embdomain.c

Section: Operators

Functions:

embScopToPdbid	Read a scop identifier code and writes the equivalent pdb identifier code
embScopToSp	Read a scop identifier code and writes the equivalent swissprot identifier code. Relies on a list of Pdbtosp objects sorted by PDB code, which is usually obtained by a call to ajPdbtospReadAllNew.
embScopToAcc	Read a scop identifier code and writes the equivalent accession number. Relies on a list of Pdbtosp objects sorted by PDB code, which is usually obtained by a call to ajPdbtospReadAllNew.

Function embScopToPdbid

Prototype

AjPStr embScopToPdbid (
      const AjPStr scop,
      AjPStr* pdb
);

Type	Name	Read/Write	Description
const AjPStr	scop	Input	Scop identifier code
AjPStr*	pdb	Output	Pdb identifier code
AjPStr		RETURN	Pointer to pdb identifier code.

From EMBOSS 2.9.0

Function embScopToSp

Prototype

AjBool embScopToSp (
      const AjPStr scop,
      AjPStr* spr,
      const AjPList list
);

Type	Name	Read/Write	Description
const AjPStr	scop	Input	Scop domain identifier code
AjPStr*	spr	Output	Swissprot identifier code
const AjPList	list	Input	Sorted list of Pdbtosp objects
AjBool		RETURN	True if a swissprot identifier code was found for the Scop code.

From EMBOSS 2.9.0

Function embScopToAcc

Prototype

AjBool embScopToAcc (
      const AjPStr scop,
      AjPStr* acc,
      const AjPList list
);

Type	Name	Read/Write	Description
const AjPStr	scop	Input	Scop domain identifier code
AjPStr*	acc	Output	Accession number
const AjPList	list	Input	Sorted list of Pdbtosp objects
AjBool		RETURN	True if a swissprot identifier code was found for the Scop code.

From EMBOSS 2.9.0