org.emboss.jemboss.editor
Class PrintAlignmentImage

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.emboss.jemboss.gui.ScrollPanel
                      org.emboss.jemboss.editor.PrintAlignmentImage

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, javax.swing.Scrollable, java.io.Serializable

public class PrintAlignmentImage

extends ScrollPanel

Print png/jpeg image and print preview. Java 1.4 or higher is required for the imageio package which is used here to create jpeg and png images of the multiple alignment.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

private boolean	antiAlias use anti aliasing (default is false)
private java.lang.String	filePrefix prefix of file
private java.awt.print.PageFormat	format page format
private GraphicSequenceCollection	gsc alignment sequence panel
private int	nResPerLine number of residues per line
private int	pageIndex page number to print
private javax.swing.JTextField	statusField status field for print preview

Fields inherited from class javax.swing.JPanel

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Container

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PrintAlignmentImage(GraphicSequenceCollection gsc)

PrintAlignmentImage(GraphicSequenceCollection gsc, java.awt.print.PageFormat format)

Method Summary

private java.awt.image.RenderedImage	createAlignmentImage(int pageIndex) Returns a generated image
protected java.awt.print.PageFormat	getFormat() Get the page format
protected java.awt.print.PageFormat	getFormatDialog() Get a default page format
void	paintComponent(java.awt.Graphics g) Override this method to draw the sequences
void	print() Print to a jpeg or png file
void	print(int nResPerLine, java.lang.String type, java.lang.String filePrefix, boolean landscape, double leftMargin, double rightMargin, double topMargin, double btmMargin) Print to a jpeg or png file
void	print(int nResPerLine, java.lang.String type, java.lang.String filePrefix, double leftMargin, double rightMargin, double topMargin, double btmMargin) Print to one jpeg or png file
void	print(java.lang.String type, double leftMargin, double rightMargin, double topMargin, double btmMargin) Print to one jpeg or png file
protected void	printPreview() Display a print preview page
protected void	printSinglePagePreview() Display a single page print preview page
protected void	setAntiAlias(boolean antiAlias)
protected void	setFormat(java.awt.print.PageFormat format) Set the page format
void	setPageIndex(int pageIndex) Set the page number to create an image of
protected java.lang.String	showOptions(boolean showFileOptions) Provide some options for the image created
private void	writeImageToFile(java.awt.image.RenderedImage image, java.io.File file, java.lang.String type) Write out the image

Methods inherited from class org.emboss.jemboss.gui.ScrollPanel

getPreferredScrollableViewportSize, getScrollableBlockIncrement, getScrollableTracksViewportHeight, getScrollableTracksViewportWidth, getScrollableUnitIncrement

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

format

private java.awt.print.PageFormat format

page format

pageIndex

private int pageIndex

page number to print

gsc

private GraphicSequenceCollection gsc

alignment sequence panel

filePrefix

private java.lang.String filePrefix

prefix of file

statusField

private javax.swing.JTextField statusField

status field for print preview

nResPerLine

private int nResPerLine

number of residues per line

antiAlias

private boolean antiAlias

use anti aliasing (default is false)

Constructor Detail

PrintAlignmentImage

public PrintAlignmentImage(GraphicSequenceCollection gsc,
                           java.awt.print.PageFormat format)

Parameters:

gsc - sequence panel

PrintAlignmentImage

public PrintAlignmentImage(GraphicSequenceCollection gsc)

Parameters:

gsc - sequence panel

Method Detail

setFormat

protected void setFormat(java.awt.print.PageFormat format)

Set the page format

Parameters:

format - to use for the image

getFormat

protected java.awt.print.PageFormat getFormat()

Get the page format

Returns:

format to use for the image

setPageIndex

public void setPageIndex(int pageIndex)

Set the page number to create an image of

Parameters:

pageIndex - page number

paintComponent

public void paintComponent(java.awt.Graphics g)

Override this method to draw the sequences

Returns:

Graphics g

print

public void print()

Print to a jpeg or png file

print

public void print(int nResPerLine,
                  java.lang.String type,
                  java.lang.String filePrefix,
                  boolean landscape,
                  double leftMargin,
                  double rightMargin,
                  double topMargin,
                  double btmMargin)

Print to a jpeg or png file

print

public void print(java.lang.String type,
                  double leftMargin,
                  double rightMargin,
                  double topMargin,
                  double btmMargin)

Print to one jpeg or png file

print

public void print(int nResPerLine,
                  java.lang.String type,
                  java.lang.String filePrefix,
                  double leftMargin,
                  double rightMargin,
                  double topMargin,
                  double btmMargin)

Print to one jpeg or png file

showOptions

protected java.lang.String showOptions(boolean showFileOptions)

Provide some options for the image created

Parameters:

showFileOptions - display file options

getFormatDialog

protected java.awt.print.PageFormat getFormatDialog()

Get a default page format

Returns:

page format

setAntiAlias

protected void setAntiAlias(boolean antiAlias)

createAlignmentImage

private java.awt.image.RenderedImage createAlignmentImage(int pageIndex)

Returns a generated image

Parameters:

pageIndex - page number

Returns:

image

printSinglePagePreview

protected void printSinglePagePreview()

Display a single page print preview page

printPreview

protected void printPreview()

Display a print preview page

writeImageToFile

private void writeImageToFile(java.awt.image.RenderedImage image,
                              java.io.File file,
                              java.lang.String type)

Write out the image

Parameters:

image - image

file - file to write image to

type - type of image