be merged to the data loaded. Please note, quality clippings given here will override quality clippings loaded earlier or performed by mira. Minimum clippings will still be made by the program, though. Boolean value Yes/No No

-rns list Defines the centre naming scheme for read suffixes. Currently, only Sanger Institute and TIGR naming schemes are supported out of the box. How to choose? Please read the documentation available at the different centres or ask your sequence provider. In a nutshell, the Sanger scheme is 'somename.[pqsfrw][12][bckdeflmnpt][a|b|c|...' (e.g. U13a08f10.p1ca), TIGR scheme is 'somenameTF*|TR*|TA*' (e.g. GCPBN02TF or GCPDL68TABRPT103A58B).
sanger (Sanger)
tigr (TIGR)
sanger

-eq list Defines the source format for reading qualities from external sources. Normally takes effect only when these are not present in the format of the load_job project (EXP and FASTA can have them, CAF and PHD must have them).
none (None)
SCF (SCF)
SCF

-eqo boolean Only takes effect when 'lj' is fofnexp. Defines whether or not the qualities from the external source override the possibly loaded qualities from the load job project. This might be of use in case some post-processing software fiddles around with the quality values of the input file but one wants to have the original ones. Boolean value Yes/No No

-[no]droeqe boolean Should there be a major mismatch between the external quality source and the sequence (e.g. the base sequence read from a SCF file does not match the originally read base sequence), should the read be excluded from assembly or not. If not, it will use the qualities it had before trying to load the external qualities (either default qualities or the ones loaded from the original source). Boolean value Yes/No Yes

-[no]uti boolean Two reads sequenced from the same clone template form a read pair with a known minimum and maximum distance. This feature will definitively help for contigs containing lots of repeats. Set this to 'Y' if your data contains information on insert sizes. Information on insert sizes can be given via the SI tag in EXP files (for each read pair individually), or for the whole project using dismin and dismax Boolean value Yes/No Yes

-ess integer Controls the starting step of the EST assembly and is therefore only useful in miraEST. EST assembly is a three step process, each with different settings to the assembly engine, with the result of each step being saved to disk. If results of previous steps are present in a directory, one can easily 'play around' with different setting for subsequent steps by reusing the results of the previous steps and directly starting with step two or three. Integer from 1 to 4 1

-[no]ps boolean Controls whether date and time are printed out during the assembly. Suppressing it isn't useful in normal operation, only when debugging or benchmarking. Boolean value Yes/No Yes

-lsd boolean Straindata is a key value file, one read per line. First the name of the read, then the strain name of the organism the read comes from. It is used by the program to differentiate different types of SNPs appearing in organisms and classifying them. Boolean value Yes/No No

-lb boolean A backbone is a sequence (or a previous assembly) that is used as a template for the current assembly. The current assembly process will first assemble reads to loaded backbone contigs before creating new contigs. This feature is helpful for assembling against previous (and already possibly edited) assembly iterations, or to make a comparative assembly of two very closely related organisms. Please read 'very closely related' as in 'only SNP mutations or short indels present'. Boolean value Yes/No No

-sbuip integer When assembling against backbones, this parameter defines the pass iteration (see nop) from which on the backbones will be really used. In the passes preceding this number, the non-backbone reads will be assembled together as if no backbones existed. This allows mira to correctly spot repetitive stretches that differ by single bases and tag them accordingly. Rule of thumb - if backbones belong to the same strain as the reads to assemble, set to 1. If backbones are a different strain, then set sbuib to 1 lower than nop (example - nop 4 and sbuip 3). Integer 1 or more 3

-bsn string Defines the name of the strain that the backbone sequences have. Any string

-bft list Defines the filetype of the backbone file given. Currently (2.8.1 ) only FASTA, CAF and GBF files are supported. When GBF (GenBank files, also named .gbk) files are loaded, the features within these files are automatically transformed into Staden-compatible tags and get passed through the assembly.
fasta (Fasta)
caf (CAF)
gbf (GenBank)
fasta

-brl integer Parameter for the internal sectioning size of the backbone. Extremely repetitive sequences may require reducing the default value, but the default value should work well in 99.9% of all cases. Integer from 1000 to 3000 2500

-bbq integer Defines the default quality that the backbone sequences have if they came without quality values in their files (like in GBF format or when FASTA is used without .qual files). A value of -1 causes mira to use the same default quality for backbones as for reads. Integer from -1 to 100 -1

-[no]abnc boolean The standard mode of the assembler is to assemble available reads to a backbone and make new contigs with the remaining reads. If this option is set to 'N', the reads that cannot be assembled into existing contigs are put as singlets into the assembly, not forming new contigs. Boolean value Yes/No Yes

-mrl integer Minimum length that reads must have to be considered for the assembly. Shorter sequences will be filtered out at the beginning of the process and won't be present in the final project. Integer 20 or more 40

-nop integer Defines how many iterations of the whole assembly process are done. Rule of thumb - for quick and dirty assembly use 1 (not recommended). For assembly using read extensions and / or automatic contig editing (-ure and -ace) use at least 2. The recommended setting is 3 or higher, as some knowledge generated by the assembler can be used only from the third iteration on. More than 3 passes might be useful for projects containing many repetitive elements. See also -rbl and -mr for parameters that affect the assembly and disentanglement of possible repeats. Integer 1 or more 3

-[no]sep boolean Defines whether the skim algorithm (and with it also the recalculation of Smith-Waterman alignments) is called in between each main pass. If set to 'N', skimming is done only when needed by the workflow, either when read extensions are searched for (-ure) or when possible vector leftovers are to be clipped (-pvc). Setting this option to 'Y' is highly recommended, setting it to 'N' is only for quick and dirty assemblies. Boolean value Yes/No Yes

-rbl integer Defines the maximum number of times a contig can be rebuilt during main assembly passes (-nop) if misassemblies, due to possible repeats, are found. Integer 1 or more 2

-sd boolean Default is 'Y' for mira and 'N' for miraEST. A spoiler can be either a chimeric read or it is a read with long parts of unclipped vector sequence still included (that was too long for the -pvc vector leftover clipping routines). A spoiler typically prevents contigs being joined; MIRA will cut them back so that they present no more harm to the assembly. Recommended for assemblies of mid-to-high coverage genomic assemblies; not recommended for assemblies of ESTs as one might lose splice variants with that. A minimum number of two assembly passes (-nop) must be run for this option to take effect. Boolean value Yes/No No

-[no]sdlpo boolean Defines whether the spoiler detection algorithms are run only for the last pass or for all passes (-nop). Takes effect only if spoiler detection (-sd) is on. Boolean value Yes/No Yes

-bdq integer Defines the default base quality of reads that have no quality read from a file. Integer 0 or more 10

-[no]ugpf boolean MIRA has two different pathfinder algorithms it chooses from to find its way through the (more or less) complete set of possible sequence overlaps; a genomic and an EST pathfinder. The genomic looks a bit into the future of the assembly and tries to stay on safe grounds using a maximum of information already present in the contig that is being built. The EST version, on the contrary, will directly jump at the complex cases posed by very similar repetitive sequences and try to solve those first; it is willing to fall down to brute force when really bad cases (such as coverage with thousands of sequences) are encountered. Generally, the genomic pathfinder will also work quite well with EST sequences (but might get slowed down a lot in pathological cases), while the EST algorithm does not work so well on genomes. If in doubt, leaveas 'Y' for genome projects and set to 'N' for EST projects. Boolean value Yes/No Yes

-[no]uess boolean Another important switch if you plan to assemble non-normalised EST libraries, where some ESTs may reach coverages of several hundreds or thousands of reads. This switch lets MIRA save a lot of computational time when aligning those extremely high coverage areas (but only there), at the expense of some accuracy. Boolean value Yes/No Yes

-esspd integer Defines the number of potential partners a read must have for MIRA switching into emergency search stop mode for that read. Integer 1 or more 500

-umcbt boolean Defines whether there is an upper limit of time to be used to build one contig. Set this to 'Y' in EST assemblies where you think that extremely high coverages occur. Less useful for assembly of genomic sequences. Boolean value Yes/No No

-bts integer Depending on -umcbt above, this number defines the time in seconds alloted to building one contig. Integer 1 or more 10000

-[no]ure boolean Defines whether there is an upper limit of time to be used to build one contig. Set this to 'Y' in EST assemblies where you think that extremely high coverages occur. Less useful for assembly of genomic sequences. Boolean value Yes/No Yes

-rewl integer Only takes effect when -ure is set to 'Y'. The read extension routines use a sliding window approach on Smith-Waterman alignments. This parameter defines the window length. Integer 1 or more 30

-rewme integer Only takes effect when -ure is set to 'Y'. The read extension routines use a sliding window approach on Smith-Waterman alignments. This parameter defines the number maximum number of errors (disagreements) between two alignments in the given window. Integer 1 or more 2

-feip integer Only takes effect when -ure is set to 'Y'. The read extension routines can be called before assembly and/or after each assembly pass (see -nop). This parameter defines the first pass in which the read extension routines are called. The default of 0 tells mira to extend the reads the first time before the first assembly pass. Integer 0 or more 0

-leip integer Only takes effect when -ure is set to 'Y'. The read extension routines can be called before assembly and/or after each assembly pass (see -nop). This parameter defines the last pass in which the read extension routines are called. The default of 0 tells mira to extend the reads the last time before the first assembly pass. Integer 0 or more 0

-tpae boolean This option is useful in EST assembly. Poly-AT stretches at the end of reads that were not correctly masked or clipped in pre-processing steps from external programs get tagged here. The assembler will not use these stretches for critical operations. Additionally, the tags do provide a good visual anchor when looking at the assembly with different programs. Boolean value Yes/No No

-pbwl integer Only takes effect when -tpae is set to 'Y'. Defines the window length within which all bases (except the maximum number of errors allowed) must be either A or T to be considered a polybase stretch. Integer 1 or more 7

-pbwme integer Only takes effect when -tpae is set to 'Y. Defines the maximum number of errors allowed in a given window length such that a stretch is considered to be a polybase stretch. The distribution of these errors is not important. Integer 1 or more 2

-pbwgd integer Only takes effect when -tpae is set to 'Y'. Defines the number of bases from the end of a sequence (if masked, from the end of the masked area) within which a polybase stretch is looked for without finding one. Integer 1 or more 9

-[no]pvc boolean Mira will try to identify possible sequencing vector relicts present at the start of a sequence and clip them away. These relicts are usually a few bases long and were not correctly removed from the sequence in data pre-processing steps of external programs. You might want to turn off this option if you know (or think) that your data contains a lot of repeats and the option below to fine tune the clipping behaviour does not give the expected results. Boolean value Yes/No Yes

-pvcmla integer The clipping of possible vector relicts option works quite well. Unfortunately the bounds of repeats or differences in EST splice variants sometimes show the same alignment behaviour as possible sequencing vector relicts and could therefore also be clipped. To stop the vector clipping from mistakenly clipping repetitive regions or EST splice variants, this option puts an upper bound to the number of bases a potential clip is allowed to have. If the number of bases is below or equal to this threshold then the bases are clipped. If the number of bases exceeds the threshold then the clip is NOT performed. Setting the value to 0 turns off the threshold i.e. clips are then always performed if a potential vector is found. Integer 0 or more 18

-qc boolean Default is 'N', but is automatically set to 'Y' when using the setparam options 'fasta' or 'phd' (can be turned off again by subsequent options afterwards). This will let mira perform its own quality clipping before sequences are entered into the assembly. The clip function performed is a sequence end window quality clip with back iteration to get a maximum number of bases as useful sequence. Note that the bases clipped away here can still be used afterwards if there is enough evidence supporting their correctness when the option -ure is turned on. Boolean value Yes/No No

-qcmq integer This is the minimum quality required of bases in a window in order to be accepted. Please be cautious and don't use extreme values here, because then the clipping will be too lax or too harsh. Values below 15 and higher than 35 are disallowed. Integer from 15 to 35 20

-qcwl integer This is the length of a window in bases for the quality clip. Integer 10 or more 30

-[no]mbc boolean This will let mira perform a 'clipping' of bases that were masked out (replaced with the character X). It is generally not a good idea to use mask bases to remove unwanted portions of a sequence; the EXP file format and the NCBI traceinfo format have excellent possibilities to circumvent this. But because a lot of pre-processing software is built around cross_match, scylla- and phrap-style base masking, the need arised for mira to be able to handle this too. mira will look at the start and end of each sequence to see whether there are masked bases that should be 'clipped'. Boolean value Yes/No Yes

-mbcgs integer While performing the clip of masked bases, mira will look if it can merge larger chunks of masked bases that are a maximum of -mbcgs apart. Integer 0 or more 20

-mbcmfg integer While performing the clip of masked bases at the start of a sequence, mira will allow up to this number of unmasked bases in front of a masked stretch. Integer 0 or more 40

-mbcmeg integer While performing the clip of masked bases at the end of a sequence, mira will allow up to this number of unmasked bases behind a masked stretch. Integer 0 or more 60

-[no]emlc boolean If on, ensures a minimum left clip on each read according to the parameters in -mlcr & -smlc Boolean value Yes/No Yes

-mlcr integer If -emlc is 'Y', checks whether there is a left clip whose length is at least the size specified here. Integer 0 or more 25

-smlc integer If -emlc is 'Y' and the actual left clip is < -mlcr, then set the left clip of read to the value given here. Integer 0 or more 30

-bph integer Default is 14 on 32 bit systems and 16 on 64 bit systems. Controls the number of consecutive bases n which are used as a word hash. The higher the value the faster the search. The lower the value the more weak matches are found. Values below 10 are not recommended. Integer 1 or more 14

-hss integer This is a parameter controlling the stepping increments with which hashes are generated. This allows for a more fine-grained search as matches are now found with at least n+s (see -bph) equal bases instead of the SSAHA 2n. The higher the value the faster the search. The lower the value the more weak matches are found. Integer 1 or more 4

-pr integer Controls the relative percentage of exact word matches in an approximate overlap that has to be reached to accept the overlap as a possible match. Increasing this number will decrease the number of possible alignments that have to be checked by Smith-Waterman later on in the assembly, but it might also lead to the rejection of weaker overlaps (i.e. overlaps that contain a higher number of mismatches). Integer 1 or more 50

-mhpr integer Controls the maximum number of possible hits one read can maximally transport to the Smith-Waterman alignment phase. If more potential hits are found, only the best ones are taken. This is an important option for tackling projects that contain extreme assembly conditions. For example, 5000 reads that are all very similar would generate around 40 to 50 million possible alignments (forward and reverse complement). Setting this parameter to 200 reduces the number of alignments to check to around 1.5-2 million. As the assembly increases in passes (-nop), different combinations of possible hits will be checked, always the probably best ones first. So the accuracy of the assembly should only suffer when lowering this number too much. Integer 1 or more 200

-bip integer The banded Smith-Waterman alignment uses this percentage number to compute the bandwidth it has to use when computing the alignment matrix. E.g. expected overlap is 150 bases, bip=10 -> the banded SW will compute a band of 15 bases to each side of the expected alignment diagonal, thus allowing up to 15 unbalanced inserts / deletes in the alignment. INCREASING AND DECREASING THIS NUMBER - increasing will find more non-optimal alignments but will also increase SW runtime between linear and ^2, decreasing will work the other way round (it might miss a few bad alignments but gain speed). Integer from 1 to 100 15

-bmin integer Minimum bandwidth in bases to each side. Integer 1 or more 25

-bmax integer Maximum bandwidth in bases to each side. Integer 1 or more 50

-mo integer Minimum number of overlapping bases needed in an alignment of two sequences to be accepted. Integer 1 or more 15

-ms integer Describes the minimum score of an overlap to be taken into account for assembly. mira uses a default scoring scheme for SW align. Each match counts 1, a match with an N counts 0, each mismatch with a non-N base -1 and each gap -2. Use a bigger score to weed out a number of chance matches, a lower score to perhaps find the single (short) alignment that might join two contigs together (at the expense of computing time and memory). Integer 1 or more 15

-mrs integer Describes the min percentage of matching between two reads to be considered for assembly. Increasing this number will save memory but one might lose possible alignments. A maximum of 80 is probably sensible here. Decreasing below 55 will probably make memory and time consumption explode. Integer from 1 to 100 65

-egp boolean Defines whether or not to increase penalties applied to alignments containing long gaps. Setting this to 'Y' might help in projects with frequent repeats. On the other hand, it is definitively disturbing when assembling very long reads containing multiple long indels in the called base sequence ... although this should not happen in the first place and is a sure sign for problems lying ahead. When in doubt, set it to 'Y' for EST projects and de-novo genome assembly, set it to 'N' for assembly of closely related strains (assembly against a backbone). When set to 'N', it is recommended to have -amgb and -amgbemc both set to 'Y'. Boolean value Yes/No No

-egpl list Has no effect if extra_gap_penalty is off. Defines an extra penalty applied to 'long' gaps. There are these predefined levels - 1. low - use this if you expect your base caller frequently misses two or more bases. 2. medium - use this if your base caller is expected to frequently miss one to two bases. 3. high - use this if your base caller does not frequently miss more than one base. For some stages of the EST assembly process, a special value 'est' is used.
low (Low)
medium (Medium)
high (High)
est (EST split splices)
low

-megpp integer Has no effect if extra_gap_penalty is off. Defines the maximum extra penalty in percent applied to 'long' gaps. Integer from 1 to 100 100

-np string Contigs will have this string prepended to their names. Any string mira

-an list When adding reads to a contig, dangerous regions can get an extra integrity check. none = no extra check. text = check is only text-based. signal = check is signal based, if the SCF trace is not available, fallback is 'text'. For the time being, only regions tagged as ALUS or REPT in the experiment file are considered dangerous.
none (None)
text (Text)
signal (Signal)
signal

-rodirs integer When adding reads to a contig, reject the reads if the drop in the quality of the consensus is > the given value in %. Lower values mean stricter checking. This value is doubled should a read be entered that has a template partner (a read pair) at the right distance. Integer from 1 to 100 15

-dmer integer When adding reads to a contig, reject the reads if the error in zones known as dangerous exceeds the given value in %. Lower values mean stricter checking in these danger zones. For the time being, only regions tagged as ALUS or REPT in the experiment file are considered dangerous. Integer from 1 to 100 1

-[no]mr boolean One of the most important switches in MIRA. If set to 'Y', MIRA will try to resolve misassemblies due to repeats by identifying single base stretch differences and tag those critical bases as RMB (Repeat Marker Base, weak or strong). This switch is also needed when MIRA is run in EST mode to identify possible inter-, intra- and intra-and-interorganism SNPs. Boolean value Yes/No Yes

-asir boolean Only takes effect when -mr is set to 'Y', effect is also dependent on the fact whether strain data (see -lsd) is present or not. Usually, mira will mark bases that differentiate between repeats, when a conflict occurs between reads that belong to one strain. If the conflict occurs between reads belonging to different strains they are marked as SNP. However, if this switch is set to 'Y',= then conflicts within a strain are also marked as SNP. This switch is mainly used in assemblies of ESTs; it should not be set for genomic assembly. Boolean value Yes/No No

-mrpg integer Only takes effect when -mr is set to 'Y'. This defines the minimum number of reads in a group that are needed for the RMB (Repeat Marker Bases) or SNP detection routines to be triggered. A group is defined by the reads carrying the same nucleotide for a given position, i.e., an assembly with mrpg=2 will need at least two times two reads with the same nucleotide (having at least a quality as defined in -mgqrt) to be recognised as repeat marker or a SNP. Setting this to a low number increases sensitivity, but might produce a few false positives, resulting in reads being thrown out of contigs because of falsely identified possible repeat markers (or wrongly recognised as SNP). Integer 2 or more 2

-mgqrt integer Only takes effect when -mr is set to 'Y'. This defines the minimum quality of a group of bases to be taken into account as potential repeat marker. The lower the number, the more sensitive you get, but lowering below 25 is not recommended as a lot of wrongly called bases can have a quality approaching this value and you'd end up with a lot of false positives. The higher the overall coverage of your project the better, and the higher you can set this number. A value of 35 will probably remove all false positives, a value of 40 will probably never show false positives. Integer 25 or more 30

-emea integer Only takes effect when -mr is set to 'Y'. Using the end of sequences of Sanger type shotgun sequencing is always a bit risky, as wrongly called bases tend to crowd there or some sequencing vector relicts hang around. It is even more risky to use these stretches for detecting possible repeats, so one can define an exclusion area where the bases are not used when determining whether a mismatch is due to repeats or not. Integer 0 or more 15

-[no]amgb boolean Determines whether columns containing gap bases (indels) are also tagged. Boolean value Yes/No Yes

-[no]amgbemc boolean Only takes effect when -amgb is set to 'Y'. Determines whether multiple columns containing gap bases (indels) are also tagged. Boolean value Yes/No Yes

-[no]amgbnbs boolean Only takes effect when -amgb is set to 'Y'. Determines whether, for both tagging columns containing gap bases, both strands need to have a gap. Setting this to 'N' is not recommended except when working in desperately low coverage situations. Boolean value Yes/No Yes

-dismin integer The minimum distance that read pairs may be apart. There is an additional error margin of 10% subtracted from this value during internal computations. Integer 0 or more 500

-dismax integer The maximum distance that read pairs may be apart. There is an additional error margin of 10% added to this value during internal computations. Integer 0 or more 5000

-ace boolean Once contigs have been build, mira can call a built-in version of the automatic contig editor EdIt. EdIt will try to resolve discrepancies in the contig by performing trace analysis and correct even hard to resolve errors. This option is always useful, but especially in conjunction with -nop and -ure. Notice: the current development version has a memory leak in the editor, therefore the option is not automatically turned on. Boolean value Yes/No No

-[no]sem boolean If set to 'Y' the automatic editor will not take error hypotheses with a low probability into account, even if all the requirements to make an edit are fulfilled. Boolean value Yes/No Yes

-ct integer The higher this value, the more strict the automatic editor will apply its internal rule set. Going below 40 is not recommended. Integer from 1 to 100 50

-[no]orc boolean Output CAF results Boolean value Yes/No Yes

-[no]org boolean Output GAP4 results Boolean value Yes/No Yes

-[no]orf boolean Output FASTA results Boolean value Yes/No Yes

-ora boolean Output ACE results Boolean value Yes/No No

-[no]ort boolean Output TXT results Boolean value Yes/No Yes

-[no]ors boolean Output TCS results Boolean value Yes/No Yes

-orh boolean Output HTML results Boolean value Yes/No No

-otc boolean Output temporary CAF results Boolean value Yes/No No

-otg boolean Output temporary GAP4 results Boolean value Yes/No No

-otf boolean Output temporary FASTA results Boolean value Yes/No No

-ota boolean Output temporary ACE results Boolean value Yes/No No

-ott boolean Output temporary TXT results Boolean value Yes/No No

-ots boolean Output temporary TCS results Boolean value Yes/No No

-oth boolean Output temporary HTML results Boolean value Yes/No No

-oetc boolean Output extra temporary CAF results Boolean value Yes/No No

-oetg boolean Output extra temporary GAP4 results Boolean value Yes/No No

-oetf boolean Output extra temporary FASTA results Boolean value Yes/No No

-oeta boolean Output extra temporary ACE results Boolean value Yes/No No

-oett boolean Output extra temporary TXT results Boolean value Yes/No No

-oeth boolean Output extra temporary HTML results Boolean value Yes/No No

-tcpl integer When producing an output in text format (-ort|ott|oett), this parameter defines how many bases each line of an alignment should contain. Integer 1 or more 60

-hcpl integer When producing an output in text format (-orh|oth|oeth), this parameter defines how many bases each line of an alignment should contain. Integer 1 or more 60

-gapfda string Defines the extension of the directory where mira will write the result of an assembly ready to import into the Staden package (GAP4) in Direct Assembly format. The name of the directory will then be <projectname>_.<extension> Any string gap4da

-log string Defines the directory where mira will write some log files to. Note that the name of the actual project will be prepended. Any string miralog

-co string Defines the file in CAF format to save an assembled project to. Filename must end with '.caf'. Any string mira_out.caf

Associated qualifiers

"-expdir" associated directory qualifiers

-extension string Default file extension Any string

"-scfdir" associated directory qualifiers

-extension string Default file extension Any string

General qualifiers

-auto boolean Turn off prompts Boolean value Yes/No N

-stdout boolean Write first file to standard output Boolean value Yes/No N

-filter boolean Read first file from standard input, write first file to standard output Boolean value Yes/No N

-options boolean Prompt for standard and additional values Boolean value Yes/No N

-debug boolean Write debug output to program.dbg Boolean value Yes/No N

-verbose boolean Report some/full command line options Boolean value Yes/No Y

-help boolean Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose Boolean value Yes/No N

-warning boolean Report warnings Boolean value Yes/No Y

-error boolean Report errors Boolean value Yes/No Y

-fatal boolean Report fatal errors Boolean value Yes/No Y

-die boolean Report dying program messages Boolean value Yes/No Y

-version boolean Report version number and exit Boolean value Yes/No N

Input file format

emiraest reads any normal sequence USAs.

Output file format

emiraest outputs a graph to the specified graphics device. outputs a report format file. The default format is ...

Output files for usage example

File: EdIt.log

Directory: step1_info

This directory contains output files.

Directory: step1_log

This directory contains output files.

Directory: step1_results

This directory contains output files.

File: step1_in.fasta

>gnlti136477494
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCG
GCCGAGGTACGCAGTGACACCAACTGTTGGAGTAACAATGACATCCGCTATAGAAAATAT
CTTCTGGTGAAACTTTAGTTGACGATACCTCATTTTCTGGGCATTTAGATACTCATGACT
GTGAAATGAACCGTACACAGCAAGACCTACTCGCACATCCCATCCTAGCTCACCCTTATT
CATATTCTCTAGGTGTCCAGAGACTGTATTGCTACACTCCGATCCGATTGTTACATAAAT
GTGACAAGCGCATGGNCTCTATTTCTGGTAGAGTCACCTCCACAGTTGTCCATCCGTATT
TGTCTGATAATTTGGAAATAGCGTTAGAACAACAAACTCTGATATCGTCGGAGCAGTCAT
CAAACCACTTTCCGTATTTTGGCATTTTTATGTCTGAAAACGCATAGTTTGCGGATTTTA
GCAAGGGCAGACCTACTTTGGGCACTTTTAGGTCGGATGAAAGGTCCCCAGCCATAGCTG
CATTAGCAATGAGTGCATCCTCGACTGTTTGCTGCAGAACAACGAGCATCCCAATGGTAT
AGTTTACCGGAAGAACTCCTTCATGTGGCGCACGGCCAAAAGTCGGTTGAAGCCACTAAA
CACAAAGAGCTGCTGGAGTCTTAAGATTCTCCTCATCGAAACCAGAGCATAAGGACAAAC
CACACCACCAAGCTGCGATCACTGGAGATCTCCGTAATTTGCTTATGGATGATTTTTACG
GCCTATGGGATTTTCGGTATCCGGCCCGTTCTTGTTTTGTTGGCCAATAAGGGCCAAAAC
TAAAGGTAAAAATGATTTTTAATTCTAATGGCTCATTTGCCCTTTT
>gnlti136477495
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAATTCATATTTATAA
ATGTATTTGCATCGATATTCCACGATATACAATTATACAAACAGTTCCCATCATCCTCAA
TTATCAACAAATGAAGCTGAGCAGAAACATAAAGAAACACAAACTGCAAACAATTTTAAC
CCACACAGTAAACCACTTAAAATGCTCAAGAAAGTAAAAGTCAAGATTTTTTCAATGCTG
TTTCATTTAGAAGCTTCATCAACACGAGATTCATTACACGAGATGTTTAGAGAATACTAC
ATGAACACGAGCCCTGGTTTTCTTTCTCCGACTGGTTCTTACCTGTCTTTTTCTTGACAA
TAGCAGGCTGTACAACAACGTGCATTGTAATAACTCCTCCAGGAAGGTCACCGTGATTTA
CTCTAGACTCGGCAAGTGTTTTTCCATTTTCCAAAACCTTTCCAGCATGAATTAATTTCA
TATCATTCACCGACTTTGGCAACACCGATTTATCTTGAGGGCACTCTGAGAAAATCCGTT
GTTTTAGAGGTTGGATTGGTGTCGACGATGAGTTGACCCATGACTTATATCGGTCATTCA
TTTTCTAAATTTAAGTCGAGTTGTCGTTTCTTCACCATAGTACCCACCTTTCTGATTTTG
TGGTAGTAAATTCGTGAATGTTAAAATAGAGAAAATATTCAATTACAAGTAACCGAAACG
TAATTAAATGGTATATGACGAGTTACATCAATGACACAGGTAATACCATAGGTCATATTT
AAATCTTAGTAAATTATTGGATTAATTATGGTGTGGGTATG
>gnlti136477496
ACGAGCTGGATCCACTAGTACGGCCGCCAGTGTGCTGGAATTCGGCTTAGCGTGGTCGCG
GCCGAGGTACCTAGATCATTTTTCAAGATAATCAACATGTAAAGTGTAAACCAACAAAAG
GACACTATTTCAGACCTAACATGGCCAGGTATCTACAGCAACCGGCTTCGTTTTGCATTT
ATCGAAGCAGTTTCCATGTCCCCAACGAAGAAAAGGATTTTATCCAAAATACTTAAACTT
GGTCGTCCTTCATCTATCGTTTCCGATCCTCCGTCATTAATCGACTCAGATGCTCGTGAT
TCTGTTTGTCTCGATCCCAAATGCCGTTGAATTTGACCTTGATGAACTAAGACATAGTCA
TCTCCTTCCCTTATTATCTTCAAGCCCAACCCAACTCGATCACATCGATCTTGAACGATG
TAGACTTCTTTCCATGATTTAGAATCTACAGGGGCATAAGATGTGGCCCGATCAATCCCC
CATCTTTCTTTGAAAAGGTCAGACCATAGCGTGTTATCCGANGCCATGTCTCTCCATTTC
CTGCATACCAATTGAGCAGCTGCGAGATTTTGATGATCCCAACAACAGAAAATCTTCAGG
GCAGAGATCCGCTGGCCATTTCTCCATTATCTTTAGCTGGCCCGGGCGGGCGCTCGAAAG
CCGGATTCTGGCGATATTCATCACACTGGCGGCCGTTGAGCATGGTTTTGAAGGGCCAGT
TCGGCCTTTGTTGGTGGATTTCATTTCCTGGCCCGCGTTTTCCACGTCGTACGTGGAAAC
GTGCGTTACCAAGTTTATGCCTTGCACAATCCCCCTTGCCGCTGGGTTCTTGCGAAGGCG
GCGGAGGGCTTCCAGCGGTGGCGCGGATGGAATGGAGGCGGGGGGGCCTTTGTGGGGGGG
GGGGGTTAATT
>gnlti136477497


  [Part of this file has been deleted for brevity]

GTCATGTGTGGACGGCGAGCGTGACTCGGCGCGAGGGTGGATGTGATGAGGATTAGCGTG
AGTGGTGCGATAGCGCTGT
>gnlti136479888
CCGGTCCATTCCATCTTACTGTACCCTCGGCTCTGCTCTCGGTTTAGTTGGTGCTCTAGT
GCGCATGTGTCGGGTCGTCGCTGCGTCGGGGTCGGGTCACGCCTCCCACTGAGCCGCGCT
CTCGTCCCTCAGCCGCGAGTCGGTATACCACCACGTGCAGTAGCGCGGAGCCGGCACGGG
CTCGAACACAGGCACATCGCGCGTCAATAACACGTCGTGGCGAGGAGGGCCGCTACTTTT
TGTTGTCGCTGGCACGAGAGCTATGTCGAGTAGAGTATCGGCGAGTGGTCGAGTGCACGT
GCAGCGGTGGAGGAGTCGAGCGTCACGCGCTATCTCGTGTCGGTTCGTTACGAGCGTGTT
GGGGTAGCGGCGACGGTAGGGCGCAGTGAGCGCGTGGTGGTAAGCTCGATCGTGTAGTGC
GAGGCGTTCGCAGCGCGGTAGTTGATGCCAGGGCTGGCGCGCGGGGGCGGACGCGGGTGG
GGGTAGGGGGGATCGTGGCGGGGGGTAGAACCGGCGAGGGTAGGTGAGCGCCGACGGGGG
TGTGGGCGGGGCGGGAGGAGGAGTGGGGAGCGTAGTGAGAGGACGCGGGCGTAGGTGAGC
GGTCGCGTGCGGTAGGCGGCGGCTGCGGAGTCTGGGTCTGTTGGTGGTGAGGTAGTTCTG
TGCGTCGTGGTTTGTCTCGTTTTAGTGCCGGTCGTACCGGCTGATTTGGTGGCAATCGGC
GGTGGGTGTTGTTGGCGTTGCGCGTGTTGCTGCTGTCGGAGTCGTTTGGGCTTCTGTGTG
GCGTAGTTCCGTGTGTGTCTGTCTCGTCGCGCGGTCGTGCGTTCTGGTCGGTCGCTGTGC
GCGGTAGCGCTTTTGGTGTGTTGGATGTGTCGTGTCGTGGTGTGTCTATGAGCCTCGCGT
CTGATCGTCCGATCGCGTCGCTTGCTTGGTCGCGAGTTCTGTAGCCGATGTCGAGTCGGT
GCGTTCATCGTGATGTCGTGTAGCGTATTCTACATCTTGCGTGTTCGAGATCGTCTGATC
TTCTGCCTCGTTGTTCAGATTCGTACGCTCTCGTTTCGCGCTATTCGTTTAGTCGTGATC
ATTTATCTTCTTCTCTGTGTGTTCTGTCTCGCCAGCCCTTCTCATATGTCGTGACGACAT
TGATAGCATCCATTAGTACGTCTGTCGTGGCGTCGCTTATAGGTAGATTTATCGCTCTCC
CTCTGTGAGTGCTGATGCGAGTTCACGATCCGTTCATTCTCATCGTTTGGTGAGTCCTGA
TGACGATGAGTTCTGGCATACCGTATGATCCATTATGCTCCTCCATCTCCACAGTGTAGT
CCGTTACATTCGTCCGGTCCGATTCATTGGCTATTGTTACGTGACCCGTATCGTACGCGG
TTCGTCGGGCTGCGGGCCTAGTGTAGCGTGGTCGTCGCGTACTTTTGAGTGAGTTAGCTG
CCGCCCGAGTCGTACTCGAACGGTCTACGTGGTTCAGGCATACCGCATGTACGAGTGGTG
TGTCGTTCCATTCGTCCGTGACTAGTTCCGTGTGCGCATACATTGTCGTTCATGTATTGA
TTGTCGTGCTTGTGCGTCGTGTTATTTGGTTCTGTCTGTACTGTCGTCGTGTGAGCATGA
TGTCGTCTGATTCGTTGGCACTTAGGCGGTGCTGGTCTCTAATGCGTGTGTGTGTGCTGT
AGTATGTACTGTCAGTTGATTGGGTGCCGGATCGCGGGGTTGGTGGTTTGTGTGGTTCTG
GGTCATTCAGGGGATGAGTATGCTTAGCCCATTTCT
>gnlti136479889
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGTTAGATTAAGGGGGGTTGTGCGAGAATCAAGGGCGGAGGGGGGGTAGAGGGAGCGG
AGAGGGTGGAGCGCGGGGGGGAGGTGGGGGTGGGGGGGCGGGAGAATGGCAGGTGCGGGG
CTGTCGGGGGAGGGAGGGGGGGGGGGGGGAGATGGGGGGTGGTGGGGGGGGGTAGGTGGG
GAGGCAGAGGGGGGGGGGGGGGAGGGGGTGGGTGTGGGTGGGGGCGGGGGTGGGCTGGTG
GGGGGGGAGTGGCGTGGCTGC

File: step1_nosnps_remain.caf


DNA : gnlti136477494
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCG
GCCGAGGTACGCAGTGACACCAACTGTTGGAGTAACAATGACATCCGCTATAGAAAATAT
CTTCTGGTGAAACTTTAGTTGACGATACCTCATTTTCTGGGCATTTAGATACTCATGACT
GTGAAATGAACCGTACACAGCAAGACCTACTCGCACATCCCATCCTAGCTCACCCTTATT
CATATTCTCTAGGTGTCCAGAGACTGTATTGCTACACTCCGATCCGATTGTTACATAAAT
GTGACAAGCGCATGGNCTCTATTTCTGGTAGAGTCACCTCCACAGTTGTCCATCCGTATT
TGTCTGATAATTTGGAAATAGCGTTAGAACAACAAACTCTGATATCGTCGGAGCAGTCAT
CAAACCACTTTCCGTATTTTGGCATTTTTATGTCTGAAAACGCATAGTTTGCGGATTTTA
GCAAGGGCAGACCTACTTTGGGCACTTTTAGGTCGGATGAAAGGTCCCCAGCCATAGCTG
CATTAGCAATGAGTGCATCCTCGACTGTTTGCTGCAGAACAACGAGCATCCCAATGGTAT
AGTTTACCGGAAGAACTCCTTCATGTGGCGCACGGCCAAAAGTCGGTTGAAGCCACTAAA
CACAAAGAGCTGCTGGAGTCTTAAGATTCTCCTCATCGAAACCAGAGCATAAGGACAAAC
CACACCACCAAGCTGCGATCACTGGAGATCTCCGTAATTTGCTTATGGATGATTTTTACG
GCCTATGGGATTTTCGGTATCCGGCCCGTTCTTGTTTTGTTGGCCAATAAGGGCCAAAAC
TAAAGGTAAAAATGATTTTTAATTCTAATGGCTCATTTGCCCTTTT

BaseQuality : gnlti136477494
7 7 7 9 15 19 24 20 20 20 23 23 29 29 26 21 19 16 9 10 19 25 29 40 40 40 40 29 29 34 34
34 34 35 37 37 40 37 37 32 29 29 33 34 30 34 34 34 35 35 35 40 39 35 35 35 35 35 39 40 45 45
45 45 35 35 35 35 35 35 40 35 35 35 35 35 35 37 37 37 35 45 45 45 45 35 39 35 35 35 35 35 35
35 37 35 35 35 35 35 35 35 35 39 39 37 37 37 39 39 39 39 39 45 37 35 35 39 39 35 37 40 40 40
37 40 40 40 40 40 40 40 56 35 35 28 25 25 25 34 34 35 35 35 35 35 39 39 45 46 46 46 46 46 46
42 42 42 46 39 35 35 35 35 35 35 35 35 35 45 40 40 40 46 46 46 46 42 42 40 46 46 51 51 51 39
39 39 39 39 35 46 46 46 40 40 42 46 40 40 40 40 37 37 40 45 45 45 45 45 45 45 45 40 40 40 46
46 46 34 37 37 48 48 48 46 44 44 36 33 32 32 25 25 27 32 33 36 39 44 46 46 46 46 46 46 46 46
40 39 39 39 33 33 32 27 22 22 26 27 33 36 44 44 48 48 19 16 8 8 14 19 28 36 39 44 46 40 39
36 33 32 32 32 32 32 32 32 32 32 34 32 32 32 32 23 13 12 15 19 25 33 33 25 18 10 10 19 21 33
40 40 25 18 4 0 4 24 24 32 32 26 26 32 32 32 32 32 32 32 33 36 36 33 25 19 15 15 19 22 32
32 32 27 19 15 15 19 19 15 26 27 26 28 28 32 32 27 26 26 19 23 27 32 32 25 25 10 8 8 19 19
26 19 18 18 26 48 48 48 48 40 34 29 32 32 32 32 32 32 32 10 19 10 10 19 19 32 48 48 48 48 48
48 48 48 29 19 18 14 12 19 13 15 15 29 30 32 26 21 21 12 12 9 7 8 19 23 20 14 12 7 10 19
21 19 7 7 6 10 10 10 10 19 12 12 11 11 12 19 24 39 32 26 19 17 8 8 10 19 21 25 25 23 29
31 16 9 7 11 11 16 14 15 19 14 8 8 9 15 11 11 6 6 7 9 16 24 19 14 12 7 7 14 16 16
12 10 10 10 15 29 40 28 25 9 10 6 6 8 6 8 15 13 19 12 21 18 16 12 19 7 7 7 11 8 10
20 15 14 14 7 9 12 12 18 19 24 24 21 11 11 8 8 9 8 15 6 7 14 14 20 18 14 13 11 9 9
7 7 11 11 12 19 23 25 16 10 10 10 15 16 24 14 14 13 21 10 15 11 7 7 10 14 9 7 7 19 13
12 12 12 12 15 25 25 25 21 21 8 8 12 21 12 10 10 14 14 10 13 10 7 11 10 10 16 14 9 9 10
9 16 19 27 19 19 10 7 11 9 13 10 10 7 7 9 9 11 14 14 12 18 14 13 8 8 8 7 13 7 7
11 8 10 12 10 8 8 6 6 8 8 8 7 7 6 9 9 9 9 9 8 9 9 8 8 11 12 6 7 7 7
12 18 13 8 8 6 6 10 7 7 9 9 10 9 10 9 11 7 7 6 6 9 9 14 14 13 11 9 6 6 6
6 7 8 7 7 7 6 6 8 8 8 6 6 8 7 7 13 10 9 9 9 9 9 9 10 9 7 6 6 8 6
6 8 6 7 10 10 8 6 6 10 8 6 6 6 6 9 9 9 7 8 10 8 7 7 6 6 8 7 7 7 7
7 6 8 8 7 7 7 9 9 9 9 10 7 7 10 6 6 8 8 8 6 8 9 8 8 8 9 12 12 7 7
6 8 6 6 8 7 8 8 6 6 6 6 8 7 7 7 7 7 7 9 8 8 6 6 6 6 7 7 7 7 7
7 7 9 9 7 7 13 8 6 6 6 13 7 7 10 11 13 13 9 9 9 6 8 7 7 7 6 9 9 6 6
9 6 4 6 4 6 6 9 8 9 9 6 6 6 6 6 15 8 

Sequence : gnlti136477494


  [Part of this file has been deleted for brevity]

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGTTAGATTAAGGGGGGTTGTGCGAGAATCAAGGGCGGAGGGGGGGTAGAGGGAGCGG
AGAGGGTGGAGCGCGGGGGGGAGGTGGGGGTGGGGGGGCGGGAGAATGGCAGGTGCGGGG
CTGTCGGGGGAGGGAGGGGGGGGGGGGGGAGATGGGGGGTGGTGGGGGGGGGTAGGTGGG
GAGGCAGAGGGGGGGGGGGGGGAGGGGGTGGGTGTGGGTGGGGGCGGGGGTGGGCTGGTG
GGGGGGGAGTGGCGTGGCTGC

BaseQuality : gnlti136479889
7 10 19 19 9 9 10 17 29 25 28 19 14 9 9 19 27 29 33 34 34 29 26 26 22 22 26 26 32 33 35
35 42 42 34 34 34 29 29 29 37 37 40 37 37 37 40 46 51 56 56 56 51 51 51 42 40 40 45 35 35 35
35 33 33 35 35 35 35 45 39 34 34 34 35 35 35 35 35 35 39 40 40 40 37 40 40 48 44 37 35 37 37
40 40 40 45 51 51 40 35 35 35 35 35 42 44 44 44 48 44 44 44 44 48 44 56 45 45 45 45 40 40 43
42 46 40 37 37 37 37 37 44 42 42 42 42 42 42 46 42 42 42 42 42 35 35 35 33 33 23 23 23 29 29
35 35 35 40 40 40 35 35 35 32 32 35 33 37 37 29 23 15 21 16 25 21 35 35 35 35 32 32 32 35 42
56 56 42 42 29 28 24 32 32 35 35 35 33 22 22 29 29 21 17 20 24 24 29 50 37 47 44 50 44 44 29
28 28 29 29 29 35 35 35 35 42 37 44 40 40 35 42 37 42 44 56 42 42 23 23 22 31 31 46 46 56 56
44 44 35 24 19 19 19 21 28 28 32 32 30 29 29 29 32 42 42 42 35 32 32 30 27 30 33 33 42 36 29
35 35 35 29 29 32 34 30 33 28 28 28 28 28 27 27 13 13 13 27 33 42 37 34 34 34 34 33 29 32 31
34 29 29 29 21 14 12 7 7 13 16 24 29 29 32 40 40 37 37 40 33 37 25 25 13 14 15 25 25 35 35
35 37 37 40 40 42 42 56 51 46 34 34 32 32 29 29 31 29 29 21 18 17 17 17 19 22 22 29 29 23 17
17 17 24 29 25 25 20 20 16 8 8 10 21 20 29 23 27 27 33 37 37 37 37 30 27 27 33 27 28 26 26
26 26 24 24 27 32 29 29 30 33 33 40 32 32 22 19 13 9 9 15 23 37 32 29 19 11 9 9 12 16 17
19 18 18 15 23 24 29 30 20 16 16 18 20 26 27 27 27 18 14 9 9 17 18 26 19 13 7 7 10 16 20
29 29 29 29 27 29 29 29 29 29 25 14 12 6 6 8 12 16 23 21 23 23 26 29 29 20 20 20 22 18 11
10 9 9 9 16 24 11 11 11 14 14 21 16 13 7 7 12 12 16 10 8 6 6 8 8 11 13 17 24 20 22
25 25 32 33 34 29 29 24 24 22 19 17 12 12 10 11 13 20 21 10 10 8 8 6 6 8 8 9 9 9 8
7 6 8 6 6 11 14 20 22 22 23 17 13 9 10 10 11 14 9 9 9 8 8 6 6 8 8 9 9 7 7
9 9 9 12 9 9 8 8 9 11 16 8 8 6 6 8 8 9 11 13 24 24 14 8 6 6 10 6 10 17 13
8 6 6 8 8 8 16 17 20 15 10 10 8 8 8 8 8 8 8 6 6 9 9 12 12 9 10 6 6 8 6
6 7 8 9 10 9 8 10 9 8 8 8 8 6 7 11 10 9 9 10 9 9 9 9 9 8 6 6 6 8 6
6 10 8 8 6 8 6 6 8 6 6 8 8 9 9 9 8 7 7 6 8 6 6 6 8 9 12 14 12 11 7
7 13 8 8 8 8 6 6 8 8 6 6 8 6 6 8 8 10 10 9 8 6 6 6 6 8 8 8 9 9 9
8 8 6 6 8 6 6 8 6 6 8 8 12 10 10 8 8 8 6 6 8 6 7 6 8 8 8 10 8 11 8
8 9 6 6 6 6 8 6 6 6 8 13 15 14 11 9 9 9 9 9 11 13 10 10 10 10 9 6 6 6 7
7 10 7 6 9 9 8 8 6 6 6 6 8 8 6 6 8 8 9 8 8 9 9 8 8 8 8 8 6 6 8
8 9 9 6 6 6 6 8 8 8 6 6 8 8 6 6 8 9 8 10 10 13 9 9 9 11 11 10 10 12 12
10 9 9 9 9 9 11 8 10 13 8 8 8 9 9 9 13 13 27 30 30 27 20 8 8 6 6 8 6 6 8
8 6 6 8 6 6 8 8 10 8 8 9 9 9 10 9 9 9 16 17 13 13 6 6 8 6 6 8 8 9 9
8 8 9 10 11 11 17 13 11 13 11 10 11 6 4 4 8 11 11 9 9 8 8 8 8 8 8 9 9 10 12
10 9 6 6 9 6 6 8 6 7 9 10 9 10 13 13 9 9 9 8 

Sequence : gnlti136479889
Is_read
Padded
Insert_size 500 5000
SCF_File "gnlti136479889.scf"
Clipping QUAL 724 723
Align_to_SCF 1 981 1 981

File: step1_snpsinSTRAIN_default.caf


DNA : gnlti136477498
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCGTGGTCGCGGC
CGAGGTACCATCAAGTTAAGAAAACCAAGACATGTCCACAATTTTCACACATTCATTAAC
GCGTTAGAGCTGGCCTGGCCTCTTCAGTATCTGCACAACCTGGCCTCTCGGTTAAAAACT
GTTCCCAAAAGGCATCATTGACTCTCGCTTGCTTCTTGTTACTATGCGCATCACGGGATG
AAGATAATAAATTCCGGTCACCACCAACGTCATCATTACCACGCCTTGTNCTATCCTCGG
GAGGATCCACTTCAATAATTTCGACACGGTCAATGGAGGTTTGACTTTTATTATTGAGCT
CTNAACTAGAAGACGCAAGAGAGAGATTCAAGAGGCAGGACAGATNATCGTCACCCTCGT
CGTTATTTGAAGCCACGGTGTGGCTGCAGTGCAAAGAAAACAGTTTGGGCTTTTCGGGCC
TGTTCTTAANGTGAAAGACGAAGCCTCAGCGGTCGATGAAAGCTCCGAACCTGCGGTCCT
AATGCGCAAATCGTTCCATCCATCTTCGTTGGAGCTCTGCGTGCTATAAAGGGAAATTAA
GTTGACGTCCGAGACAGCTGGCGACAGCTCGAGTCTGAGTTCGGGCCTCGAGTGTTCTGG
TTGTCGAATTGAATATTTCATGTGCCTGATCGGCCCGAGGGAGCTCTCTTCTGGTATACG
CCGAGAATCCATTTGTGAGCTCTGGGAAGGTGTCAAGAATTAGGTTGGAGGGCTTTTCTA
GGAAATAGACCGGTCCGGTTTGGTCATGTTCTACCGTTGGTTGGTTTTTATTTATTGGTT
GGATTTTTTCTTGACCCGAATTGGCTTAATTTTTTCGGGAGGGGAAATTTCC

BaseQuality : gnlti136477498
8 11 11 9 9 10 21 21 34 34 34 39 33 20 19 19 10 10 19 32 40 48 48 44 46 34 34 34 34 34 34
39 40 40 40 40 40 29 29 29 30 30 30 35 35 35 35 35 35 40 40 40 40 45 45 45 45 45 45 51 51 51
39 34 34 34 34 34 34 35 35 35 35 35 34 34 34 35 35 35 40 40 56 51 51 40 40 40 40 40 40 40 40
40 40 40 37 40 35 39 39 39 39 35 39 35 35 35 35 39 39 35 35 35 35 35 35 35 40 40 51 51 35 35
35 35 35 35 43 43 51 56 51 45 45 45 45 45 45 51 51 51 39 39 34 34 34 34 35 39 51 45 45 45 45
40 40 40 40 46 46 51 51 51 51 51 40 35 35 35 35 35 35 39 39 39 39 42 42 42 39 37 40 40 40 40
39 35 35 42 46 46 51 51 51 51 51 45 40 40 40 40 40 35 33 33 33 33 33 34 35 35 35 40 35 34 34
34 34 34 45 51 51 51 51 51 46 46 46 40 40 40 39 34 34 39 36 33 25 19 15 15 19 19 19 10 10 14
8 9 19 14 19 26 22 22 26 23 19 10 10 10 10 17 22 24 25 32 32 33 36 36 40 24 19 8 8 9 10
10 23 32 34 32 32 26 15 19 4 0 4 19 19 23 14 14 11 10 11 17 17 32 26 26 25 25 22 22 23 23
12 12 12 7 7 9 7 7 8 8 8 19 24 48 32 25 21 16 22 19 19 15 10 15 8 8 12 10 7 8 9
15 19 27 32 26 32 32 19 19 9 9 9 9 9 9 19 25 33 24 15 4 0 4 8 19 21 17 15 10 17 21
32 24 24 9 9 9 19 29 33 36 36 33 27 23 12 12 8 8 7 19 8 8 7 12 10 16 18 29 22 26 16
19 4 0 4 25 25 33 33 32 19 15 15 15 19 21 29 29 23 19 15 15 19 12 22 8 10 7 7 9 7 8
13 11 9 11 19 19 19 7 7 11 17 19 13 13 15 17 13 11 7 7 7 12 9 10 10 10 9 9 9 9 9
19 14 17 23 19 10 13 8 10 9 9 6 6 6 9 15 15 7 7 9 7 10 10 4 0 4 9 12 7 7 7
13 14 10 10 6 6 8 7 10 14 12 12 9 9 6 10 13 16 21 21 11 11 6 6 8 16 17 18 13 11 15
7 7 7 7 11 12 10 12 10 19 11 10 19 7 7 12 19 22 24 21 14 14 19 18 13 10 6 6 6 6 6
16 12 12 19 25 27 12 10 11 10 7 6 6 6 8 9 11 21 20 29 20 20 18 18 18 18 15 16 13 9 6
6 6 6 7 6 6 8 6 8 11 13 17 15 15 20 21 26 32 29 14 10 11 11 11 9 10 10 16 16 16 18
17 19 20 15 12 12 12 14 14 17 22 18 19 14 14 14 20 16 13 13 11 10 10 7 6 6 6 9 9 12 12
16 16 19 8 8 11 11 17 15 13 11 17 16 13 15 8 6 6 6 6 6 6 13 11 9 12 7 13 13 16 17
17 19 10 9 14 15 15 8 8 8 15 10 8 7 9 8 8 6 6 9 9 12 21 14 13 11 8 8 11 11 6
6 9 6 7 7 9 19 10 10 8 8 8 7 7 13 7 8 9 10 7 7 9 9 8 8 12 16 10 10 9 7
6 6 9 9 7 7 9 9 10 10 6 6 11 7 7 6 6 8 6 8 12 9 6 6 10 6 6 9 10 6 9
8 6 6 6 8 6 6 6 6 6 9 10 9 9 7 7 7 8 9 7 7 7 7 6 6 10 6 6 6 6 6
6 6 10 8 8 8 8 6 6 8 6 6 6 6 6 6 6 8 6 7 10 7 7 9 7 7 7 7 7 8 7
7 7 7 7 7 9 7 7 7 7 7 7 9 7 7 9 8 6 6 7 10 7 7 6 6 6 6 6 6 6 6
6 6 9 8 9 9 8 8 13 13 13 8 9 9 6 7 6 7 7 7 8 15 8 8 

Sequence : gnlti136477498


  [Part of this file has been deleted for brevity]

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

BaseQuality : gnlti136479884
22 29 17 17 17 29 17 11 10 6 6 8 15 19 28 16 17 15 28 28 33 32 34 25 15 23 27 33 33 33 39
40 46 46 40 40 34 34 34 29 35 35 40 40 45 45 40 40 40 51 45 45 45 45 45 45 45 51 56 56 56 40
37 35 34 34 34 35 35 35 40 40 40 40 40 40 45 45 51 34 33 33 33 33 31 35 35 34 34 34 35 35 35
40 40 40 40 39 39 40 40 37 37 40 45 45 51 51 56 56 51 51 51 51 51 51 51 56 56 51 51 51 51 51
51 51 45 45 45 45 40 40 40 40 40 39 51 51 46 46 46 56 48 48 48 48 36 36 33 27 23 15 15 19 23
27 40 40 44 46 46 48 40 40 40 40 40 40 42 42 42 46 56 42 42 42 46 46 51 51 51 51 51 51 51 51
51 45 40 40 40 37 37 38 35 33 33 34 34 34 35 40 40 37 40 37 34 34 32 32 32 37 56 56 45 45 40
40 56 46 46 42 40 35 39 39 37 37 37 45 45 45 45 45 40 40 40 40 40 40 40 45 40 37 37 37 35 35
35 35 35 40 45 43 56 56 51 51 51 51 51 51 51 51 51 40 40 37 39 35 35 44 50 50 42 35 25 25 28
28 28 35 46 46 45 45 45 45 45 51 56 56 56 56 56 56 51 51 51 51 51 51 56 56 56 56 51 40 40 40
40 40 40 51 45 45 45 45 45 40 40 40 40 40 45 51 51 51 56 56 56 56 51 51 51 45 45 45 45 45 45
40 37 37 45 40 40 40 45 42 40 40 46 46 30 29 28 45 45 40 40 40 45 45 40 40 40 37 37 40 42 42
46 56 56 56 45 40 37 37 37 39 40 40 40 39 39 40 40 40 40 51 56 56 56 56 56 48 46 18 18 20 29
37 40 40 40 46 40 39 36 33 32 32 32 32 32 32 33 36 39 39 39 39 32 34 34 46 40 40 40 40 39 36
40 40 34 34 22 48 31 40 40 44 44 46 46 46 46 46 46 46 40 40 40 40 39 39 22 21 21 33 33 42 46
35 35 35 32 32 29 34 34 29 29 39 39 40 40 40 40 51 46 37 25 25 25 29 29 37 40 40 40 40 40 37
37 35 34 34 34 32 32 32 33 29 32 25 29 37 31 31 18 18 18 48 48 48 56 56 56 46 46 46 46 40 28
28 24 30 30 31 31 29 32 32 29 35 35 45 35 21 26 11 11 11 27 27 45 45 40 40 46 35 29 29 29 29
26 32 29 28 28 32 27 25 20 18 18 10 10 6 6 9 13 10 10 12 14 12 12 15 21 28 19 15 6 6 9
13 22 21 11 9 6 7 13 16 14 11 11 11 16 18 26 24 29 25 24 16 16 11 8 10 17 20 25 26 29 29
34 29 26 26 29 29 26 26 20 25 25 29 33 33 33 40 34 29 27 16 15 6 6 8 16 19 17 13 8 13 9
9 9 8 8 16 25 25 19 14 8 8 8 14 13 11 10 14 14 23 23 27 20 15 15 20 23 25 20 19 17 10
8 12 12 15 21 23 29 27 27 23 23 19 14 7 7 6 9 17 16 18 15 9 6 8 8 23 31 24 13 11 9
7 7 15 19 10 10 7 6 9 9 18 17 10 9 11 8 8 11 16 15 19 15 14 19 9 9 8 8 13 18 27
31 32 24 17 14 14 14 11 15 15 10 11 15 21 21 21 21 17 12 6 7 8 6 6 15 13 13 11 8 8 8
13 10 9 9 9 15 15 24 17 14 7 6 11 8 8 8 8 8 8 10 11 10 10 12 10 10 8 8 9 14 15
6 6 6 6 9 11 9 9 9 10 9 9 9 13 16 16 13 6 6 9 9 8 12 6 6 8 8 9 9 9 9
9 13 10 6 6 8 8 10 13 7 6 10 9 9 10 12 15 6 6 8 6 6 8 13 9 11 8 8 9 9 10
6 8 6 6 10 9 9 9 11 9 7 7 8 8 6 7 11 8 10 8 8 6 6 8 6 6 6 6 8 6 6
10 8 9 9 7 8 17 18 19 15 13 13 10 6 6 9 9 11 9 10 10 12 10 10 9 9 8 8 10 12 8
8 8 8 10 10 10 12 10 9 9 9 9 10 9 8 8 6 6 8 8 6 6 8 8 10 10 14 11 11 9 9
10 8 8 13 11 10 10 8 6 6 8 8 8 8 10 10 6 6 9 6 8 10 9 9 9 9 9 9 9 16 9
9 9 10 13 13 12 8 

Sequence : gnlti136479884
Is_read
Padded
Insert_size 500 5000
SCF_File "gnlti136479884.scf"
Clipping QUAL 31 434
Align_to_SCF 1 999 1 999

File: step1_res_cafstrainnames.txt

step1_snpsinSTRAIN_default.caf	default
step1_nosnps_remain.caf	remain

File: step2_reads.caf


DNA : default_c1
TTTMGCGTGGYCGCCCGGSCAGGTACACAAACTCAATGCTTTTTCCTGCAGACAAAGAGT
TGATCCATGACGGGAAGAAGTATAAGTTACCGGACTTGGTGAGGCCCCACAGAGGACCAT
RCAGGTTTGAKATGTAAAGCTTCAAGTTCTTCAAGTTCTTGGAGGACTTGTTGGTAATTG
TTGTCGAGTATCTRTAGTAAGTTTTTCCGTTGAGCACCCATGAACTKGTCACCCTYTGAG
TAACAGCAATTGGGCTGGTAGATGAAGCTGGAAWGCGTTTAGCCACTGGCTTAGCAGCTG
GTCTTGGATTAGTAGYGATTGGTTTAAGAGCAGGTAGCTGCACTGGTAGRAGCTGATTGT
AGCCGCTGTGACCAGAATGAAGCCTTGCTAATATACCAATAAGCGGAGYATTGTTATAAG
TGGCAGGCTCAGTTTGCTCGTAATTATCTCTTTGATCAGCGAAATTGTCATAAGCATCGG
GTCCACCAACGAYCKCRSCMGYRASCAGATTTGGRTCATTGCCCTTTCGGGTATACCAAG
TGGCATATCCGCCTCGGCAGGTCACGAACGACCTGTCAACCTTGTACCTGCCCGGGCGGC
CGCTCGAAA

BaseQuality : default_c1
32 37 43 35 43 20 48 18 49 44 39 44 44 39 39 48 55 55 50 49 48 48 50 49 49 56 55 49 55 55 55
56 56 55 55 55 55 55 55 61 55 55 55 60 60 48 43 44 44 44 48 55 55 55 55 55 61 60 61 61 61 61
61 61 61 61 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 49 49 49 49 49 49 60
60 49 46 46 47 46 46 50 49 49 49 49 49 55 61 61 55 55 55 60 55 55 60 60 60 60 61 55 61 56 61
61 55 49 54 54 60 45 49 49 50 65 68 68 60 60 64 58 67 70 58 58 60 58 58 78 81 87 69 57 57 63
74 74 73 72 70 62 59 59 57 56 65 58 56 54 59 54 54 56 48 68 79 70 57 57 59 59 59 76 82 73 79
85 82 82 84 90 90 90 73 86 86 76 76 74 68 68 71 80 85 79 75 76 80 83 86 81 88 88 88 84 82 80
75 75 82 86 76 74 73 78 82 63 89 79 79 83 83 76 76 79 59 74 74 86 81 83 88 82 90 90 90 90 90
90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 69 89 90 81 81 75
72 72 80 90 90 87 87 80 73 73 86 81 87 88 90 90 88 90 90 86 76 76 77 70 38 54 65 70 86 87 90
90 90 90 90 90 70 90 90 88 81 81 76 81 75 81 90 89 90 90 90 90 90 84 85 86 90 90 90 90 90 90
90 90 90 90 90 74 81 81 63 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 87 86 87 90
90 88 90 90 90 90 90 90 90 90 90 89 78 82 82 85 85 90 90 90 90 90 90 90 90 65 90 90 90 90 88
89 89 90 90 90 66 90 90 90 90 90 90 90 90 90 84 90 90 90 79 90 87 87 90 88 90 90 90 90 90 90
90 90 81 90 90 90 90 90 90 90 90 88 88 90 86 90 90 90 90 90 90 90 90 90 90 90 90 90 90 82 75
75 87 76 84 89 90 89 90 90 90 90 90 90 90 85 85 88 83 82 83 83 79 83 89 90 66 90 64 90 63 90
65 73 84 57 90 62 62 90 62 90 90 80 40 60 33 33 75 81 44 90 90 90 88 88 88 80 78 81 78 78 83
83 79 79 85 84 68 67 54 50 48 55 62 64 89 90 90 87 83 82 76 75 58 66 62 67 67 65 78 78 69 69
70 75 80 79 79 79 79 79 79 81 69 61 54 30 50 60 71 80 39 35 39 44 44 50 60 49 50 44 44 49 56
64 55 40 38 40 34 34 51 51 40 34 34 34 34 34 35 51 51 40 40 

Sequence : default_c1
Is_read
Padded
Insert_size 500 5000
SCF_File "default_c1.scf"
Clipping QUAL 1 609
Align_to_SCF 1 20 1 20
Align_to_SCF 21 507 22 508
Align_to_SCF 508 609 510 611



DNA : default_c2
TTAGCGTGGTCGCGGCCGAGGTCGCGAAACAGCTGAAGAAAGGAAAGCTCAGTCCCAACT


  [Part of this file has been deleted for brevity]

51 51 51 56 56 56 56 56 56 56 45 45 45 45 45 45 45 43 43 45 45 45 45 51 51 51 45 40 43 40 40
43 40 40 40 43 40 35 43 43 35 35 35 40 40 45 46 42 42 42 56 56 56 56 56 56 56 56 50 44 44 56
42 43 51 51 51 51 56 46 46 56 56 37 40 40 40 40 45 56 56 51 51 40 40 40 40 45 45 45 45 51 51
56 51 51 40 40 40 45 56 56 47 47 47 42 44 37 45 45 45 45 45 45 45 45 45 39 35 40 40 40 40 40
46 46 56 51 51 51 51 51 51 51 51 51 45 39 39 39 35 35 35 35 35 35 40 40 40 45 45 45 40 40 40
45 45 45 45 26 25 15 15 15 25 46 46 40 40 40 34 34 34 44 40 48 40 25 25 26 26 27 27 33 36 29
30 36 36 36 36 46 46 36 41 41 30 30 30 

Sequence : remain_s1044
Is_read
Padded
Insert_size 500 5000
SCF_File "remain_s1044.scf"
Clipping QUAL 1 323
Align_to_SCF 1 323 1 323



DNA : remain_s1045
TTTCGAGCGGCCGCCCGGGCAGGTACAAGCCAATACTACACTCTAAAGTCGTGTCAGTGC
GAGGTGAGCTTCGGAATAAGCCTGTATACCTCGGAAACAGACTTCGATTATCCGTGGAAA
ATATTTGGCCTTTGCTGAACTCAGACAGTTGAGTTTAAGCTGTTATGGGTGAGGGAGACA
TGGTGTCTGAGAAGCCTGAGTTCGTGACAAATGGGAAGGTTGAGGTGGGGAAAGATGATG
GGATAGGTAAGATGACTGACATCAACGGGCGAGATAAAAGAAGGGGAGCAGTGCGATGGA
GTGAATGAAATGGAAGAGGATAACTCAGATGGTGTGGAAGTTGAGTGTCAGGATATGGAT
GTTGTCACACAA

BaseQuality : remain_s1045
29 29 29 23 19 9 9 9 21 21 46 46 22 22 22 45 30 40 40 40 40 40 45 29 19 19 17 20 17 17 14
16 16 11 11 16 23 27 31 17 17 17 30 33 35 40 35 37 42 33 33 11 10 9 9 9 9 13 13 12 10 9
9 9 19 20 39 35 35 33 29 23 26 19 19 19 29 24 28 24 22 21 23 16 15 8 8 9 17 13 16 15 16
18 16 17 21 16 20 13 13 13 17 19 29 21 19 15 11 11 11 14 12 14 9 7 7 9 10 18 18 23 29 29
28 30 25 29 28 28 28 24 24 28 28 28 27 27 22 24 15 17 9 9 9 12 13 14 11 10 10 11 20 13 22
16 24 9 10 10 25 23 19 20 22 27 27 44 35 35 32 32 32 29 35 35 35 35 29 30 23 26 26 27 29 33
29 29 32 32 32 27 27 14 14 12 24 19 19 19 14 14 22 27 27 17 16 15 25 25 27 33 24 28 28 29 32
32 34 34 29 29 25 25 29 38 38 29 25 25 17 15 9 11 9 20 20 25 23 23 28 31 32 29 16 13 6 6
8 8 9 9 10 16 21 24 27 19 9 9 9 13 19 16 10 10 9 8 8 11 17 14 20 23 23 32 29 12 11
6 6 6 13 10 10 10 19 21 28 27 28 23 24 20 20 21 29 29 29 29 29 35 35 35 39 21 12 10 10 21
24 25 22 19 19 19 19 20 26 42 26 22 13 10 9 9 11 21 27 30 28 26 26 29 25 15 15 15 18 20 17
11 11 14 14 29 29 29 24 18 18 27 30 29 34 35 35 40 36 38 34 30 30 18 9 6 5 5 5 5 11 14


Sequence : remain_s1045
Is_read
Padded
Insert_size 500 5000
SCF_File "remain_s1045.scf"
Clipping QUAL 1 372
Align_to_SCF 1 372 1 372

File: step2_straindata.txt

# Automatically generated file
# You probably don't want to edit it.

default_c1	default
default_c2	default
default_c3	default
default_c4	default
default_c5	default
default_c6	default
default_c7	default
default_c8	default
default_c9	default
default_c10	default
default_c11	default
default_c12	default
default_c13	default
default_c14	default
default_c15	default
default_c16	default
default_c17	default
default_c18	default
default_c19	default
default_c20	default
default_c21	default
default_c22	default
default_c23	default
default_c24	default
default_c25	default
default_c26	default
default_c27	default
default_c28	default
default_c29	default
default_c30	default
default_c31	default
default_c32	default
default_c33	default
default_c34	default
default_c35	default
default_c36	default
default_c37	default
default_c38	default
default_c39	default
default_c40	default
default_c41	default
default_c42	default
default_c43	default
default_c44	default
default_c45	default
default_c46	default
default_c47	default


  [Part of this file has been deleted for brevity]

remain_s995	remain
remain_s996	remain
remain_s997	remain
remain_s998	remain
remain_s999	remain
remain_s1000	remain
remain_s1001	remain
remain_s1002	remain
remain_s1003	remain
remain_s1004	remain
remain_s1005	remain
remain_s1006	remain
remain_s1007	remain
remain_s1008	remain
remain_s1009	remain
remain_s1010	remain
remain_s1011	remain
remain_s1012	remain
remain_s1013	remain
remain_s1014	remain
remain_s1015	remain
remain_s1016	remain
remain_s1017	remain
remain_s1018	remain
remain_s1019	remain
remain_s1020	remain
remain_s1021	remain
remain_s1022	remain
remain_s1023	remain
remain_s1024	remain
remain_s1025	remain
remain_s1026	remain
remain_s1027	remain
remain_s1028	remain
remain_s1029	remain
remain_s1030	remain
remain_s1031	remain
remain_s1032	remain
remain_s1033	remain
remain_s1034	remain
remain_s1035	remain
remain_s1036	remain
remain_s1037	remain
remain_s1038	remain
remain_s1039	remain
remain_s1040	remain
remain_s1041	remain
remain_s1042	remain
remain_s1043	remain
remain_s1044	remain
remain_s1045	remain

Directory: default_info

This directory contains output files.

Directory: default_log

This directory contains output files.

Directory: default_results

This directory contains output files.

Directory: remain_info

This directory contains output files.

Directory: remain_log

This directory contains output files.

Directory: remain_results

This directory contains output files.

Directory: step3_info

This directory contains output files.

Directory: step3_log

This directory contains output files.

Directory: step3_results

This directory contains output files.

Data files

**************** EDIT HERE ****************

Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

Program name	Description
emira	MIRA fragment assembly program

Author(s)

This program is an EMBOSS wrapper for a program written by Bastien Chevreux as part of the MIRA package.

History

Target users

This program is intended to be used by everyone and everything, from naive users to embedded scripts.

Comments

None