org.emboss.jemboss.soap
Class ShowDB

java.lang.Object
  extended byorg.emboss.jemboss.soap.ShowDB

public class ShowDB
extends java.lang.Object

Run showdb and find the available scoring matrices and codon usage tables on the Jemboss server


Field Summary
private  java.util.Vector codons
          codon usage tables
private  java.lang.String dbText
          showdb output
private  java.util.Vector matrices
          scoring matrices
private  java.lang.String status
          status
private  java.lang.String statusmsg
          status message
 
Constructor Summary
ShowDB(JembossParams mysettings)
           
 
Method Summary
 java.util.Vector getCodonUsage()
          Get the codon usage tables
 java.lang.String getDBText()
          Get the output from showdb
 java.util.Vector getMatrices()
          Get the available matrices
 java.lang.String getStatus()
          Get the status of the request
 java.lang.String getStatusMsg()
          Get the status message
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

statusmsg

private java.lang.String statusmsg
status message


status

private java.lang.String status
status


dbText

private java.lang.String dbText
showdb output


matrices

private java.util.Vector matrices
scoring matrices


codons

private java.util.Vector codons
codon usage tables

Constructor Detail

ShowDB

public ShowDB(JembossParams mysettings)
Parameters:
mysettings - jemboss properties
Method Detail

getStatus

public java.lang.String getStatus()
Get the status of the request

Returns:
0 for success

getStatusMsg

public java.lang.String getStatusMsg()
Get the status message

Returns:
status message or contains a description of any error.

getDBText

public java.lang.String getDBText()
Get the output from showdb

Returns:
output from showdb

getMatrices

public java.util.Vector getMatrices()
Get the available matrices

Returns:
matrices names

getCodonUsage

public java.util.Vector getCodonUsage()
Get the codon usage tables

Returns:
codon usage table names