org.emboss.jemboss.soap
Class ShowDB

java.lang.Object
  org.emboss.jemboss.soap.ShowDB

public class ShowDB

extends java.lang.Object

Run showdb and find the available scoring matrices and codon usage tables on the Jemboss server

Field Summary

private java.util.Vector	codons codon usage tables
private java.lang.String	dbText showdb output
private java.util.Vector	matrices scoring matrices
private java.lang.String	status status
private java.lang.String	statusmsg status message

Constructor Summary

ShowDB(JembossParams mysettings)

Method Summary

java.util.Vector	getCodonUsage() Get the codon usage tables
java.lang.String	getDBText() Get the output from showdb
java.util.Vector	getMatrices() Get the available matrices
java.lang.String	getStatus() Get the status of the request
java.lang.String	getStatusMsg() Get the status message

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

statusmsg

private java.lang.String statusmsg

status message

status

private java.lang.String status

status

dbText

private java.lang.String dbText

showdb output

matrices

private java.util.Vector matrices

scoring matrices

codons

private java.util.Vector codons

codon usage tables

Constructor Detail

ShowDB

public ShowDB(JembossParams mysettings)

Parameters:

mysettings - jemboss properties

Method Detail

getStatus

public java.lang.String getStatus()

Get the status of the request

Returns:

0 for success

getStatusMsg

public java.lang.String getStatusMsg()

Get the status message

Returns:

status message or contains a description of any error.

getDBText

public java.lang.String getDBText()

Get the output from showdb

Returns:

output from showdb

getMatrices

public java.util.Vector getMatrices()

Get the available matrices

Returns:

matrices names

getCodonUsage

public java.util.Vector getCodonUsage()

Get the codon usage tables

Returns:

codon usage table names